| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87200685
Identifier: 87200685
GI number: 87200685
Start: 2909887
End: 2911326
Strand: Reverse
Name: 87200685
Synonym: Saro_2672
Alternate gene names: NA
Gene position: 2911326-2909887 (Counterclockwise)
Preceding gene: 87200687
Following gene: 87200682
Centisome position: 81.74
GC content: 65.0
Gene sequence:
>1440_bases ATGAAGACCGTAGCGCGCGTCTCCGTCATCGCGCTGGCCTGTGCCGCCGGGTGGAGCATCCCGGCCCATGCATCGACCGC CAAGCCCGACCTTGCAGCGCTGCAGGCGCAGCTCCAGCAGATGCAGTCGCAGATGCAGAGCCAGATGGACGCCATGCAGG CCATGCAGGCGCAGATCGCGACGCTGCAGAACCAGCTCGCCGAGGCAAAGGCCAAGGGTGACGCCACCGCCACGGCGGTT GCCGCGATCCCCGCGCCCACCGTCACCGGCAAGCCGCCCGTCGCGATCACGTGGGACGGTGGCCCGCGCATCGAATCGCC GGTCGATCCCAAGAATCCGAAGGCTGGCAAGTGGAGCTTCAAGCCACGCGGACGTCTTCAGATCGATGCGGCATCGGTCA TGGCGCCGTCCTCCATCGGCAGCAAGAGCCTGGGGATCGGTTCTGAATTCCGCCGGGCCTACCTTGGCGTGGACGGCACC ATTCCCGGCAACTTCGGATATCGCATCGAGGCCGATTTCGCGAACAGCAGCGTCGAGCTGACCGACGTGTTCCTGACCTA CAACGGCATCCGCAACGTTACGGTCACCCTCGGCCAGCAGAAGCCGTTCGAGTCGATGGAGGACACCGAGTCCGACCTCT TCACCAGCTTCATGGAACGCGCCTCGTTCAATACCGCGTTCGGCTTCGAGCGCCGCCTCGGCCTTTCGGCGCAGTACCAG AAGGGCATGGTGCTGGCCCAGGTCGGCGCGTTCACCGACAACGTGTCCGACCTCAACGCCGACAGCAACAACAGCTATTC GATCGACGGTCGCTTCGCGTTGCAGCCCAAGCTCATGGGCGGGCAACTCCACCTCGGTGGCTCTGCCCACTACCACGACC TGAACGATGGCTATTCAACCGTGCGCTATCGCGCTCGGCCCTTCACGCACACCACCGACGTGCGCTTCGTCGACACCAAG GCAATCAGCGCGTTGTCGGAAACGAACTATGGCCTGGAGTTCGCATGGACCGGCGGGCCGTTGCACTTCGCCGCGGAATC GCAGTGGATGAAGACCAATCGTCCCGGCGCGCTGGCCGACCCGACGTTCAACGGCGGCTATGCCGAGGCGGGCCTGTTCC TGACCAAGGGCGACACGCTGCCCTATCGCCTCGCGGATGGTGCCTGGGGACGGATCAAGCCGAAGAATCCGGTCGACAAG GGCGGCATCGGTGCGGTTCAGGTAAACGTCCGCTACGACTGGCTCGACCTCAACGACAACGGGGTGATCGGTGGCCGCCA GCAGCTCGCCGGCGCGTCGTTGCTGTGGGTACCGACCGACTACGTCCGCTTCATTCTGGACTACGGCCACATGTGGATCA ACGATGCGGCGGTGGCTGCGGGCACCGACCGCAGCTATTCGGCGGACGTGCTCGGGATGCGCGCGCAGTTCGACTTCTGA
Upstream 100 bases:
>100_bases TTGCAGCAATTTTGCCGTCAACAAACTGTAACGAATCAGAAATAATAGGGCCACCAATCCGGAGCCGACCACGGCCCGGA TCTGAGCGAAGGATTCTCGA
Downstream 100 bases:
>100_bases TATTGCAAGCATTGAAAAGCCCGCCGTTCCCTGAGGAGCGGCGGGCTTTTTCGTGCCTTTGGCAGAGGGGCATCAGGCGA TGCGCGAGACCCATCCGTGG
Product: phosphate-selective porin O and P
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 479; Mature: 479
Protein sequence:
>479_residues MKTVARVSVIALACAAGWSIPAHASTAKPDLAALQAQLQQMQSQMQSQMDAMQAMQAQIATLQNQLAEAKAKGDATATAV AAIPAPTVTGKPPVAITWDGGPRIESPVDPKNPKAGKWSFKPRGRLQIDAASVMAPSSIGSKSLGIGSEFRRAYLGVDGT IPGNFGYRIEADFANSSVELTDVFLTYNGIRNVTVTLGQQKPFESMEDTESDLFTSFMERASFNTAFGFERRLGLSAQYQ KGMVLAQVGAFTDNVSDLNADSNNSYSIDGRFALQPKLMGGQLHLGGSAHYHDLNDGYSTVRYRARPFTHTTDVRFVDTK AISALSETNYGLEFAWTGGPLHFAAESQWMKTNRPGALADPTFNGGYAEAGLFLTKGDTLPYRLADGAWGRIKPKNPVDK GGIGAVQVNVRYDWLDLNDNGVIGGRQQLAGASLLWVPTDYVRFILDYGHMWINDAAVAAGTDRSYSADVLGMRAQFDF
Sequences:
>Translated_479_residues MKTVARVSVIALACAAGWSIPAHASTAKPDLAALQAQLQQMQSQMQSQMDAMQAMQAQIATLQNQLAEAKAKGDATATAV AAIPAPTVTGKPPVAITWDGGPRIESPVDPKNPKAGKWSFKPRGRLQIDAASVMAPSSIGSKSLGIGSEFRRAYLGVDGT IPGNFGYRIEADFANSSVELTDVFLTYNGIRNVTVTLGQQKPFESMEDTESDLFTSFMERASFNTAFGFERRLGLSAQYQ KGMVLAQVGAFTDNVSDLNADSNNSYSIDGRFALQPKLMGGQLHLGGSAHYHDLNDGYSTVRYRARPFTHTTDVRFVDTK AISALSETNYGLEFAWTGGPLHFAAESQWMKTNRPGALADPTFNGGYAEAGLFLTKGDTLPYRLADGAWGRIKPKNPVDK GGIGAVQVNVRYDWLDLNDNGVIGGRQQLAGASLLWVPTDYVRFILDYGHMWINDAAVAAGTDRSYSADVLGMRAQFDF >Mature_479_residues MKTVARVSVIALACAAGWSIPAHASTAKPDLAALQAQLQQMQSQMQSQMDAMQAMQAQIATLQNQLAEAKAKGDATATAV AAIPAPTVTGKPPVAITWDGGPRIESPVDPKNPKAGKWSFKPRGRLQIDAASVMAPSSIGSKSLGIGSEFRRAYLGVDGT IPGNFGYRIEADFANSSVELTDVFLTYNGIRNVTVTLGQQKPFESMEDTESDLFTSFMERASFNTAFGFERRLGLSAQYQ KGMVLAQVGAFTDNVSDLNADSNNSYSIDGRFALQPKLMGGQLHLGGSAHYHDLNDGYSTVRYRARPFTHTTDVRFVDTK AISALSETNYGLEFAWTGGPLHFAAESQWMKTNRPGALADPTFNGGYAEAGLFLTKGDTLPYRLADGAWGRIKPKNPVDK GGIGAVQVNVRYDWLDLNDNGVIGGRQQLAGASLLWVPTDYVRFILDYGHMWINDAAVAAGTDRSYSADVLGMRAQFDF
Specific function: Unknown
COG id: COG3746
COG function: function code P; Phosphate-selective porin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010870 [H]
Pfam domain/function: PF07396 Porin_O_P [H]
EC number: NA
Molecular weight: Translated: 51694; Mature: 51694
Theoretical pI: Translated: 6.64; Mature: 6.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTVARVSVIALACAAGWSIPAHASTAKPDLAALQAQLQQMQSQMQSQMDAMQAMQAQIA CCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLQNQLAEAKAKGDATATAVAAIPAPTVTGKPPVAITWDGGPRIESPVDPKNPKAGKWSF HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC KPRGRLQIDAASVMAPSSIGSKSLGIGSEFRRAYLGVDGTIPGNFGYRIEADFANSSVEL CCCCCEEEEHHHEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCEEE TDVFLTYNGIRNVTVTLGQQKPFESMEDTESDLFTSFMERASFNTAFGFERRLGLSAQYQ EEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHH KGMVLAQVGAFTDNVSDLNADSNNSYSIDGRFALQPKLMGGQLHLGGSAHYHDLNDGYST CCEEEEEECCCCCCCCCCCCCCCCCEEECCEEEECCEECCCEEEECCCCCCCCCCCCCCE VRYRARPFTHTTDVRFVDTKAISALSETNYGLEFAWTGGPLHFAAESQWMKTNRPGALAD EEEECCCCCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCEEECCCCCHHCCCCCCCCCC PTFNGGYAEAGLFLTKGDTLPYRLADGAWGRIKPKNPVDKGGIGAVQVNVRYDWLDLNDN CCCCCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC GVIGGRQQLAGASLLWVPTDYVRFILDYGHMWINDAAVAAGTDRSYSADVLGMRAQFDF CCCCCHHHHCCCEEEEECHHHHHHHHHHCCEEECCCEEECCCCCCCCCCEEEEEEECCC >Mature Secondary Structure MKTVARVSVIALACAAGWSIPAHASTAKPDLAALQAQLQQMQSQMQSQMDAMQAMQAQIA CCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLQNQLAEAKAKGDATATAVAAIPAPTVTGKPPVAITWDGGPRIESPVDPKNPKAGKWSF HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC KPRGRLQIDAASVMAPSSIGSKSLGIGSEFRRAYLGVDGTIPGNFGYRIEADFANSSVEL CCCCCEEEEHHHEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCEEE TDVFLTYNGIRNVTVTLGQQKPFESMEDTESDLFTSFMERASFNTAFGFERRLGLSAQYQ EEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHH KGMVLAQVGAFTDNVSDLNADSNNSYSIDGRFALQPKLMGGQLHLGGSAHYHDLNDGYST CCEEEEEECCCCCCCCCCCCCCCCCEEECCEEEECCEECCCEEEECCCCCCCCCCCCCCE VRYRARPFTHTTDVRFVDTKAISALSETNYGLEFAWTGGPLHFAAESQWMKTNRPGALAD EEEECCCCCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCEEECCCCCHHCCCCCCCCCC PTFNGGYAEAGLFLTKGDTLPYRLADGAWGRIKPKNPVDKGGIGAVQVNVRYDWLDLNDN CCCCCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC GVIGGRQQLAGASLLWVPTDYVRFILDYGHMWINDAAVAAGTDRSYSADVLGMRAQFDF CCCCCHHHHCCCEEEEECHHHHHHHHHHCCEEECCCEEECCCCCCCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11259647; 1938923 [H]