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The map label for this gene is ydeM [H]

Identifier: 87201041

GI number: 87201041

Start: 3240527

End: 3241981

Strand: Direct

Name: ydeM [H]

Synonym: Saro_3029

Alternate gene names: 87201041

Gene position: 3240527-3241981 (Clockwise)

Preceding gene: 87201040

Following gene: 87201042

Centisome position: 90.99

GC content: 64.67

Gene sequence:

>1455_bases
GTGACCACGGTCCTCGCCCCCCGCTATCGCCTTGGCGATATCCATACTTTCGAGGCTTCCGGCCAGGGCTTCGTCTATCT
CGCATCGGCCGGCGCGATCTTCGCGCTCGACGAAGGCGCGGCAAGCGTCGTCGCCATGCTGGGCCAGCGCGAGATGGCCT
ATGGCGAGATGGTCTCCGCGCTGGTTGCCAATGGCTATTCGCGAGCCGATGCGGAAGACCTGATCCGCGAGCTGCGCAGC
GTGCGCGGCATCGTCTCGGACGAGATCCGCGAAGCGCCGCTCGCCCCCGCACCTCCGCCCGAGGACTATCCGCTCCAGGC
GCTGGTGCTCAACATCACCAACCAGTGCAACCTGGCCTGCACCTACTGCTACGAATTCGGCGCCGACAAGATCGCGACGC
CGGCGGGAAAGCCGAAGTACATGACGCTGGAAACGGCCCGTGCCTCGGTCGATTTCCTGATAGCCGGGTCGGGCCACCGC
GAAGTGCCGCACATCACCTTCTTCGGCGGTGAAACGCTGATGAACTTCAAGCTGCTGCGCGAAGTCGTGGAATACGCCAA
CGGCGCAGCGGCAGCGGCGGGCAAGCAGATCACCTACAGCCTTACCACCAATGCCACGCTACTGACCGACGAGATCATCG
CCTTCCTGTCGGACAACGCAGTCGGCGTCACCGTCTCGATGGACGGCCCGCCCGATCTCCAGGACAAGCACCGCGTCTAC
AAGACCGGCAAGGGTTCCTACGCGGTGATCGAGCCGCGCCTCAGGAAGCTGATCGCCGGCCACAGGACGCGCGCCGTCAC
CGCGCGCGTCACGCTCACCAACGGCGTGACCGACGTGGTGCGCATCTATCGCCACCTCAAGGACGATCTGGGCTTTCACG
AAGTCGGGTTCGCGCCCGTCACCAATTCGGGCGAGCGCGACTACATGATCGATGACAACGGCATGGATCACGTGATCGCG
CAGTTCCACGAACTGGCGGCAGAGTGGCTGGCCTGGGCGCTGGAGGGCCGGATGCACGGCTTCTCCAACGTCTCGGAAAC
CATCGCCGAACTCATCCAGGGCACCAATAAGTCGCATCCGTGCGGCGCCGGGCTCGGCCTGCTCGGGGTCAGTCCCTCGG
GCGACCTTTCACCCTGCCACCGCTTCACCGATTCCGATACCCATGTGCTCGGCCACATTTCGACCGGGCTCGACAAGGAC
AAGCGCAGCGACTTCCTCACGCGCGGTCATGTCGGGGCGAAGTACGAATGCGCTTCGTGCTGGGCCCGTCCGCTCTGCGC
TGGCGGCTGTCATCACGAGGCATTCGTCCGCTACGGCGATACCGGCCACGCGAACCTGCACTATTGCGACTGGATTCGCG
AGTGGACCGACGCCTGCCTGCGCATCTACGGCACGGTCGCCGCTCGCAATCCCGAATTTCTCGAACGCTTTGCGACACGA
AAGGGCCTGGCATGA

Upstream 100 bases:

>100_bases
AGACGGAAAAGGACGCCCTGGGCAAGCCGTTGACGGCAAAATCCTTCATGGTTGTCTCGGTGCCCGCCTACAAGCGCTGG
GATCAGCCGGAGGTGGCCAA

Downstream 100 bases:

>100_bases
AGCACCTTACCCCGCTCAACAGGAAAGCGCGGCGCATCGAGGAGACGATCTCCTCGACCGAGGAGGACGTCGTCGCCCTC
CAGCAGAAGCCGATGCACGT

Product: radical SAM family protein

Products: NA

Alternate protein names: AnSME homolog [H]

Number of amino acids: Translated: 484; Mature: 483

Protein sequence:

>484_residues
MTTVLAPRYRLGDIHTFEASGQGFVYLASAGAIFALDEGAASVVAMLGQREMAYGEMVSALVANGYSRADAEDLIRELRS
VRGIVSDEIREAPLAPAPPPEDYPLQALVLNITNQCNLACTYCYEFGADKIATPAGKPKYMTLETARASVDFLIAGSGHR
EVPHITFFGGETLMNFKLLREVVEYANGAAAAAGKQITYSLTTNATLLTDEIIAFLSDNAVGVTVSMDGPPDLQDKHRVY
KTGKGSYAVIEPRLRKLIAGHRTRAVTARVTLTNGVTDVVRIYRHLKDDLGFHEVGFAPVTNSGERDYMIDDNGMDHVIA
QFHELAAEWLAWALEGRMHGFSNVSETIAELIQGTNKSHPCGAGLGLLGVSPSGDLSPCHRFTDSDTHVLGHISTGLDKD
KRSDFLTRGHVGAKYECASCWARPLCAGGCHHEAFVRYGDTGHANLHYCDWIREWTDACLRIYGTVAARNPEFLERFATR
KGLA

Sequences:

>Translated_484_residues
MTTVLAPRYRLGDIHTFEASGQGFVYLASAGAIFALDEGAASVVAMLGQREMAYGEMVSALVANGYSRADAEDLIRELRS
VRGIVSDEIREAPLAPAPPPEDYPLQALVLNITNQCNLACTYCYEFGADKIATPAGKPKYMTLETARASVDFLIAGSGHR
EVPHITFFGGETLMNFKLLREVVEYANGAAAAAGKQITYSLTTNATLLTDEIIAFLSDNAVGVTVSMDGPPDLQDKHRVY
KTGKGSYAVIEPRLRKLIAGHRTRAVTARVTLTNGVTDVVRIYRHLKDDLGFHEVGFAPVTNSGERDYMIDDNGMDHVIA
QFHELAAEWLAWALEGRMHGFSNVSETIAELIQGTNKSHPCGAGLGLLGVSPSGDLSPCHRFTDSDTHVLGHISTGLDKD
KRSDFLTRGHVGAKYECASCWARPLCAGGCHHEAFVRYGDTGHANLHYCDWIREWTDACLRIYGTVAARNPEFLERFATR
KGLA
>Mature_483_residues
TTVLAPRYRLGDIHTFEASGQGFVYLASAGAIFALDEGAASVVAMLGQREMAYGEMVSALVANGYSRADAEDLIRELRSV
RGIVSDEIREAPLAPAPPPEDYPLQALVLNITNQCNLACTYCYEFGADKIATPAGKPKYMTLETARASVDFLIAGSGHRE
VPHITFFGGETLMNFKLLREVVEYANGAAAAAGKQITYSLTTNATLLTDEIIAFLSDNAVGVTVSMDGPPDLQDKHRVYK
TGKGSYAVIEPRLRKLIAGHRTRAVTARVTLTNGVTDVVRIYRHLKDDLGFHEVGFAPVTNSGERDYMIDDNGMDHVIAQ
FHELAAEWLAWALEGRMHGFSNVSETIAELIQGTNKSHPCGAGLGLLGVSPSGDLSPCHRFTDSDTHVLGHISTGLDKDK
RSDFLTRGHVGAKYECASCWARPLCAGGCHHEAFVRYGDTGHANLHYCDWIREWTDACLRIYGTVAARNPEFLERFATRK
GLA

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

Organism=Escherichia coli, GI87081923, Length=333, Percent_Identity=25.2252252252252, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI48994973, Length=188, Percent_Identity=33.5106382978723, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 52702; Mature: 52571

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTVLAPRYRLGDIHTFEASGQGFVYLASAGAIFALDEGAASVVAMLGQREMAYGEMVSA
CCCEECCCCCCCCEEEEECCCCCEEEEECCCEEEEECCCHHHHHHHHCCHHHHHHHHHHH
LVANGYSRADAEDLIRELRSVRGIVSDEIREAPLAPAPPPEDYPLQALVLNITNQCNLAC
HHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEE
TYCYEFGADKIATPAGKPKYMTLETARASVDFLIAGSGHREVPHITFFGGETLMNFKLLR
EEHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCHHHHHHHHH
EVVEYANGAAAAAGKQITYSLTTNATLLTDEIIAFLSDNAVGVTVSMDGPPDLQDKHRVY
HHHHHCCCCHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHH
KTGKGSYAVIEPRLRKLIAGHRTRAVTARVTLTNGVTDVVRIYRHLKDDLGFHEVGFAPV
CCCCCCEEEECHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCC
TNSGERDYMIDDNGMDHVIAQFHELAAEWLAWALEGRMHGFSNVSETIAELIQGTNKSHP
CCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCC
CGAGLGLLGVSPSGDLSPCHRFTDSDTHVLGHISTGLDKDKRSDFLTRGHVGAKYECASC
CCCCCEEEECCCCCCCCHHHHCCCCCCEEEEEHHCCCCCHHHHHHHHCCCCCCCCHHHHH
WARPLCAGGCHHEAFVRYGDTGHANLHYCDWIREWTDACLRIYGTVAARNPEFLERFATR
HHCHHHCCCCCCHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
KGLA
CCCC
>Mature Secondary Structure 
TTVLAPRYRLGDIHTFEASGQGFVYLASAGAIFALDEGAASVVAMLGQREMAYGEMVSA
CCEECCCCCCCCEEEEECCCCCEEEEECCCEEEEECCCHHHHHHHHCCHHHHHHHHHHH
LVANGYSRADAEDLIRELRSVRGIVSDEIREAPLAPAPPPEDYPLQALVLNITNQCNLAC
HHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEE
TYCYEFGADKIATPAGKPKYMTLETARASVDFLIAGSGHREVPHITFFGGETLMNFKLLR
EEHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCHHHHHHHHH
EVVEYANGAAAAAGKQITYSLTTNATLLTDEIIAFLSDNAVGVTVSMDGPPDLQDKHRVY
HHHHHCCCCHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHH
KTGKGSYAVIEPRLRKLIAGHRTRAVTARVTLTNGVTDVVRIYRHLKDDLGFHEVGFAPV
CCCCCCEEEECHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCC
TNSGERDYMIDDNGMDHVIAQFHELAAEWLAWALEGRMHGFSNVSETIAELIQGTNKSHP
CCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCC
CGAGLGLLGVSPSGDLSPCHRFTDSDTHVLGHISTGLDKDKRSDFLTRGHVGAKYECASC
CCCCCEEEECCCCCCCCHHHHCCCCCCEEEEEHHCCCCCHHHHHHHHCCCCCCCCHHHHH
WARPLCAGGCHHEAFVRYGDTGHANLHYCDWIREWTDACLRIYGTVAARNPEFLERFATR
HHCHHHCCCCCCHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
KGLA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]