| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87200892
Identifier: 87200892
GI number: 87200892
Start: 3103078
End: 3103935
Strand: Reverse
Name: 87200892
Synonym: Saro_2879
Alternate gene names: NA
Gene position: 3103935-3103078 (Counterclockwise)
Preceding gene: 87200896
Following gene: 87200891
Centisome position: 87.15
GC content: 63.29
Gene sequence:
>858_bases ATGACCCGCGCCGAGCTCTATGCCGTCCTGGACCGCTTTCTGGCCGCGCTCGACGCCCGCGATCCGACGGCGCTCGATTG GGCGCCGGGTGCGCACCACAGCGAGAACAACGTCATGCTGGAAATCGGCGATGGCGTATGGGGCACGATCGACCGGCTCG GCGACTACCGGCTCCGCTTTGCCGACACGCGCACCCGCCAGGTCGGCTATTTCGGCACCGTGATCGAGCCGATCGAGGAA TCTGCCTTCACCCTGCGTCTCGCCCTCGACGAAGCGGGCCGGATCGCCGAGTGCGAGATGCTGATCGTCCGGCAATCCGA CAGCGGCATCAAGTTCGAGAACTGCCGCTACTGGGACAAGCCGATCCTTCACCGCGAACCCGAAGCCCCGGTCTCGCGCC AGGAGATGGTGCGTCTTTCGAACGGCTACTTCGACACGCTACAGCGCAATGACGGAACTATCCACACCAGGTTCCACCCC GATTGCAACCGCGTGGAAAACGGCGTCCAGACCACGCGCAATCCCGATTTCGCCAAGATCGTTCCGGTCTCCGCCCTGGG CTGCGAAGAGCAGTTCCGCATGGGCAACTACCGTTATGACGACGACCTGCGCGCGCGCCGCTTCCCGCTGGTCGACGAAG AGCGTGGCCTTGTCCTCGCGTTCGGCTTCATCGACCATTCGGGCCGTCTGCGCGAATTCCAGCTTACGGATGGGCGCACG GTGAAGAGCCCGGTCCTGCGGCCGCACAGCTTCTACATCTCCGAACTGTTCAAGATCGACCACGGCATGATCGAACAGAT CGAGGCGAACTTCATAACCGTGCCCTATCGCATGCCGAGCCCCTGGGATTTGCTATGA
Upstream 100 bases:
>100_bases TGCGGGCCACGTTCGCTCTCCCCTTTATTTATAACAATTGGTAGAGTATGCCCTTGCACGAGAAGGCCGTCAAAGCCTCA TTGATGAATTGGGAGAAGTG
Downstream 100 bases:
>100_bases TGCGCCAGCTTCTCGCCACCCTGTTCCTTGGCCTCGCCGCCTGCTCCCTCGGCGGCGCGACTGTCCTGACCGAGGGCGCC GGACGCGAGTGGCCCGGCCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MTRAELYAVLDRFLAALDARDPTALDWAPGAHHSENNVMLEIGDGVWGTIDRLGDYRLRFADTRTRQVGYFGTVIEPIEE SAFTLRLALDEAGRIAECEMLIVRQSDSGIKFENCRYWDKPILHREPEAPVSRQEMVRLSNGYFDTLQRNDGTIHTRFHP DCNRVENGVQTTRNPDFAKIVPVSALGCEEQFRMGNYRYDDDLRARRFPLVDEERGLVLAFGFIDHSGRLREFQLTDGRT VKSPVLRPHSFYISELFKIDHGMIEQIEANFITVPYRMPSPWDLL
Sequences:
>Translated_285_residues MTRAELYAVLDRFLAALDARDPTALDWAPGAHHSENNVMLEIGDGVWGTIDRLGDYRLRFADTRTRQVGYFGTVIEPIEE SAFTLRLALDEAGRIAECEMLIVRQSDSGIKFENCRYWDKPILHREPEAPVSRQEMVRLSNGYFDTLQRNDGTIHTRFHP DCNRVENGVQTTRNPDFAKIVPVSALGCEEQFRMGNYRYDDDLRARRFPLVDEERGLVLAFGFIDHSGRLREFQLTDGRT VKSPVLRPHSFYISELFKIDHGMIEQIEANFITVPYRMPSPWDLL >Mature_284_residues TRAELYAVLDRFLAALDARDPTALDWAPGAHHSENNVMLEIGDGVWGTIDRLGDYRLRFADTRTRQVGYFGTVIEPIEES AFTLRLALDEAGRIAECEMLIVRQSDSGIKFENCRYWDKPILHREPEAPVSRQEMVRLSNGYFDTLQRNDGTIHTRFHPD CNRVENGVQTTRNPDFAKIVPVSALGCEEQFRMGNYRYDDDLRARRFPLVDEERGLVLAFGFIDHSGRLREFQLTDGRTV KSPVLRPHSFYISELFKIDHGMIEQIEANFITVPYRMPSPWDLL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32886; Mature: 32754
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRAELYAVLDRFLAALDARDPTALDWAPGAHHSENNVMLEIGDGVWGTIDRLGDYRLRF CCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEEECCCCCCHHHHCCCEEEEE ADTRTRQVGYFGTVIEPIEESAFTLRLALDEAGRIAECEMLIVRQSDSGIKFENCRYWDK ECCCCCCCCCHHHHHHHHCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCEECCCCCCCC PILHREPEAPVSRQEMVRLSNGYFDTLQRNDGTIHTRFHPDCNRVENGVQTTRNPDFAKI CCCCCCCCCCCCHHHHHHHCCCCEEHHCCCCCEEEEEECCCHHHHHHCHHHCCCCCCEEE VPVSALGCEEQFRMGNYRYDDDLRARRFPLVDEERGLVLAFGFIDHSGRLREFQLTDGRT EEEHHCCCHHHHHCCCCCCCCCCHHHCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCC VKSPVLRPHSFYISELFKIDHGMIEQIEANFITVPYRMPSPWDLL CCCCCCCCHHHHHHHHHHHCCHHHHHHCCCEEEEEEECCCCCCCC >Mature Secondary Structure TRAELYAVLDRFLAALDARDPTALDWAPGAHHSENNVMLEIGDGVWGTIDRLGDYRLRF CHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEEECCCCCCHHHHCCCEEEEE ADTRTRQVGYFGTVIEPIEESAFTLRLALDEAGRIAECEMLIVRQSDSGIKFENCRYWDK ECCCCCCCCCHHHHHHHHCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCEECCCCCCCC PILHREPEAPVSRQEMVRLSNGYFDTLQRNDGTIHTRFHPDCNRVENGVQTTRNPDFAKI CCCCCCCCCCCCHHHHHHHCCCCEEHHCCCCCEEEEEECCCHHHHHHCHHHCCCCCCEEE VPVSALGCEEQFRMGNYRYDDDLRARRFPLVDEERGLVLAFGFIDHSGRLREFQLTDGRT EEEHHCCCHHHHHCCCCCCCCCCHHHCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCC VKSPVLRPHSFYISELFKIDHGMIEQIEANFITVPYRMPSPWDLL CCCCCCCCHHHHHHHHHHHCCHHHHHHCCCEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA