| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is fhuA [H]
Identifier: 87200962
GI number: 87200962
Start: 3167995
End: 3170157
Strand: Reverse
Name: fhuA [H]
Synonym: Saro_2950
Alternate gene names: 87200962
Gene position: 3170157-3167995 (Counterclockwise)
Preceding gene: 87200963
Following gene: 87200961
Centisome position: 89.01
GC content: 63.43
Gene sequence:
>2163_bases ATGATGAAAATGTCCGTATTGAAGGCCGCGCTTGCGGCTGGTGTCGCGATGGGAGTGATGCCGACGATGGCCTGGGCGCA GTCCGCCCCGGCAGAGGAACAGGCCACGCCCGCGACCGATGGACTGGTCGTGATCGGCCAGCGCCAGCAGTATCGTGGCG ACGTGCCGCTTTCGGCCCTGCCGCAGAGCGTGCAGGTGCTCGATTCCAAGACTCTGCAGGATCTCAACATTACCCGCTTC GATGCGGCGCTGGAACTGACCAGCGGCATCGCGAAGCAGAACAACTTCGGCGGTCTGTGGGATGCGTTCGCGGTCCGCGG CTTTGCCGGCGACGAGAACTTCCCGTCGGGCTTTCTGGTCAACGGCTTCAACGGCGGTCGCGGCTACGGCGGCCCGCGCG ATGCCTCGAACATCGAGAAGATCGAAGTCCTGAAGGGTCCCAACGGCGCCGTGTTCGGTCGTGGCGAGCCGGGCGGTACG ATCAACATCATCACCAAGAAGGCGCGCACCGACGAGACCTTCGGGTCGTTTTCGCTCCTCGGCGGTAGCTGGAACAACTT CCGCGTCGAAGCCGACTACAACCTTGCCATCACCGACACGCTCGCGGTCCGTCTCAACGGTGCGGTGCAGGACGGCGACA GCTTCCGCGACACCGTTCACCAGACCAAGTACGTCGCCTCGCCCTCGATCCTGTTCAAGCCCTCCAGCGACACCAGCCTG TCGTACGAGATGGAATTCGTCGACAACAAGGTGCCGTTCGACCGCGGCGTTCTGGCGATCGGTGGCAAGCTTGGCGTCAT CCCCAACTCGCGCTTCCTTGGCGAGCCGGGCGACGGTCCGATCCGCGTGAAGGTGCTGGGCCACCAGCTCCAGCTCCAGC AGAAGATCGGCGGCGACTGGTACTTCCTCGCCGGTGTCGGTTACCGCGATACCAGCTTCAACGGCTATGGCACGCAGGCA GAACTCGCCCTTGGCCGCCAGTCGCTCGACAACGACGGCACCAACCTGACTCGCCAGCGCATCCTGCGCGACTACAACAC CACCAACACCTCGGTGCGCGGCGAAATCTCTGGCAAGCTGTACACCGGCCCGTTCACGCACCACGTGCTGGTCGGGGCCG ACTGGGATCGCTTCCACATCGACGTGCTGCAGAAGCGCTACCGTCCGCCGAGCTATACGCCGGGCAGCGCGTTCACCGCC GCGAACAATGCCATCAACGTGTTCGATCCGGTCTACGGGCAGCTCCCGACGGTGACCGCCGTGCAGCAGAACACCGACGA AGTCCAAAAGGCCTACGGCATCTACTTCCAGGACCAGATCGACATCACCGATCGCCTGAAGGTGCGCGTGGGTGGTCGAT TCGACCACTTCGACCAGACCATCCTGAACCGCACGACCAGCAAGCTGTCCAAGGTCACGTTCAAGCAGTTCAGCCCAACG GCCGGCGCGCTGTTCAAGATTACCGAGGATCTTTCGATCTACGGCGGTTACGGCGAGGGCTTCCGTCCGAACAGCGGCGT GGACTTCTTCGGCAACTCCTTCGCGCCGGAACTCAGCAAGTCCTACGAGGTCGGCCTGCGCTTTGCCGCACCTGGTGACG CCATCACCGCGTCGGTCGCTGCCTTCACGATGAAGAAGAACAACATCCTGACCGCCGACCCGAACCCCGATCACACCGGG TCCTCGATCGCCGGTGGCGCCGCGAAGTCTCGCGGCCTGGAGTTCGACGTCACCGCGAACCTGCCGGGCGACATCTCGCT GATCGCCAGCTACGCCTATATCGATGCGTTCTGGACCACGGAATCGTCGGACAAGGACTTCGGCCTGACGATCCAGCCGG GCGACCGCCTGATCAACGTGCCCAAGCATTCGGCCAACGTCGTCCTGACCAAGGGCTTCCTCATCGGCGGACACCGCTTC AGCTTCGGCGGCGGCGTCAACTATGTTGGCAAGCGCCTGGGCGAAACGGCCACGACGTTCGAATTGCCCGGCTACGTTCT CGCCCGCCTCACCGCGAGCTACGAACCCGCCGACAACGTCAAGATCAACGCCGACGTGACCAATCTGTTCGACAAGCAGT ACTACGCCGCGTCGTATTCGAAGTTCTGGATCAATCCGGGCGCGCCGCGCGCGTTCAATGTCCGGGCGACCTTCTCGTTC TGA
Upstream 100 bases:
>100_bases ACGGCTCAAAAGTCGATTTCCCTTGCTCTCGATGATACATTATAACATCGTTGCATGGGGAATCTGTGAATGCACATCAC AGATGAGGGGTGAAGTTGCG
Downstream 100 bases:
>100_bases CTTGATACCTCATGGGGCTACCGCTCGTCGGTAGCCCCAGTTTCCTTGGGCAGGGACCATGCGCCGCAACGGTTTTCTCG CCTGGCACCGTCGTCTTGCC
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: Ferric hydroxamate receptor; Ferric hydroxamate uptake [H]
Number of amino acids: Translated: 720; Mature: 720
Protein sequence:
>720_residues MMKMSVLKAALAAGVAMGVMPTMAWAQSAPAEEQATPATDGLVVIGQRQQYRGDVPLSALPQSVQVLDSKTLQDLNITRF DAALELTSGIAKQNNFGGLWDAFAVRGFAGDENFPSGFLVNGFNGGRGYGGPRDASNIEKIEVLKGPNGAVFGRGEPGGT INIITKKARTDETFGSFSLLGGSWNNFRVEADYNLAITDTLAVRLNGAVQDGDSFRDTVHQTKYVASPSILFKPSSDTSL SYEMEFVDNKVPFDRGVLAIGGKLGVIPNSRFLGEPGDGPIRVKVLGHQLQLQQKIGGDWYFLAGVGYRDTSFNGYGTQA ELALGRQSLDNDGTNLTRQRILRDYNTTNTSVRGEISGKLYTGPFTHHVLVGADWDRFHIDVLQKRYRPPSYTPGSAFTA ANNAINVFDPVYGQLPTVTAVQQNTDEVQKAYGIYFQDQIDITDRLKVRVGGRFDHFDQTILNRTTSKLSKVTFKQFSPT AGALFKITEDLSIYGGYGEGFRPNSGVDFFGNSFAPELSKSYEVGLRFAAPGDAITASVAAFTMKKNNILTADPNPDHTG SSIAGGAAKSRGLEFDVTANLPGDISLIASYAYIDAFWTTESSDKDFGLTIQPGDRLINVPKHSANVVLTKGFLIGGHRF SFGGGVNYVGKRLGETATTFELPGYVLARLTASYEPADNVKINADVTNLFDKQYYAASYSKFWINPGAPRAFNVRATFSF
Sequences:
>Translated_720_residues MMKMSVLKAALAAGVAMGVMPTMAWAQSAPAEEQATPATDGLVVIGQRQQYRGDVPLSALPQSVQVLDSKTLQDLNITRF DAALELTSGIAKQNNFGGLWDAFAVRGFAGDENFPSGFLVNGFNGGRGYGGPRDASNIEKIEVLKGPNGAVFGRGEPGGT INIITKKARTDETFGSFSLLGGSWNNFRVEADYNLAITDTLAVRLNGAVQDGDSFRDTVHQTKYVASPSILFKPSSDTSL SYEMEFVDNKVPFDRGVLAIGGKLGVIPNSRFLGEPGDGPIRVKVLGHQLQLQQKIGGDWYFLAGVGYRDTSFNGYGTQA ELALGRQSLDNDGTNLTRQRILRDYNTTNTSVRGEISGKLYTGPFTHHVLVGADWDRFHIDVLQKRYRPPSYTPGSAFTA ANNAINVFDPVYGQLPTVTAVQQNTDEVQKAYGIYFQDQIDITDRLKVRVGGRFDHFDQTILNRTTSKLSKVTFKQFSPT AGALFKITEDLSIYGGYGEGFRPNSGVDFFGNSFAPELSKSYEVGLRFAAPGDAITASVAAFTMKKNNILTADPNPDHTG SSIAGGAAKSRGLEFDVTANLPGDISLIASYAYIDAFWTTESSDKDFGLTIQPGDRLINVPKHSANVVLTKGFLIGGHRF SFGGGVNYVGKRLGETATTFELPGYVLARLTASYEPADNVKINADVTNLFDKQYYAASYSKFWINPGAPRAFNVRATFSF >Mature_720_residues MMKMSVLKAALAAGVAMGVMPTMAWAQSAPAEEQATPATDGLVVIGQRQQYRGDVPLSALPQSVQVLDSKTLQDLNITRF DAALELTSGIAKQNNFGGLWDAFAVRGFAGDENFPSGFLVNGFNGGRGYGGPRDASNIEKIEVLKGPNGAVFGRGEPGGT INIITKKARTDETFGSFSLLGGSWNNFRVEADYNLAITDTLAVRLNGAVQDGDSFRDTVHQTKYVASPSILFKPSSDTSL SYEMEFVDNKVPFDRGVLAIGGKLGVIPNSRFLGEPGDGPIRVKVLGHQLQLQQKIGGDWYFLAGVGYRDTSFNGYGTQA ELALGRQSLDNDGTNLTRQRILRDYNTTNTSVRGEISGKLYTGPFTHHVLVGADWDRFHIDVLQKRYRPPSYTPGSAFTA ANNAINVFDPVYGQLPTVTAVQQNTDEVQKAYGIYFQDQIDITDRLKVRVGGRFDHFDQTILNRTTSKLSKVTFKQFSPT AGALFKITEDLSIYGGYGEGFRPNSGVDFFGNSFAPELSKSYEVGLRFAAPGDAITASVAAFTMKKNNILTADPNPDHTG SSIAGGAAKSRGLEFDVTANLPGDISLIASYAYIDAFWTTESSDKDFGLTIQPGDRLINVPKHSANVVLTKGFLIGGHRF SFGGGVNYVGKRLGETATTFELPGYVLARLTASYEPADNVKINADVTNLFDKQYYAASYSKFWINPGAPRAFNVRATFSF
Specific function: This receptor binds the ferrichrome-iron ligand. It interacts with the tonB protein, which is responsible for energy coupling of the ferrichrome-promoted iron transport system. Acts as a receptor for bacteriophage T5 as well as T1, phi80 and colicin M. Bi
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=769, Percent_Identity=25.8777633289987, Blast_Score=198, Evalue=8e-52, Organism=Escherichia coli, GI1787024, Length=265, Percent_Identity=30.188679245283, Blast_Score=86, Evalue=7e-18, Organism=Escherichia coli, GI1787344, Length=305, Percent_Identity=24.5901639344262, Blast_Score=83, Evalue=7e-17, Organism=Escherichia coli, GI1790743, Length=337, Percent_Identity=24.3323442136499, Blast_Score=69, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 77978; Mature: 77978
Theoretical pI: Translated: 7.05; Mature: 7.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMKMSVLKAALAAGVAMGVMPTMAWAQSAPAEEQATPATDGLVVIGQRQQYRGDVPLSAL CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCHHCCCCCCHHHC PQSVQVLDSKTLQDLNITRFDAALELTSGIAKQNNFGGLWDAFAVRGFAGDENFPSGFLV CHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCHHHHHHEECCCCCCCCCCCEEE NGFNGGRGYGGPRDASNIEKIEVLKGPNGAVFGRGEPGGTINIITKKARTDETFGSFSLL ECCCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCCEEEE GGSWNNFRVEADYNLAITDTLAVRLNGAVQDGDSFRDTVHQTKYVASPSILFKPSSDTSL CCCCCCEEEEECCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHEECCCEEEEECCCCCCE SYEMEFVDNKVPFDRGVLAIGGKLGVIPNSRFLGEPGDGPIRVKVLGHQLQLQQKIGGDW EEEEEECCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCEEEEEECCHHHHHHHCCCCE YFLAGVGYRDTSFNGYGTQAELALGRQSLDNDGTNLTRQRILRDYNTTNTSVRGEISGKL EEEEECCCCCCCCCCCCCCHHHHHCHHHCCCCCCHHHHHHHHHHCCCCCCEEEEEECCEE YTGPFTHHVLVGADWDRFHIDVLQKRYRPPSYTPGSAFTAANNAINVFDPVYGQLPTVTA EECCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEECCCCEEECCCCCCCCCCEEE VQQNTDEVQKAYGIYFQDQIDITDRLKVRVGGRFDHFDQTILNRTTSKLSKVTFKQFSPT ECCCHHHHHHHHCEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC AGALFKITEDLSIYGGYGEGFRPNSGVDFFGNSFAPELSKSYEVGLRFAAPGDAITASVA CCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCHHCCCEEEEEEEECCCCHHEEEEE AFTMKKNNILTADPNPDHTGSSIAGGAAKSRGLEFDVTANLPGDISLIASYAYIDAFWTT EEEEECCCEEECCCCCCCCCCCCCCCCHHCCCEEEEEEECCCCCHHHHHHEEEEEEEEEC ESSDKDFGLTIQPGDRLINVPKHSANVVLTKGFLIGGHRFSFGGGVNYVGKRLGETATTF CCCCCCCEEEECCCCCEEECCCCCCCEEEEEEEEEECEEEECCCCHHHHHHHHCCCCEEE ELPGYVLARLTASYEPADNVKINADVTNLFDKQYYAASYSKFWINPGAPRAFNVRATFSF ECCCCEEHHHHCCCCCCCCEEEECHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEECC >Mature Secondary Structure MMKMSVLKAALAAGVAMGVMPTMAWAQSAPAEEQATPATDGLVVIGQRQQYRGDVPLSAL CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCHHCCCCCCHHHC PQSVQVLDSKTLQDLNITRFDAALELTSGIAKQNNFGGLWDAFAVRGFAGDENFPSGFLV CHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCHHHHHHEECCCCCCCCCCCEEE NGFNGGRGYGGPRDASNIEKIEVLKGPNGAVFGRGEPGGTINIITKKARTDETFGSFSLL ECCCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCCEEEE GGSWNNFRVEADYNLAITDTLAVRLNGAVQDGDSFRDTVHQTKYVASPSILFKPSSDTSL CCCCCCEEEEECCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHEECCCEEEEECCCCCCE SYEMEFVDNKVPFDRGVLAIGGKLGVIPNSRFLGEPGDGPIRVKVLGHQLQLQQKIGGDW EEEEEECCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCEEEEEECCHHHHHHHCCCCE YFLAGVGYRDTSFNGYGTQAELALGRQSLDNDGTNLTRQRILRDYNTTNTSVRGEISGKL EEEEECCCCCCCCCCCCCCHHHHHCHHHCCCCCCHHHHHHHHHHCCCCCCEEEEEECCEE YTGPFTHHVLVGADWDRFHIDVLQKRYRPPSYTPGSAFTAANNAINVFDPVYGQLPTVTA EECCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEECCCCEEECCCCCCCCCCEEE VQQNTDEVQKAYGIYFQDQIDITDRLKVRVGGRFDHFDQTILNRTTSKLSKVTFKQFSPT ECCCHHHHHHHHCEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC AGALFKITEDLSIYGGYGEGFRPNSGVDFFGNSFAPELSKSYEVGLRFAAPGDAITASVA CCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCHHCCCEEEEEEEECCCCHHEEEEE AFTMKKNNILTADPNPDHTGSSIAGGAAKSRGLEFDVTANLPGDISLIASYAYIDAFWTT EEEEECCCEEECCCCCCCCCCCCCCCCHHCCCEEEEEEECCCCCHHHHHHEEEEEEEEEC ESSDKDFGLTIQPGDRLINVPKHSANVVLTKGFLIGGHRFSFGGGVNYVGKRLGETATTF CCCCCCCEEEECCCCCEEECCCCCCCEEEEEEEEEECEEEECCCCHHHHHHHHCCCCEEE ELPGYVLARLTASYEPADNVKINADVTNLFDKQYYAASYSKFWINPGAPRAFNVRATFSF ECCCCEEHHHHCCCCCCCCEEEECHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3079747; 8202364; 9278503; 2823072; 7515827; 8617231; 9856937; 9865695; 10850805 [H]