| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87200742
Identifier: 87200742
GI number: 87200742
Start: 2957689
End: 2958120
Strand: Direct
Name: 87200742
Synonym: Saro_2729
Alternate gene names: NA
Gene position: 2957689-2958120 (Clockwise)
Preceding gene: 87200741
Following gene: 87200743
Centisome position: 83.04
GC content: 65.51
Gene sequence:
>432_bases ATGGCGGTAGGACTGCAAAAGCTCGTCCGGCGCGCGCTGCTGTCGCGCCTGAAGGCTGACGCTGCCCTGACCGCTCTAGT CCCGGCGGCATCGATCAATCCGCCAGGCGCTCCGGCGTGGCCTTTCATCGTCCTTCGCGCGCCGGTCACGCAGCGGCTCA AGGCGGCCTGCGTCAACGGTGGTCAGGGCTCGTGGGATGTGCATGCTTTCGCAGGCCCTCGTCTGTCAGGTGGGGCCGTC GTGGAAACTGCCGAGGATCATGCAGGATCGATCGGCGCGGCCATCGAAACCGCTCTGGCGGACAACTGGCTAGCGCTACC TGCAGGTTCCCGTGCCCGGATCAGGCTCAGCGATATCCGGTTGCTGACCGACGGCGACCCCGACCACTATCACTGGTTCT GCCAGTGCAATTGGCGAGTGCTTTCGGCCTGA
Upstream 100 bases:
>100_bases GCTTGGACCTATCGCACCCCGGAAGTGACGATCGACTATCTGGCCGGGGAACATCAGGTCCGGGACGAAATCGCGGCACA GGCACCGAAGGAGAAGCGCA
Downstream 100 bases:
>100_bases TGGCGTGATACCTTCGCGCCGTGGACTACCTCACCAAGGACCAACTCGGCTCGCTGCTGGCCGTGCTGATCGCGCAGTTG CAGCGCAATGGCGTCCTGAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 143; Mature: 142
Protein sequence:
>143_residues MAVGLQKLVRRALLSRLKADAALTALVPAASINPPGAPAWPFIVLRAPVTQRLKAACVNGGQGSWDVHAFAGPRLSGGAV VETAEDHAGSIGAAIETALADNWLALPAGSRARIRLSDIRLLTDGDPDHYHWFCQCNWRVLSA
Sequences:
>Translated_143_residues MAVGLQKLVRRALLSRLKADAALTALVPAASINPPGAPAWPFIVLRAPVTQRLKAACVNGGQGSWDVHAFAGPRLSGGAV VETAEDHAGSIGAAIETALADNWLALPAGSRARIRLSDIRLLTDGDPDHYHWFCQCNWRVLSA >Mature_142_residues AVGLQKLVRRALLSRLKADAALTALVPAASINPPGAPAWPFIVLRAPVTQRLKAACVNGGQGSWDVHAFAGPRLSGGAVV ETAEDHAGSIGAAIETALADNWLALPAGSRARIRLSDIRLLTDGDPDHYHWFCQCNWRVLSA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15126; Mature: 14994
Theoretical pI: Translated: 8.95; Mature: 8.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVGLQKLVRRALLSRLKADAALTALVPAASINPPGAPAWPFIVLRAPVTQRLKAACVNG CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCC GQGSWDVHAFAGPRLSGGAVVETAEDHAGSIGAAIETALADNWLALPAGSRARIRLSDIR CCCCEEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEE LLTDGDPDHYHWFCQCNWRVLSA EEECCCCCCEEEEEEEEEEEECC >Mature Secondary Structure AVGLQKLVRRALLSRLKADAALTALVPAASINPPGAPAWPFIVLRAPVTQRLKAACVNG CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCC GQGSWDVHAFAGPRLSGGAVVETAEDHAGSIGAAIETALADNWLALPAGSRARIRLSDIR CCCCEEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEE LLTDGDPDHYHWFCQCNWRVLSA EEECCCCCCEEEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA