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The map label for this gene is rplU [H]

Identifier: 87200795

GI number: 87200795

Start: 3002334

End: 3002915

Strand: Reverse

Name: rplU [H]

Synonym: Saro_2782

Alternate gene names: 87200795

Gene position: 3002915-3002334 (Counterclockwise)

Preceding gene: 87200796

Following gene: 87200792

Centisome position: 84.31

GC content: 68.56

Gene sequence:

>582_bases
ATGGTCGTGATGCTCGAGACGAACCAGATCGTGCTGGCGGCAGTCGTCCTGATCGTGGCGTTCGTTGCGTGGTGGTTGTG
GGGCCGTTCGAAGCCGACGACGCGGAAGCGCGAATATACCGATGTCCTTTCGGAGGGCGCAGCTCCGGCGGAACGCAATA
CCGCCCTGATCGACGCGCCAAGCGCCGCCGCGCTGGTGACGCCTCCGCCGGGCGTGGGCACACTGGCGGGTGTTGGCGAA
GTCGTGGCCCATGCCGCTGCCGAGGAACTGCTCGAGGCCGCCGCGCCGCCTGCCCAGCCTACGGCCGCTTCATCCGCAGC
GCCGGCCACGGCTGCTCCCGCGAGCGGAGACGACCTTGGCCGGATCAAGGGCGTTGGGCCGAAGCTGAAGGCGCTTCTGG
CTTCGCTTGGCGTCACCAGCTTTTCCCAGATCGCCGCATGGACGGATGAGGACATCGCACGGATCGATGCGCGGCTCGGC
TCTTTCGCCGGCCGTGCCAAGCGCGACAGCTGGGTCGAACAGGCCGCGCTGCTCGCGGCGGGCGATACCGCCGCCTACGA
AGCCCGTTTCGGGAAGCTCTGA

Upstream 100 bases:

>100_bases
TGCTGTGGGTCAGGGCGTTCGGTCCCGAAGATCGCGTCCTGTTCCGCAAGCAACAGGCAGCCTGAGGGCTTTCGGCCCGG
AATTGTTTGGGGGTGAATTG

Downstream 100 bases:

>100_bases
CTATTCCATCGCTTGCGCCGGGGCCACTGGCTCCGGCGCGTCTGTTGGCGCAGAGCGGCGGCATCGCGCGACGAGATCAC
GCACCGGCCCGCCGCCCGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MVVMLETNQIVLAAVVLIVAFVAWWLWGRSKPTTRKREYTDVLSEGAAPAERNTALIDAPSAAALVTPPPGVGTLAGVGE
VVAHAAAEELLEAAAPPAQPTAASSAAPATAAPASGDDLGRIKGVGPKLKALLASLGVTSFSQIAAWTDEDIARIDARLG
SFAGRAKRDSWVEQAALLAAGDTAAYEARFGKL

Sequences:

>Translated_193_residues
MVVMLETNQIVLAAVVLIVAFVAWWLWGRSKPTTRKREYTDVLSEGAAPAERNTALIDAPSAAALVTPPPGVGTLAGVGE
VVAHAAAEELLEAAAPPAQPTAASSAAPATAAPASGDDLGRIKGVGPKLKALLASLGVTSFSQIAAWTDEDIARIDARLG
SFAGRAKRDSWVEQAALLAAGDTAAYEARFGKL
>Mature_193_residues
MVVMLETNQIVLAAVVLIVAFVAWWLWGRSKPTTRKREYTDVLSEGAAPAERNTALIDAPSAAALVTPPPGVGTLAGVGE
VVAHAAAEELLEAAAPPAQPTAASSAAPATAAPASGDDLGRIKGVGPKLKALLASLGVTSFSQIAAWTDEDIARIDARLG
SFAGRAKRDSWVEQAALLAAGDTAAYEARFGKL

Specific function: This protein binds to 23S rRNA in the presence of protein L20 [H]

COG id: COG3743

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L21P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR001787 [H]

Pfam domain/function: PF00829 Ribosomal_L21p [H]

EC number: NA

Molecular weight: Translated: 19768; Mature: 19768

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVMLETNQIVLAAVVLIVAFVAWWLWGRSKPTTRKREYTDVLSEGAAPAERNTALIDAP
CEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECC
SAAALVTPPPGVGTLAGVGEVVAHAAAEELLEAAAPPAQPTAASSAAPATAAPASGDDLG
CCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCH
RIKGVGPKLKALLASLGVTSFSQIAAWTDEDIARIDARLGSFAGRAKRDSWVEQAALLAA
HHCCCCHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
GDTAAYEARFGKL
CCHHHHHHHCCCC
>Mature Secondary Structure
MVVMLETNQIVLAAVVLIVAFVAWWLWGRSKPTTRKREYTDVLSEGAAPAERNTALIDAP
CEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECC
SAAALVTPPPGVGTLAGVGEVVAHAAAEELLEAAAPPAQPTAASSAAPATAAPASGDDLG
CCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCH
RIKGVGPKLKALLASLGVTSFSQIAAWTDEDIARIDARLGSFAGRAKRDSWVEQAALLAA
HHCCCCHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
GDTAAYEARFGKL
CCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA