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The map label for this gene is yhcS [C]

Identifier: 87200778

GI number: 87200778

Start: 2984834

End: 2985742

Strand: Direct

Name: yhcS [C]

Synonym: Saro_2765

Alternate gene names: 87200778

Gene position: 2984834-2985742 (Clockwise)

Preceding gene: 87200777

Following gene: 87200782

Centisome position: 83.81

GC content: 64.25

Gene sequence:

>909_bases
GTGGACCGCTGGCAATCCATGCGAATCTTTGCCGAAGTGGCGCGGCATTCAAGCTTTGCCGAAGCTGCGCGGCGCCTTCA
CATGAGCGCGCCCGCAGTGACGCGTGCCGTTGCCGCGCTCGAGGAGCATATCGGCACTCGCCTGCTGGTACGCTCCACCC
GCCTCGTCAAGGTTACGGAAGCCGGCGCTCGCTACTATGCCGATTGCCAGCGCATTCTGGCCGAGATCGCCGAGGCCGAA
GCAATGGCGGCCGGGTCCTATGCGACGCCATCGGGGACGCTCACGGTCACCGCGCCGGCCATGTTCGGTCGCATGTACGT
TCTGCCGATCCTCACCGAATACCTCGACCGCTATCCGCAGGTCATCGGCCGTACGCTGTTCGTGGACCGGCCGGTCAATC
TGATCGAGGAAGGCGTGGACCTGGCAGTCCGCATTGGACATCTCACGGACTCGTCGATGATCGCAACCCGCGTCGGCTCT
TCCCGCCTGGTGGTGGTCGGCGCGCCGGATTATCTGCGCGAGCATGGTGTGCCGGAAAATCCGGCAGATCTTGGCCGCTT
TCGCATTGCGGCGTCGACAGCAGCATGGGCCTCGCCCGAATGGCAGTTTGCGAATGATGTCAAAGTGCGGGTCGAACCGG
CTCTGCTCTGCAACACCAACGACGCGGCAATCAATGCATCGCTGGCGGGCTGGGGATTGGCGCGGGTGCTGGACTATCAG
GTGGGTGCGGCGATTGCCGATGGGCGGCTTCAGGTCGTCCTGGAAAGCCACGAGCCACCGCCTTTTCCGATCCACGTCAT
CCACCCCGAAGGGCTTCACGCTCCAGCCAAGGTCCGCGCCTTCATCGATCTTGCCGTGGCCAAGCTGCGATCGAGCAGGC
TGCGCACCGGCGACGACCTGACAGGGTAA

Upstream 100 bases:

>100_bases
GAGCAGGGCGCCAGGGCCGGACTATCTCGGTGCCCTGCTCGACAGCGGTGCAGGGACATTGCCGGAAACGCTGGCGCATA
TTCTTTAGAGGAAACCGCCT

Downstream 100 bases:

>100_bases
ACCGCAAGATGCGTCTGGCCTGCTGGCTACCGCTTCTGCGGGATGTGGGGAGAAGCAGTTTGGCCTGTGGGGGATCAGCC
GAAGGCCATGGGCAAACGAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MDRWQSMRIFAEVARHSSFAEAARRLHMSAPAVTRAVAALEEHIGTRLLVRSTRLVKVTEAGARYYADCQRILAEIAEAE
AMAAGSYATPSGTLTVTAPAMFGRMYVLPILTEYLDRYPQVIGRTLFVDRPVNLIEEGVDLAVRIGHLTDSSMIATRVGS
SRLVVVGAPDYLREHGVPENPADLGRFRIAASTAAWASPEWQFANDVKVRVEPALLCNTNDAAINASLAGWGLARVLDYQ
VGAAIADGRLQVVLESHEPPPFPIHVIHPEGLHAPAKVRAFIDLAVAKLRSSRLRTGDDLTG

Sequences:

>Translated_302_residues
MDRWQSMRIFAEVARHSSFAEAARRLHMSAPAVTRAVAALEEHIGTRLLVRSTRLVKVTEAGARYYADCQRILAEIAEAE
AMAAGSYATPSGTLTVTAPAMFGRMYVLPILTEYLDRYPQVIGRTLFVDRPVNLIEEGVDLAVRIGHLTDSSMIATRVGS
SRLVVVGAPDYLREHGVPENPADLGRFRIAASTAAWASPEWQFANDVKVRVEPALLCNTNDAAINASLAGWGLARVLDYQ
VGAAIADGRLQVVLESHEPPPFPIHVIHPEGLHAPAKVRAFIDLAVAKLRSSRLRTGDDLTG
>Mature_302_residues
MDRWQSMRIFAEVARHSSFAEAARRLHMSAPAVTRAVAALEEHIGTRLLVRSTRLVKVTEAGARYYADCQRILAEIAEAE
AMAAGSYATPSGTLTVTAPAMFGRMYVLPILTEYLDRYPQVIGRTLFVDRPVNLIEEGVDLAVRIGHLTDSSMIATRVGS
SRLVVVGAPDYLREHGVPENPADLGRFRIAASTAAWASPEWQFANDVKVRVEPALLCNTNDAAINASLAGWGLARVLDYQ
VGAAIADGRLQVVLESHEPPPFPIHVIHPEGLHAPAKVRAFIDLAVAKLRSSRLRTGDDLTG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=31.6326530612245, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1786401, Length=283, Percent_Identity=32.1554770318021, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1787128, Length=278, Percent_Identity=29.8561151079137, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI145693193, Length=288, Percent_Identity=29.1666666666667, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1787589, Length=282, Percent_Identity=33.3333333333333, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI87081978, Length=285, Percent_Identity=30.1754385964912, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=24.390243902439, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788706, Length=208, Percent_Identity=28.3653846153846, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789173, Length=248, Percent_Identity=26.6129032258064, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1787879, Length=117, Percent_Identity=36.7521367521368, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787601, Length=124, Percent_Identity=28.2258064516129, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI157672245, Length=112, Percent_Identity=30.3571428571429, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32852; Mature: 32852

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRWQSMRIFAEVARHSSFAEAARRLHMSAPAVTRAVAALEEHIGTRLLVRSTRLVKVTE
CCHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCEEEEEEH
AGARYYADCQRILAEIAEAEAMAAGSYATPSGTLTVTAPAMFGRMYVLPILTEYLDRYPQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHH
VIGRTLFVDRPVNLIEEGVDLAVRIGHLTDSSMIATRVGSSRLVVVGAPDYLREHGVPEN
HHCCEEEECCCHHHHHCCCCEEEEEECCCCCHHHHEECCCCEEEEEECCHHHHHCCCCCC
PADLGRFRIAASTAAWASPEWQFANDVKVRVEPALLCNTNDAAINASLAGWGLARVLDYQ
CHHHHHEEEEECHHCCCCCCCCCCCCEEEEEEEEEEECCCCCEEECHHHHHHHHHHHHHH
VGAAIADGRLQVVLESHEPPPFPIHVIHPEGLHAPAKVRAFIDLAVAKLRSSRLRTGDDL
HCCEEECCEEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
TG
CC
>Mature Secondary Structure
MDRWQSMRIFAEVARHSSFAEAARRLHMSAPAVTRAVAALEEHIGTRLLVRSTRLVKVTE
CCHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCEEEEEEH
AGARYYADCQRILAEIAEAEAMAAGSYATPSGTLTVTAPAMFGRMYVLPILTEYLDRYPQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHH
VIGRTLFVDRPVNLIEEGVDLAVRIGHLTDSSMIATRVGSSRLVVVGAPDYLREHGVPEN
HHCCEEEECCCHHHHHCCCCEEEEEECCCCCHHHHEECCCCEEEEEECCHHHHHCCCCCC
PADLGRFRIAASTAAWASPEWQFANDVKVRVEPALLCNTNDAAINASLAGWGLARVLDYQ
CHHHHHEEEEECHHCCCCCCCCCCCCEEEEEEEEEEECCCCCEEECHHHHHHHHHHHHHH
VGAAIADGRLQVVLESHEPPPFPIHVIHPEGLHAPAKVRAFIDLAVAKLRSSRLRTGDDL
HCCEEECCEEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
TG
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]