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The map label for this gene is yafC [H]

Identifier: 87200782

GI number: 87200782

Start: 2988513

End: 2989418

Strand: Direct

Name: yafC [H]

Synonym: Saro_2769

Alternate gene names: 87200782

Gene position: 2988513-2989418 (Clockwise)

Preceding gene: 87200778

Following gene: 87200783

Centisome position: 83.91

GC content: 62.47

Gene sequence:

>906_bases
GTGCACGATCCCCATTCATTTTTGAATGGACCACAAGTGGCTGCCGCACCTCTCGAATGGAGTGACCTGCGTATTTTCCT
CGCGATCGCGCGCGAAGGATCGCTGGGGCGCGCTGGGCGCCGACTTGGGCAATCCCAGCCAACGATGGGGCGGCGATTGC
GAGCGCTCGAGGCCACCGTGGGAGCAATGCTCTTTCAGCGCTCTTCTTCCGGCCTGACCTTGACCGACGAGGGCCAGGTC
ATGCTGCGCCATGCTGAGGTCATGGAAGGCGAGGCGCTGGCACTGGAGCGGGAGTTGACCGGTCGGGACGGTTCTCTCGA
AGGCCTGATACGGGTGAGCTGCTCGGACTGGTTCGGTCGCATCATGCTGGCGCCGGTTGTCGCGGAGTTTACCCGGCTGC
ATCCCGCAGTCGTTGTCGAGGTACTCACCGATGCCCGTGTATACAGCCTGGTGCGGCGCGAGGCCGATCTGGTCATCCGC
ATCGCCGGCTTCGACGAACCGGAAGTGGTCGCGCGGAGGCTGACGACCATTCGCTATGGCGTCTACGCGAAACCGGGAAC
GGGGCGTCCGGTTGCGGGCGACGGCGAAGGTTGCCCATTGATCGTGATGGACACCGCATTTGGCGAAATGCCCGATGTCG
CTTGGCTGATGCAGACTTTTCCGAACGCGCGCATATCGGCGCGGAGCAATAGTCGCGATATCCAGGCCCAACTCTGTGCA
CTTGGCGCTGGCGTCGCTGTTCTTCCTTTGCCGCTGGGCGATGCAACCGCGCAAATCGGGAGACTTGAGCTGGATGCGGA
ACCGCCAACCCGCGATACCTGGATCGGTTTCCACAAGGACTTGGTCCGATTGCCCAGGCTACGTGCGTTCATCGACTTGC
TCGTGGAGCGTATTCCGTCCTGCTGA

Upstream 100 bases:

>100_bases
CCTCAACAACGGCTGCGATCATGGTTGGCGTGGTCATGGTCCATCTCCTGCTGATGACCAGAAGATGAGCGCATTCCGCT
TTGACTGGCAGTCATGAAAA

Downstream 100 bases:

>100_bases
ATTCGTGTTGGGCTGCACTGCCAAGCCAACCATGCCTAGGTCACGTCTCCCCGTTTTTCGGAAAGCTCGATGATGCCTGC
GACAACCCGTTCAATCGGGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MHDPHSFLNGPQVAAAPLEWSDLRIFLAIAREGSLGRAGRRLGQSQPTMGRRLRALEATVGAMLFQRSSSGLTLTDEGQV
MLRHAEVMEGEALALERELTGRDGSLEGLIRVSCSDWFGRIMLAPVVAEFTRLHPAVVVEVLTDARVYSLVRREADLVIR
IAGFDEPEVVARRLTTIRYGVYAKPGTGRPVAGDGEGCPLIVMDTAFGEMPDVAWLMQTFPNARISARSNSRDIQAQLCA
LGAGVAVLPLPLGDATAQIGRLELDAEPPTRDTWIGFHKDLVRLPRLRAFIDLLVERIPSC

Sequences:

>Translated_301_residues
MHDPHSFLNGPQVAAAPLEWSDLRIFLAIAREGSLGRAGRRLGQSQPTMGRRLRALEATVGAMLFQRSSSGLTLTDEGQV
MLRHAEVMEGEALALERELTGRDGSLEGLIRVSCSDWFGRIMLAPVVAEFTRLHPAVVVEVLTDARVYSLVRREADLVIR
IAGFDEPEVVARRLTTIRYGVYAKPGTGRPVAGDGEGCPLIVMDTAFGEMPDVAWLMQTFPNARISARSNSRDIQAQLCA
LGAGVAVLPLPLGDATAQIGRLELDAEPPTRDTWIGFHKDLVRLPRLRAFIDLLVERIPSC
>Mature_301_residues
MHDPHSFLNGPQVAAAPLEWSDLRIFLAIAREGSLGRAGRRLGQSQPTMGRRLRALEATVGAMLFQRSSSGLTLTDEGQV
MLRHAEVMEGEALALERELTGRDGSLEGLIRVSCSDWFGRIMLAPVVAEFTRLHPAVVVEVLTDARVYSLVRREADLVIR
IAGFDEPEVVARRLTTIRYGVYAKPGTGRPVAGDGEGCPLIVMDTAFGEMPDVAWLMQTFPNARISARSNSRDIQAQLCA
LGAGVAVLPLPLGDATAQIGRLELDAEPPTRDTWIGFHKDLVRLPRLRAFIDLLVERIPSC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=26.5993265993266, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787601, Length=234, Percent_Identity=26.4957264957265, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789440, Length=288, Percent_Identity=26.7361111111111, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI87081978, Length=240, Percent_Identity=27.0833333333333, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI157672245, Length=157, Percent_Identity=29.9363057324841, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790208, Length=245, Percent_Identity=28.1632653061224, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI145693193, Length=152, Percent_Identity=26.3157894736842, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787128, Length=154, Percent_Identity=24.6753246753247, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32899; Mature: 32899

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDPHSFLNGPQVAAAPLEWSDLRIFLAIAREGSLGRAGRRLGQSQPTMGRRLRALEATV
CCCCHHHCCCCCEEECCCCCCCEEEEEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHH
GAMLFQRSSSGLTLTDEGQVMLRHAEVMEGEALALERELTGRDGSLEGLIRVSCSDWFGR
HHHHHHCCCCCEEEECCCCEEEEHHHHHCCCHHEEEHHHCCCCCCCCEEEEEECHHHHHH
IMLAPVVAEFTRLHPAVVVEVLTDARVYSLVRREADLVIRIAGFDEPEVVARRLTTIRYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCC
VYAKPGTGRPVAGDGEGCPLIVMDTAFGEMPDVAWLMQTFPNARISARSNSRDIQAQLCA
EEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHH
LGAGVAVLPLPLGDATAQIGRLELDAEPPTRDTWIGFHKDLVRLPRLRAFIDLLVERIPS
HCCCEEEEEECCCCHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
C
C
>Mature Secondary Structure
MHDPHSFLNGPQVAAAPLEWSDLRIFLAIAREGSLGRAGRRLGQSQPTMGRRLRALEATV
CCCCHHHCCCCCEEECCCCCCCEEEEEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHH
GAMLFQRSSSGLTLTDEGQVMLRHAEVMEGEALALERELTGRDGSLEGLIRVSCSDWFGR
HHHHHHCCCCCEEEECCCCEEEEHHHHHCCCHHEEEHHHCCCCCCCCEEEEEECHHHHHH
IMLAPVVAEFTRLHPAVVVEVLTDARVYSLVRREADLVIRIAGFDEPEVVARRLTTIRYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCC
VYAKPGTGRPVAGDGEGCPLIVMDTAFGEMPDVAWLMQTFPNARISARSNSRDIQAQLCA
EEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHH
LGAGVAVLPLPLGDATAQIGRLELDAEPPTRDTWIGFHKDLVRLPRLRAFIDLLVERIPS
HCCCEEEEEECCCCHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
C
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]