| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87201010
Identifier: 87201010
GI number: 87201010
Start: 3215596
End: 3216036
Strand: Reverse
Name: 87201010
Synonym: Saro_2998
Alternate gene names: NA
Gene position: 3216036-3215596 (Counterclockwise)
Preceding gene: 87201011
Following gene: 87201009
Centisome position: 90.3
GC content: 63.49
Gene sequence:
>441_bases ATGACCGATATTCCGATCCCCGCAGGCCCGACCAACAAAGAGCTTGTTGACCTCGCCTATCTGGCTCTCGGCATGACCGA CACGATGTTCGGGCGCACGGAGGAGGAATACGCTTCGGGCGTCGGGCTCCTGCGCGCCATGATGGGGGAATGGCCCTTTG ACCAGTTGGGCTATGACTACACCACCCCGCGTCCTTCGGAGCGTTCCGGGATAGAGCAGAAATGGACGCAGGCCGTCAGC CTGTCGCTTGCCGAGCGCATTGCCCCGGCAGTCGGCAAGGCTCTCTCCCCGCAGTCTGCATCGGCCAAGGCTCGGTCCTA TTCAACGCTCTGCGCTGCGGTGGGCAACAAGTCCACCGTCACCTATCCGAACAACACGCCCGCTGGCGCTGGTCAGGGCC GCTCATTGGGCTTCGGCGCGTTCTTCCGGGACGGTGACTGA
Upstream 100 bases:
>100_bases GTCGCAACCAGGCGCTTTGCTGGGGGCAGGGCCTTAGCGGTGCCGAGCAACTGGCGCTCTACAACGCGCTTGCAACCTAC ATGACGGCAGTGGGGGCATA
Downstream 100 bases:
>100_bases TGCAGGTTCCCGTCCTCTCGGGGATGACCGCCCGCGAGGGTTCGTTCGCGGCATCCTTCCCGATCAACCTTGAGCCTCGC ACGTTCACAAGCGGTGTTTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 146; Mature: 145
Protein sequence:
>146_residues MTDIPIPAGPTNKELVDLAYLALGMTDTMFGRTEEEYASGVGLLRAMMGEWPFDQLGYDYTTPRPSERSGIEQKWTQAVS LSLAERIAPAVGKALSPQSASAKARSYSTLCAAVGNKSTVTYPNNTPAGAGQGRSLGFGAFFRDGD
Sequences:
>Translated_146_residues MTDIPIPAGPTNKELVDLAYLALGMTDTMFGRTEEEYASGVGLLRAMMGEWPFDQLGYDYTTPRPSERSGIEQKWTQAVS LSLAERIAPAVGKALSPQSASAKARSYSTLCAAVGNKSTVTYPNNTPAGAGQGRSLGFGAFFRDGD >Mature_145_residues TDIPIPAGPTNKELVDLAYLALGMTDTMFGRTEEEYASGVGLLRAMMGEWPFDQLGYDYTTPRPSERSGIEQKWTQAVSL SLAERIAPAVGKALSPQSASAKARSYSTLCAAVGNKSTVTYPNNTPAGAGQGRSLGFGAFFRDGD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15518; Mature: 15386
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDIPIPAGPTNKELVDLAYLALGMTDTMFGRTEEEYASGVGLLRAMMGEWPFDQLGYDY CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHCCCCC TTPRPSERSGIEQKWTQAVSLSLAERIAPAVGKALSPQSASAKARSYSTLCAAVGNKSTV CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEE TYPNNTPAGAGQGRSLGFGAFFRDGD ECCCCCCCCCCCCCCCCCCCEECCCC >Mature Secondary Structure TDIPIPAGPTNKELVDLAYLALGMTDTMFGRTEEEYASGVGLLRAMMGEWPFDQLGYDY CCCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHCCCCC TTPRPSERSGIEQKWTQAVSLSLAERIAPAVGKALSPQSASAKARSYSTLCAAVGNKSTV CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEE TYPNNTPAGAGQGRSLGFGAFFRDGD ECCCCCCCCCCCCCCCCCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA