| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200930
Identifier: 87200930
GI number: 87200930
Start: 3136178
End: 3137239
Strand: Reverse
Name: 87200930
Synonym: Saro_2918
Alternate gene names: NA
Gene position: 3137239-3136178 (Counterclockwise)
Preceding gene: 87200934
Following gene: 87200927
Centisome position: 88.09
GC content: 70.24
Gene sequence:
>1062_bases ATGAACCCGATCATGGAGATCGAAGAGGTCGCAAAGGCGATCGAATGGCAGGCGGACCATGCCGCGAACAATGGCGCGCC CTGCACCGGGCGGGTCGTGCGGGCCCAGTTGCGGCTGCTGGACGGGGCGACCGAGGTGGGGCGGCGAATCGCTTCGTGGC CGGGCAAGCCGCTGGAGGACGCCCTGCCGCTGCGGCTGGCGGGCGGGCACCACAATCTCGTGCTTACCGGCAAGGACGCG CGTCTGGCGCCGGTCTATCGCGGCGAAGTGACCGACCAGGAGGAGGTCGACGCGCTGGTCGTGGCGGTGACGCGCGCCCA TGACGCGGACCTGCTGCCGTGGCTCGACGGGCCGCCGCAGACCAACGAGGCAGGGCGTTCGGCCTCGATCATGGCGGCGC TGCTGTGGCTGTCGGGCAAGGTGGGGTCGCGCTTCGAACTGAACGAGCTGGGCGCGAGCGCGGGCGTGAATACCATGATG GAGCGGTTCTTCTTCGACCTTGGCGGGACCGTTGCGGGGCCGGAGGATTCGCCGATGCGGATCGTGCCCGAGTGGCGCGG GCCCCCGCCTCCCCAGGCGCCGGTCGAGATAACCGGCATCTGTGGATGCGATCGTGCGCCAGTGGACCTTGCCGATCCGG AGCAGGCCTTGCGCCTCAAGTCCTATGTCTGGGCCGAGGTAAGCGAGCGGATCGCGCGGATCGATGCGGCGATCGCGCTC GCGGCGCAGCGCGCGCCCGACGTGGTGCAAATGGACGCGGGGGATTTCGTGGCGCAGCGGCTGGCCGCGCCGCAGGAAGA CGACACGACCCGCGTATTCTTCCACTCGATCGTCTGGCAGTACCTTCCCGGCGAAACCCGCGCGCGGATCGAGGCGACGA TGGCCGAGGCGGGGGCAAGGGCCGATGCGCGGCGGCGGCTTGCGTGGGTCATGCTCGAGACCAACCGCCAGACCTTCCGC CACGAACTGACCGTGCGGCATTGGCCGGGCGGCGGGGAGCCTGCGGTCCTCGGCACGGCCCACGCACATGGGGCGTGGGT GGAGTGGTTCGGGAAGGACTAG
Upstream 100 bases:
>100_bases CCTCGTCGAGGATGCGGCCCTTCGGCAGGGCGAAAACGAGCGGTGCGGCGGTGGACATAACCCGCCGCCCTTATGGCAGC GACGCGCAAAGGGCAACCGA
Downstream 100 bases:
>100_bases CCGAGGAACCGGTCAAGCGCGGCGTTGACGACGTCTGGCGCTTCCCAAGGCACGAAATGCCCGCAATCGTGCACAGGTTC CACCGTGAGGTTGGTGACCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 353; Mature: 353
Protein sequence:
>353_residues MNPIMEIEEVAKAIEWQADHAANNGAPCTGRVVRAQLRLLDGATEVGRRIASWPGKPLEDALPLRLAGGHHNLVLTGKDA RLAPVYRGEVTDQEEVDALVVAVTRAHDADLLPWLDGPPQTNEAGRSASIMAALLWLSGKVGSRFELNELGASAGVNTMM ERFFFDLGGTVAGPEDSPMRIVPEWRGPPPPQAPVEITGICGCDRAPVDLADPEQALRLKSYVWAEVSERIARIDAAIAL AAQRAPDVVQMDAGDFVAQRLAAPQEDDTTRVFFHSIVWQYLPGETRARIEATMAEAGARADARRRLAWVMLETNRQTFR HELTVRHWPGGGEPAVLGTAHAHGAWVEWFGKD
Sequences:
>Translated_353_residues MNPIMEIEEVAKAIEWQADHAANNGAPCTGRVVRAQLRLLDGATEVGRRIASWPGKPLEDALPLRLAGGHHNLVLTGKDA RLAPVYRGEVTDQEEVDALVVAVTRAHDADLLPWLDGPPQTNEAGRSASIMAALLWLSGKVGSRFELNELGASAGVNTMM ERFFFDLGGTVAGPEDSPMRIVPEWRGPPPPQAPVEITGICGCDRAPVDLADPEQALRLKSYVWAEVSERIARIDAAIAL AAQRAPDVVQMDAGDFVAQRLAAPQEDDTTRVFFHSIVWQYLPGETRARIEATMAEAGARADARRRLAWVMLETNRQTFR HELTVRHWPGGGEPAVLGTAHAHGAWVEWFGKD >Mature_353_residues MNPIMEIEEVAKAIEWQADHAANNGAPCTGRVVRAQLRLLDGATEVGRRIASWPGKPLEDALPLRLAGGHHNLVLTGKDA RLAPVYRGEVTDQEEVDALVVAVTRAHDADLLPWLDGPPQTNEAGRSASIMAALLWLSGKVGSRFELNELGASAGVNTMM ERFFFDLGGTVAGPEDSPMRIVPEWRGPPPPQAPVEITGICGCDRAPVDLADPEQALRLKSYVWAEVSERIARIDAAIAL AAQRAPDVVQMDAGDFVAQRLAAPQEDDTTRVFFHSIVWQYLPGETRARIEATMAEAGARADARRRLAWVMLETNRQTFR HELTVRHWPGGGEPAVLGTAHAHGAWVEWFGKD
Specific function: Unknown
COG id: COG4427
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38498; Mature: 38498
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPIMEIEEVAKAIEWQADHAANNGAPCTGRVVRAQLRLLDGATEVGRRIASWPGKPLED CCCHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCC ALPLRLAGGHHNLVLTGKDARLAPVYRGEVTDQEEVDALVVAVTRAHDADLLPWLDGPPQ CCCEEEECCCCEEEEECCCCEECCEECCCCCCHHHHCEEEEEEECCCCCCCCCCCCCCCC TNEAGRSASIMAALLWLSGKVGSRFELNELGASAGVNTMMERFFFDLGGTVAGPEDSPMR CCCCCCHHHHHHHHHHHCCCCCCEEEHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCE IVPEWRGPPPPQAPVEITGICGCDRAPVDLADPEQALRLKSYVWAEVSERIARIDAAIAL EECCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAQRAPDVVQMDAGDFVAQRLAAPQEDDTTRVFFHSIVWQYLPGETRARIEATMAEAGAR HHHCCCCEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC ADARRRLAWVMLETNRQTFRHELTVRHWPGGGEPAVLGTAHAHGAWVEWFGKD HHHHHCEEEEEEECCCHHHHHEEEEEECCCCCCCCEEECCCCCCCEEEECCCC >Mature Secondary Structure MNPIMEIEEVAKAIEWQADHAANNGAPCTGRVVRAQLRLLDGATEVGRRIASWPGKPLED CCCHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCC ALPLRLAGGHHNLVLTGKDARLAPVYRGEVTDQEEVDALVVAVTRAHDADLLPWLDGPPQ CCCEEEECCCCEEEEECCCCEECCEECCCCCCHHHHCEEEEEEECCCCCCCCCCCCCCCC TNEAGRSASIMAALLWLSGKVGSRFELNELGASAGVNTMMERFFFDLGGTVAGPEDSPMR CCCCCCHHHHHHHHHHHCCCCCCEEEHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCE IVPEWRGPPPPQAPVEITGICGCDRAPVDLADPEQALRLKSYVWAEVSERIARIDAAIAL EECCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAQRAPDVVQMDAGDFVAQRLAAPQEDDTTRVFFHSIVWQYLPGETRARIEATMAEAGAR HHHCCCCEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC ADARRRLAWVMLETNRQTFRHELTVRHWPGGGEPAVLGTAHAHGAWVEWFGKD HHHHHCEEEEEEECCCHHHHHEEEEEECCCCCCCCEEECCCCCCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA