| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200963
Identifier: 87200963
GI number: 87200963
Start: 3170469
End: 3171677
Strand: Reverse
Name: 87200963
Synonym: Saro_2951
Alternate gene names: NA
Gene position: 3171677-3170469 (Counterclockwise)
Preceding gene: 87200964
Following gene: 87200962
Centisome position: 89.05
GC content: 63.94
Gene sequence:
>1209_bases ATGACTACGCTAGCCGCAGAGGCACCACCATTCGCGCCGGCCGCGACCCCCGCCAATCCCGCCGTTGCCAGAACCCGTCT CCTGGCGATCGACGCGCTGCGCGGCCTGGTCATGCTGTTCATGCTGGTCGATCACGTCCGCGAGACGTTCTTCCTGCACC TGCAGGTGACGGACCCGGTCGATGCCAACACGACGGACCCGGGCCTGTTCTTCACGCGCCTGCTGTCCACGTTCTGCGCG CCGACGTTCGTCGCGCTGACGGGCTTGTCGGCATGGCTTTACGGTCAGTCGCACACCAAGAAGGAAGTCAGCGAGTTCCT GTTGAAGCGGGGGCTGTTCCTGATCTTCCTTGAACTCACGGTCATCTGCCTGGCCTGGCCGACGCAGAGCTTCGAGTTTC CGCCGGAGCGCTTCTGGCTTCAGGTGATCTGGGCCATCGGCATCTCGATGGTCGCGCTTTCGGGCCTGATCTACCTGCCG CGCCCCGCACAGTTCGCTGTCGGCCTTGCGATCGTGTGCCTGCACAACCTGCTCGACGGCATCGTCCTGGCGCCCGGCGA CAGCGGCTATGCGCTGTGGGCCGTGCTGCACCAGCGCTCGGTCATCGACCTTGGCATGGGGCTTACGGCGAAGACGACTT ACCCCGTGCTGCCGTGGATCGGCGTGATCCTGCTTGGCTATGCGTGCGGACCGTGGTTCCGCAAGGGCAGCGATCCGGCG GTCCGCCTGCGGCGCCTGGTCACGCTGGGCGTGGCGATGATCGTGGGCTTCCTCGTGATCCGCTACCTCAACTTCTACGG TGACAAGCCCTGGTTCGTCGCCGAAACCCAGCTGCGCACGGTGATGAGCTTCCTTTCGCTGACCAAGTATCCGCCTTCGC TGCTGTTCCTGCTGCCGACCGTGGGCACCGGCGTGCTGCTGCTGGCACTGTTCGAGAAGTTCCAGGACAGCCCCGCGCTG CCGCACCTCGCCTACCTCGGCGGTGCACCCATGTTCTTCTACATCCTGCACCTCTACGTGCTGAAGGGCATCTATCACGT GGCCCTGGCCATGTACGGCCCGGTCAAGGGCACCGTATTCGGCGTCGACAACCTTTCGACCGTATGGATCTGGGTGTTCC TGCTGATCGTGCCGCTTTACTTGCCGACCCGCTGGTTTGCCGGTGTAAAGCAGCGTCGCAAGGACATCTGGTGGCTCAAG TACCTGTAA
Upstream 100 bases:
>100_bases CCGGTGACGGTAAAGGTCCGCACGGTCGGGTTCTACAAGGACCTGTTCCTGCCCAAGGGCGAATGACCGGGCCGCAAGAC GAGAGGGGAAGGACCAAACC
Downstream 100 bases:
>100_bases TTTAGGTCAATCGCAGCATGGCAGGGGGCCGGGAGCAATGCTTCCGGCCCTTTCTGCATGCGCAACCGCCGAAAATGCGG CGATTTGGGGACGGCACAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 402; Mature: 401
Protein sequence:
>402_residues MTTLAAEAPPFAPAATPANPAVARTRLLAIDALRGLVMLFMLVDHVRETFFLHLQVTDPVDANTTDPGLFFTRLLSTFCA PTFVALTGLSAWLYGQSHTKKEVSEFLLKRGLFLIFLELTVICLAWPTQSFEFPPERFWLQVIWAIGISMVALSGLIYLP RPAQFAVGLAIVCLHNLLDGIVLAPGDSGYALWAVLHQRSVIDLGMGLTAKTTYPVLPWIGVILLGYACGPWFRKGSDPA VRLRRLVTLGVAMIVGFLVIRYLNFYGDKPWFVAETQLRTVMSFLSLTKYPPSLLFLLPTVGTGVLLLALFEKFQDSPAL PHLAYLGGAPMFFYILHLYVLKGIYHVALAMYGPVKGTVFGVDNLSTVWIWVFLLIVPLYLPTRWFAGVKQRRKDIWWLK YL
Sequences:
>Translated_402_residues MTTLAAEAPPFAPAATPANPAVARTRLLAIDALRGLVMLFMLVDHVRETFFLHLQVTDPVDANTTDPGLFFTRLLSTFCA PTFVALTGLSAWLYGQSHTKKEVSEFLLKRGLFLIFLELTVICLAWPTQSFEFPPERFWLQVIWAIGISMVALSGLIYLP RPAQFAVGLAIVCLHNLLDGIVLAPGDSGYALWAVLHQRSVIDLGMGLTAKTTYPVLPWIGVILLGYACGPWFRKGSDPA VRLRRLVTLGVAMIVGFLVIRYLNFYGDKPWFVAETQLRTVMSFLSLTKYPPSLLFLLPTVGTGVLLLALFEKFQDSPAL PHLAYLGGAPMFFYILHLYVLKGIYHVALAMYGPVKGTVFGVDNLSTVWIWVFLLIVPLYLPTRWFAGVKQRRKDIWWLK YL >Mature_401_residues TTLAAEAPPFAPAATPANPAVARTRLLAIDALRGLVMLFMLVDHVRETFFLHLQVTDPVDANTTDPGLFFTRLLSTFCAP TFVALTGLSAWLYGQSHTKKEVSEFLLKRGLFLIFLELTVICLAWPTQSFEFPPERFWLQVIWAIGISMVALSGLIYLPR PAQFAVGLAIVCLHNLLDGIVLAPGDSGYALWAVLHQRSVIDLGMGLTAKTTYPVLPWIGVILLGYACGPWFRKGSDPAV RLRRLVTLGVAMIVGFLVIRYLNFYGDKPWFVAETQLRTVMSFLSLTKYPPSLLFLLPTVGTGVLLLALFEKFQDSPALP HLAYLGGAPMFFYILHLYVLKGIYHVALAMYGPVKGTVFGVDNLSTVWIWVFLLIVPLYLPTRWFAGVKQRRKDIWWLKY L
Specific function: Unknown
COG id: COG3503
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44940; Mature: 44809
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTLAAEAPPFAPAATPANPAVARTRLLAIDALRGLVMLFMLVDHVRETFFLHLQVTDPV CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCC DANTTDPGLFFTRLLSTFCAPTFVALTGLSAWLYGQSHTKKEVSEFLLKRGLFLIFLELT CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH VICLAWPTQSFEFPPERFWLQVIWAIGISMVALSGLIYLPRPAQFAVGLAIVCLHNLLDG HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHCC IVLAPGDSGYALWAVLHQRSVIDLGMGLTAKTTYPVLPWIGVILLGYACGPWFRKGSDPA EEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCHH VRLRRLVTLGVAMIVGFLVIRYLNFYGDKPWFVAETQLRTVMSFLSLTKYPPSLLFLLPT HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHHH VGTGVLLLALFEKFQDSPALPHLAYLGGAPMFFYILHLYVLKGIYHVALAMYGPVKGTVF HHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE GVDNLSTVWIWVFLLIVPLYLPTRWFAGVKQRRKDIWWLKYL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECC >Mature Secondary Structure TTLAAEAPPFAPAATPANPAVARTRLLAIDALRGLVMLFMLVDHVRETFFLHLQVTDPV CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCC DANTTDPGLFFTRLLSTFCAPTFVALTGLSAWLYGQSHTKKEVSEFLLKRGLFLIFLELT CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH VICLAWPTQSFEFPPERFWLQVIWAIGISMVALSGLIYLPRPAQFAVGLAIVCLHNLLDG HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHCC IVLAPGDSGYALWAVLHQRSVIDLGMGLTAKTTYPVLPWIGVILLGYACGPWFRKGSDPA EEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCHH VRLRRLVTLGVAMIVGFLVIRYLNFYGDKPWFVAETQLRTVMSFLSLTKYPPSLLFLLPT HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHHH VGTGVLLLALFEKFQDSPALPHLAYLGGAPMFFYILHLYVLKGIYHVALAMYGPVKGTVF HHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE GVDNLSTVWIWVFLLIVPLYLPTRWFAGVKQRRKDIWWLKYL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA