| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87201009
Identifier: 87201009
GI number: 87201009
Start: 3214235
End: 3215596
Strand: Reverse
Name: 87201009
Synonym: Saro_2997
Alternate gene names: NA
Gene position: 3215596-3214235 (Counterclockwise)
Preceding gene: 87201010
Following gene: 87201008
Centisome position: 90.29
GC content: 61.82
Gene sequence:
>1362_bases ATGCAGGTTCCCGTCCTCTCGGGGATGACCGCCCGCGAGGGTTCGTTCGCGGCATCCTTCCCGATCAACCTTGAGCCTCG CACGTTCACAAGCGGTGTTTCGCAGGGCCAGCTTGTCACGACGCGCGGGGCATCCGTGCGGGTCACGGGCCTGCCGGGAG TGGATCGTGGCGGCACCGTGTGGAACGGGATGCACTACCGCGTGATGGGCGAATACCTCGTCCAGGTGGCTGCGGACTGG ACCGTTACGGTGATCGGCAGCGTAGGAAATGACTTCCGCGCCGTTGGCTTCGATTACGGCTTCGACCGGCTCGCCATCCG AAGCGCGGATCGGCTGTTCTACTACAATGGTGCATCCCTGACGCAGGTGACGGACCCGGACCTTGGCGCGGTCAAGGACA TGGTGTGGTCCGATGGCTACTATGTGACCACGGACGGCACCTATATCGTCGTGACCAACCTGACCGATCCGACCGCAATC GACCCGATCAAGTACGGTTCGGCGGAAGAAGACCCCGACATGATTACGGGCCTCCTGCGCTTCCGCGAGGAAATTTATGC GATCGGTCGCAACTCCATACAGGTATTCCAGAACGTCGGCGGCAGCGGCTTCCCGTTCCAGAATACGCCCGGAGCCACTA TCCCTTACGGCTGCATTTCGTCCTCGGCAAAGTGCATGGTGGGCGGGACATTCGCTTTCGTCGGCGGCGCGCGTGACGAA CCCCTGAGCGTCTATATCGAGAACGGCGGCGGGGCACTGCGCATTTCCAACCGGGAAGTTGACGACCTCCTGAATGCCGA AGCCTCTCCCGAGCTTATCGAGCTTGAGGCGCGGGTGTTTGGCGAAGAGCGCCAGTTGCTCATCCATTTGCAGGACAAGA CGCTGGGCATCGCCTTGGGAACGTCCACGGAAGGTGAGCAAGGGGCATGGTTCATCCTGCAATCAGGCAGGGGTGAGCCA TACCGCCTGCGCCATGCAGTGTGGTGCTATGGACAGCATATCGTAGGCGACACGCAGAACGCGCAGCTTGGCGTCCTGTC GTCTGATGACCGGCATTTCGGGGACCGTCCGGACTGGCAGTTCGATGCCTCGCTGCTGTTCAACGATGGTGCAGCCTTCC TCGTGAACGATGTCGAGTTGTTCGGGCAATTCCCCACCGAGGAACATGCCGTGTTCCTGTCCATGAGCCGTGATGCGACG GTCTATAGCCGTGAAGTCTCGCGGCGCATGACCGGGCGGCGTGACGAGCGGTTGCGCTGGCAGGTGGGCGTAAGGTGCCC GACGCTGGTATCCTTCCGGTTCCGTGGGCAGGGGCGCTATGCGATCAGCCGGTGTGAAATGAACGGTGAACCCCTTGGCT AG
Upstream 100 bases:
>100_bases TGGGCAACAAGTCCACCGTCACCTATCCGAACAACACGCCCGCTGGCGCTGGTCAGGGCCGCTCATTGGGCTTCGGCGCG TTCTTCCGGGACGGTGACTG
Downstream 100 bases:
>100_bases CTTCTTCATCCGCCGCGAGGTGCTGGAGCGCATCTTCGGTAAGCGCTGGGGCCTTGCCTTCGAGAACCAGCAACAGACGC TTGCCACGGTATCGGAGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 453; Mature: 453
Protein sequence:
>453_residues MQVPVLSGMTAREGSFAASFPINLEPRTFTSGVSQGQLVTTRGASVRVTGLPGVDRGGTVWNGMHYRVMGEYLVQVAADW TVTVIGSVGNDFRAVGFDYGFDRLAIRSADRLFYYNGASLTQVTDPDLGAVKDMVWSDGYYVTTDGTYIVVTNLTDPTAI DPIKYGSAEEDPDMITGLLRFREEIYAIGRNSIQVFQNVGGSGFPFQNTPGATIPYGCISSSAKCMVGGTFAFVGGARDE PLSVYIENGGGALRISNREVDDLLNAEASPELIELEARVFGEERQLLIHLQDKTLGIALGTSTEGEQGAWFILQSGRGEP YRLRHAVWCYGQHIVGDTQNAQLGVLSSDDRHFGDRPDWQFDASLLFNDGAAFLVNDVELFGQFPTEEHAVFLSMSRDAT VYSREVSRRMTGRRDERLRWQVGVRCPTLVSFRFRGQGRYAISRCEMNGEPLG
Sequences:
>Translated_453_residues MQVPVLSGMTAREGSFAASFPINLEPRTFTSGVSQGQLVTTRGASVRVTGLPGVDRGGTVWNGMHYRVMGEYLVQVAADW TVTVIGSVGNDFRAVGFDYGFDRLAIRSADRLFYYNGASLTQVTDPDLGAVKDMVWSDGYYVTTDGTYIVVTNLTDPTAI DPIKYGSAEEDPDMITGLLRFREEIYAIGRNSIQVFQNVGGSGFPFQNTPGATIPYGCISSSAKCMVGGTFAFVGGARDE PLSVYIENGGGALRISNREVDDLLNAEASPELIELEARVFGEERQLLIHLQDKTLGIALGTSTEGEQGAWFILQSGRGEP YRLRHAVWCYGQHIVGDTQNAQLGVLSSDDRHFGDRPDWQFDASLLFNDGAAFLVNDVELFGQFPTEEHAVFLSMSRDAT VYSREVSRRMTGRRDERLRWQVGVRCPTLVSFRFRGQGRYAISRCEMNGEPLG >Mature_453_residues MQVPVLSGMTAREGSFAASFPINLEPRTFTSGVSQGQLVTTRGASVRVTGLPGVDRGGTVWNGMHYRVMGEYLVQVAADW TVTVIGSVGNDFRAVGFDYGFDRLAIRSADRLFYYNGASLTQVTDPDLGAVKDMVWSDGYYVTTDGTYIVVTNLTDPTAI DPIKYGSAEEDPDMITGLLRFREEIYAIGRNSIQVFQNVGGSGFPFQNTPGATIPYGCISSSAKCMVGGTFAFVGGARDE PLSVYIENGGGALRISNREVDDLLNAEASPELIELEARVFGEERQLLIHLQDKTLGIALGTSTEGEQGAWFILQSGRGEP YRLRHAVWCYGQHIVGDTQNAQLGVLSSDDRHFGDRPDWQFDASLLFNDGAAFLVNDVELFGQFPTEEHAVFLSMSRDAT VYSREVSRRMTGRRDERLRWQVGVRCPTLVSFRFRGQGRYAISRCEMNGEPLG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49772; Mature: 49772
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQVPVLSGMTAREGSFAASFPINLEPRTFTSGVSQGQLVTTRGASVRVTGLPGVDRGGTV CCCCCCCCCCCCCCCEEEECCCCCCCCHHCCCCCCCEEEEECCCEEEEEECCCCCCCCCE WNGMHYRVMGEYLVQVAADWTVTVIGSVGNDFRAVGFDYGFDRLAIRSADRLFYYNGASL ECCEEEEHHHHHHHHHHCCEEEEEEECCCCCEEEEECCCCCCEEEEECCCEEEEECCCEE TQVTDPDLGAVKDMVWSDGYYVTTDGTYIVVTNLTDPTAIDPIKYGSAEEDPDMITGLLR EEECCCCHHHHHHHHCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH FREEIYAIGRNSIQVFQNVGGSGFPFQNTPGATIPYGCISSSAKCMVGGTFAFVGGARDE HHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEEEEEEECCCCCC PLSVYIENGGGALRISNREVDDLLNAEASPELIELEARVFGEERQLLIHLQDKTLGIALG CEEEEEECCCCEEEECCCCHHHHHCCCCCCCEEEEEEHHCCCCEEEEEEEECCEEEEEEC TSTEGEQGAWFILQSGRGEPYRLRHAVWCYGQHIVGDTQNAQLGVLSSDDRHFGDRPDWQ CCCCCCCCEEEEEECCCCCCEEEEEEEEEECCEEECCCCCCEEEEEECCCCCCCCCCCCE FDASLLFNDGAAFLVNDVELFGQFPTEEHAVFLSMSRDATVYSREVSRRMTGRRDERLRW EEEEEEEECCCEEEEEEEHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCEEE QVGVRCPTLVSFRFRGQGRYAISRCEMNGEPLG EECCCCCEEEEEEECCCCCEEEEEECCCCCCCC >Mature Secondary Structure MQVPVLSGMTAREGSFAASFPINLEPRTFTSGVSQGQLVTTRGASVRVTGLPGVDRGGTV CCCCCCCCCCCCCCCEEEECCCCCCCCHHCCCCCCCEEEEECCCEEEEEECCCCCCCCCE WNGMHYRVMGEYLVQVAADWTVTVIGSVGNDFRAVGFDYGFDRLAIRSADRLFYYNGASL ECCEEEEHHHHHHHHHHCCEEEEEEECCCCCEEEEECCCCCCEEEEECCCEEEEECCCEE TQVTDPDLGAVKDMVWSDGYYVTTDGTYIVVTNLTDPTAIDPIKYGSAEEDPDMITGLLR EEECCCCHHHHHHHHCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH FREEIYAIGRNSIQVFQNVGGSGFPFQNTPGATIPYGCISSSAKCMVGGTFAFVGGARDE HHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEEEEEEECCCCCC PLSVYIENGGGALRISNREVDDLLNAEASPELIELEARVFGEERQLLIHLQDKTLGIALG CEEEEEECCCCEEEECCCCHHHHHCCCCCCCEEEEEEHHCCCCEEEEEEEECCEEEEEEC TSTEGEQGAWFILQSGRGEPYRLRHAVWCYGQHIVGDTQNAQLGVLSSDDRHFGDRPDWQ CCCCCCCCEEEEEECCCCCCEEEEEEEEEECCEEECCCCCCEEEEEECCCCCCCCCCCCE FDASLLFNDGAAFLVNDVELFGQFPTEEHAVFLSMSRDATVYSREVSRRMTGRRDERLRW EEEEEEEECCCEEEEEEEHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCEEE QVGVRCPTLVSFRFRGQGRYAISRCEMNGEPLG EECCCCCEEEEEEECCCCCEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA