| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200792
Identifier: 87200792
GI number: 87200792
Start: 2998916
End: 2999464
Strand: Reverse
Name: 87200792
Synonym: Saro_2779
Alternate gene names: NA
Gene position: 2999464-2998916 (Counterclockwise)
Preceding gene: 87200795
Following gene: 87200791
Centisome position: 84.22
GC content: 62.84
Gene sequence:
>549_bases ATGCGCGCTGCATTCGTGCTGGTCCTGCCGCTCATGCTTGCCGCTTGCGGCGATGACGGCTCGGTCGAGAAGAAGAACGC CAGTACTGCCGAAGTCGCGAAGTCGGTCGCCGACGCGGGCATGAAGCTCAAACCGGGGCGTTGGGAGCTGACCACGAAAT TCGTCAGGTTCGACGTCGAGGGAATGCCGCCCGAAGCGAAGAAGGCCATGCAGCAGATGCTGGGCCAGGGGCACACCTTC GCCAGTTGCCTGACCAGGGAAGAGGCGGAAAAGCCGGACGGCTCGTTCTTCGGGCAGGAGAGCAACGATTGCCGTTATGA CACCTTCACCATGGGCGGCGGAAAGATCGACGCGACCATGACCTGCAAGGGCAAGGGTGCCGAGACCGGGAACAACGCCA CGATGAAGCTGGCGGGAACCTATAGCGCGGACACCTACGACATGACCATGGACATGACCGGCGCCGCTCCCAACGGCAAG TCCATGACCATGCAGATGGCGCTGGTTTCCCGGCGCGTCGGCGAATGCAAGGGCGACGAGCAGTCCTGA
Upstream 100 bases:
>100_bases TGGGGAACAAACAGCGTCCGCGCAACCGAAGTGATCCACGCCATTTGAGGTTCTGCGCCATGGTGATAGCCTCGCGGGTG GAAGAACGAGGGAGATGTTC
Downstream 100 bases:
>100_bases AGCTTTCCCGCCAAGGCCATGTTCTTGACGCGAATTTGAAACAAATGCCTTCGGACTGGCGTTCATCGACCATTAGGCCG ATGGAGCGCAGCGTATGGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 182; Mature: 182
Protein sequence:
>182_residues MRAAFVLVLPLMLAACGDDGSVEKKNASTAEVAKSVADAGMKLKPGRWELTTKFVRFDVEGMPPEAKKAMQQMLGQGHTF ASCLTREEAEKPDGSFFGQESNDCRYDTFTMGGGKIDATMTCKGKGAETGNNATMKLAGTYSADTYDMTMDMTGAAPNGK SMTMQMALVSRRVGECKGDEQS
Sequences:
>Translated_182_residues MRAAFVLVLPLMLAACGDDGSVEKKNASTAEVAKSVADAGMKLKPGRWELTTKFVRFDVEGMPPEAKKAMQQMLGQGHTF ASCLTREEAEKPDGSFFGQESNDCRYDTFTMGGGKIDATMTCKGKGAETGNNATMKLAGTYSADTYDMTMDMTGAAPNGK SMTMQMALVSRRVGECKGDEQS >Mature_182_residues MRAAFVLVLPLMLAACGDDGSVEKKNASTAEVAKSVADAGMKLKPGRWELTTKFVRFDVEGMPPEAKKAMQQMLGQGHTF ASCLTREEAEKPDGSFFGQESNDCRYDTFTMGGGKIDATMTCKGKGAETGNNATMKLAGTYSADTYDMTMDMTGAAPNGK SMTMQMALVSRRVGECKGDEQS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19472; Mature: 19472
Theoretical pI: Translated: 5.35; Mature: 5.35
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 8.2 %Met (Translated Protein) 11.0 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 8.2 %Met (Mature Protein) 11.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRAAFVLVLPLMLAACGDDGSVEKKNASTAEVAKSVADAGMKLKPGRWELTTKFVRFDVE CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCEEEEEEEEEEECC GMPPEAKKAMQQMLGQGHTFASCLTREEAEKPDGSFFGQESNDCRYDTFTMGGGKIDATM CCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEE TCKGKGAETGNNATMKLAGTYSADTYDMTMDMTGAAPNGKSMTMQMALVSRRVGECKGDE EECCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC QS CC >Mature Secondary Structure MRAAFVLVLPLMLAACGDDGSVEKKNASTAEVAKSVADAGMKLKPGRWELTTKFVRFDVE CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCEEEEEEEEEEECC GMPPEAKKAMQQMLGQGHTFASCLTREEAEKPDGSFFGQESNDCRYDTFTMGGGKIDATM CCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEE TCKGKGAETGNNATMKLAGTYSADTYDMTMDMTGAAPNGKSMTMQMALVSRRVGECKGDE EECCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC QS CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA