Click here to switch to the map view.

The map label for this gene is yqxC [H]

Identifier: 87200682

GI number: 87200682

Start: 2906949

End: 2907704

Strand: Reverse

Name: yqxC [H]

Synonym: Saro_2669

Alternate gene names: 87200682

Gene position: 2907704-2906949 (Counterclockwise)

Preceding gene: 87200685

Following gene: 87200681

Centisome position: 81.64

GC content: 67.46

Gene sequence:

>756_bases
GTGACCTCAACCCGCTCCCCCTCCAAGAAGATCCGCGTCGACCAGCTTCTGGTTGAGCGCGGGCTTGTCGAAAGCCGCGC
GCGCGCCCAGGCCCTGATCCTCGCGGGCCTCGTGTTTTCGGGGGAAACGAAGATCGCGAAGGCGGGGCAGCCGATCCCGG
CCGACGCGGCACTCGACGTGCGCGGGCGCGATCACCCGTGGGTTTCGCGCGGCGGGATCAAGCTGGCCCACGCGATCGAG
CATTTCGGACTCGATCCTGCGGGCGTCACGGCAATGGACATCGGCAGTTCCACCGGCGGGTTCACAGACGTCCTGCTCCA
GAATGGCGCCGAGCACGTGTTCGCGGTGGATTCGGGGACGAACCAGCTTGCCTGGAAGCTGCGGCAGGACCCGCGCGTGA
CCGTGCTGGAACAGACCAGTGCGCGCATCCTGACGCCTGCCCACATCGATCGCCCCGCAACCTGGGTGGTCTGCGATGCC
AGCTTCATTTCCCTGCGGAAAGTGCTGGAAGTGCCCCTCGCGCTGGCGACGCGGCCGACGCGGCTGGTGGCCCTGATCAA
GCCGCAGTTCGAAGTGGGCAAGGCCGAAGTCGGCAAGGGCGGGGTCGTACGCGACCCACAGCTCCACCAGCGGGTCTGCG
ACGAAGTGCGCGCCTGGCTGGAAGGGGACGGGTGGGAGGTCCAGGGCATTGTCCAGAGCCCGATCACCGGCCCGGAAGGC
AACGTCGAGTTCCTGATATCGGCATGTCGCGACTGA

Upstream 100 bases:

>100_bases
CGCGCATGCGGACACCAGCAGGAGCGCCGCGCAGGAAAAAGCAGGTAGGAACGGTGCTGCGCGATTGATCTTCATGCCAA
GGTTATGGAAGGAACGCGCC

Downstream 100 bases:

>100_bases
CATTTGCCGGATCCTGTCCCCCGGTGGGATTGCGGATAGTTTCAGTTCGCATTGCGCAGTTACCTGCAGAGCGCCAATAT
CGCAGGCGAATCGCGCTTCG

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MTSTRSPSKKIRVDQLLVERGLVESRARAQALILAGLVFSGETKIAKAGQPIPADAALDVRGRDHPWVSRGGIKLAHAIE
HFGLDPAGVTAMDIGSSTGGFTDVLLQNGAEHVFAVDSGTNQLAWKLRQDPRVTVLEQTSARILTPAHIDRPATWVVCDA
SFISLRKVLEVPLALATRPTRLVALIKPQFEVGKAEVGKGGVVRDPQLHQRVCDEVRAWLEGDGWEVQGIVQSPITGPEG
NVEFLISACRD

Sequences:

>Translated_251_residues
MTSTRSPSKKIRVDQLLVERGLVESRARAQALILAGLVFSGETKIAKAGQPIPADAALDVRGRDHPWVSRGGIKLAHAIE
HFGLDPAGVTAMDIGSSTGGFTDVLLQNGAEHVFAVDSGTNQLAWKLRQDPRVTVLEQTSARILTPAHIDRPATWVVCDA
SFISLRKVLEVPLALATRPTRLVALIKPQFEVGKAEVGKGGVVRDPQLHQRVCDEVRAWLEGDGWEVQGIVQSPITGPEG
NVEFLISACRD
>Mature_250_residues
TSTRSPSKKIRVDQLLVERGLVESRARAQALILAGLVFSGETKIAKAGQPIPADAALDVRGRDHPWVSRGGIKLAHAIEH
FGLDPAGVTAMDIGSSTGGFTDVLLQNGAEHVFAVDSGTNQLAWKLRQDPRVTVLEQTSARILTPAHIDRPATWVVCDAS
FISLRKVLEVPLALATRPTRLVALIKPQFEVGKAEVGKGGVVRDPQLHQRVCDEVRAWLEGDGWEVQGIVQSPITGPEGN
VEFLISACRD

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 27069; Mature: 26938

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSTRSPSKKIRVDQLLVERGLVESRARAQALILAGLVFSGETKIAKAGQPIPADAALDV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEC
RGRDHPWVSRGGIKLAHAIEHFGLDPAGVTAMDIGSSTGGFTDVLLQNGAEHVFAVDSGT
CCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEECCC
NQLAWKLRQDPRVTVLEQTSARILTPAHIDRPATWVVCDASFISLRKVLEVPLALATRPT
CCEEEEECCCCCEEEEECCCCEEECHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCE
RLVALIKPQFEVGKAEVGKGGVVRDPQLHQRVCDEVRAWLEGDGWEVQGIVQSPITGPEG
EEEEEECCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC
NVEFLISACRD
CHHHHHEECCC
>Mature Secondary Structure 
TSTRSPSKKIRVDQLLVERGLVESRARAQALILAGLVFSGETKIAKAGQPIPADAALDV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEC
RGRDHPWVSRGGIKLAHAIEHFGLDPAGVTAMDIGSSTGGFTDVLLQNGAEHVFAVDSGT
CCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEECCC
NQLAWKLRQDPRVTVLEQTSARILTPAHIDRPATWVVCDASFISLRKVLEVPLALATRPT
CCEEEEECCCCCEEEEECCCCEEECHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCE
RLVALIKPQFEVGKAEVGKGGVVRDPQLHQRVCDEVRAWLEGDGWEVQGIVQSPITGPEG
EEEEEECCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC
NVEFLISACRD
CHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]