Definition Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome.
Accession NC_007794
Length 3,561,584

Click here to switch to the map view.

The map label for this gene is 87200700

Identifier: 87200700

GI number: 87200700

Start: 2926498

End: 2927220

Strand: Direct

Name: 87200700

Synonym: Saro_2687

Alternate gene names: NA

Gene position: 2926498-2927220 (Clockwise)

Preceding gene: 87200698

Following gene: 87200704

Centisome position: 82.17

GC content: 67.22

Gene sequence:

>723_bases
ATGACCGCTGCCGCCGACACCATCCGCTCCTTCATCGACCTGCGCGATTTCGCTGCCCGCACCGACCTGCCCGCAGCCAC
CGGCGACGGGGCCTGGACCGCGAACCGCACGTCGCTGCCCCTGCCCGAAGGCCCGGTTTCCATCGCCGTGCTGCGCCTTG
GCGGCAAGGGCGCGGAAGCGGCGTTGGCGGCCGACGAGTTCGTCATCGTGCTGGAGGGCGCCCTGCTGGTCGAACACCAT
GGCGAAGCGTTTGAAATTCCTGCCGGAAAAAGCGCGGTGATCCCGGCTGGCGTAGCCTTCGACTGGACCGCGCGCGCCGC
AACCACCGCCGTGGTCATGCGCTGCGCCAGCGGCCCCGCCGGCGCGGACAAGCCTGTTCCGATCGACGAGAGCGCCGAAT
TGGCTCCCTCGGGCGCGCCGCTCGCCGAACTGCTGGTCGGCCCCACCCCGTCCTGCCGCAACTTCACCGACTACCGTTCG
GAAAATGGCGAATTCGTGTGCGGGACCTGGGATTCCACGCCTTATCATCGCCTGTCGATGCCCTACCGGCACTACGAGCT
GATGCACCTCCTGCAGGGCGCGGTGACTTTCGTCGATGGCGCAGGGCGGGAAGCAACCTTCGGGGAAGGCGACGTTTTCC
TGGTCGAACAAGGCGCCCATTGCTCTTGGGAAAGCCGCGTCCACGTGAAGAAGGTCTACGCGATCTACCGTCCGGCTTCC
TGA

Upstream 100 bases:

>100_bases
CGCGCTTGCGGAAAATCGTGCCGCGAAGACGTCCAACACGCCAGCATCTCCGCTCGCTCGCCTGCTAGCGTCCCCGCAGT
ATCAACTTGCAGAGCCCGCC

Downstream 100 bases:

>100_bases
GGGCGGTCCAGCTCCGCGCGCAGCTTCGCCAGGACTTCGGCGTCGCTGTCCGCCGGCGAGATCGTGTCGCGAAACTCATC
ATCGCGGCTGTAAATCAAGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MTAAADTIRSFIDLRDFAARTDLPAATGDGAWTANRTSLPLPEGPVSIAVLRLGGKGAEAALAADEFVIVLEGALLVEHH
GEAFEIPAGKSAVIPAGVAFDWTARAATTAVVMRCASGPAGADKPVPIDESAELAPSGAPLAELLVGPTPSCRNFTDYRS
ENGEFVCGTWDSTPYHRLSMPYRHYELMHLLQGAVTFVDGAGREATFGEGDVFLVEQGAHCSWESRVHVKKVYAIYRPAS

Sequences:

>Translated_240_residues
MTAAADTIRSFIDLRDFAARTDLPAATGDGAWTANRTSLPLPEGPVSIAVLRLGGKGAEAALAADEFVIVLEGALLVEHH
GEAFEIPAGKSAVIPAGVAFDWTARAATTAVVMRCASGPAGADKPVPIDESAELAPSGAPLAELLVGPTPSCRNFTDYRS
ENGEFVCGTWDSTPYHRLSMPYRHYELMHLLQGAVTFVDGAGREATFGEGDVFLVEQGAHCSWESRVHVKKVYAIYRPAS
>Mature_239_residues
TAAADTIRSFIDLRDFAARTDLPAATGDGAWTANRTSLPLPEGPVSIAVLRLGGKGAEAALAADEFVIVLEGALLVEHHG
EAFEIPAGKSAVIPAGVAFDWTARAATTAVVMRCASGPAGADKPVPIDESAELAPSGAPLAELLVGPTPSCRNFTDYRSE
NGEFVCGTWDSTPYHRLSMPYRHYELMHLLQGAVTFVDGAGREATFGEGDVFLVEQGAHCSWESRVHVKKVYAIYRPAS

Specific function: Unknown

COG id: COG3450

COG function: function code R; Predicted enzyme of the cupin superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25413; Mature: 25282

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAAADTIRSFIDLRDFAARTDLPAATGDGAWTANRTSLPLPEGPVSIAVLRLGGKGAEA
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCEEEEEEEECCCCCCC
ALAADEFVIVLEGALLVEHHGEAFEIPAGKSAVIPAGVAFDWTARAATTAVVMRCASGPA
EECCCCEEEEEECEEEEEECCCEEECCCCCCEEECCCEEECCHHHHHHHHHHHHHCCCCC
GADKPVPIDESAELAPSGAPLAELLVGPTPSCRNFTDYRSENGEFVCGTWDSTPYHRLSM
CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHCCCCCEEEECCCCCCCEECCC
PYRHYELMHLLQGAVTFVDGAGREATFGEGDVFLVEQGAHCSWESRVHVKKVYAIYRPAS
CHHHHHHHHHHHHHHEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEEECCCC
>Mature Secondary Structure 
TAAADTIRSFIDLRDFAARTDLPAATGDGAWTANRTSLPLPEGPVSIAVLRLGGKGAEA
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCEEEEEEEECCCCCCC
ALAADEFVIVLEGALLVEHHGEAFEIPAGKSAVIPAGVAFDWTARAATTAVVMRCASGPA
EECCCCEEEEEECEEEEEECCCEEECCCCCCEEECCCEEECCHHHHHHHHHHHHHCCCCC
GADKPVPIDESAELAPSGAPLAELLVGPTPSCRNFTDYRSENGEFVCGTWDSTPYHRLSM
CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHCCCCCEEEECCCCCCCEECCC
PYRHYELMHLLQGAVTFVDGAGREATFGEGDVFLVEQGAHCSWESRVHVKKVYAIYRPAS
CHHHHHHHHHHHHHHEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA