Definition Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome.
Accession NC_007794
Length 3,561,584

Click here to switch to the map view.

The map label for this gene is 87200653

Identifier: 87200653

GI number: 87200653

Start: 2875964

End: 2877673

Strand: Reverse

Name: 87200653

Synonym: Saro_2640

Alternate gene names: NA

Gene position: 2877673-2875964 (Counterclockwise)

Preceding gene: 87200654

Following gene: 87200649

Centisome position: 80.8

GC content: 61.99

Gene sequence:

>1710_bases
ATGTCCGACATGGGAAAGCAGCAGTTCAACGCGGACATGGCTGTCGACAATGATCGCCAGATCACTCTGCCGCCCTTGGC
TGCTTCCCAGACCGCCGCAAGTGTCGACAATGCGCATCGGCCGATCGGCTTCGTGCGCGAGATCGCAGGCTCCAGTTCGG
CCATCGCGCTCGACCTGACAAGGCTCGAGGAATGCTCTGCTGATGTCGATCCCTCGGTTGCCATGTCGGGCAAGGTGGGC
AGCCAGATCAAGATCCGGGTCGGCAACTCCTGGCTGCTTGCCAGTGTCAGGACGCAGCGCCAGGACGTTGCCGTCGAAGG
CGGCGTGGTTGCACAGATCGACTTCCTTGGCGAAGGCGAGGAGGAACGCCTTACCGGCCGGATCTATGGCTTCCGGCGCG
GCATTACGCGCTATCCGGTGCCCGGTGCCCTCGTCTATCCCGCGACGAGCCACGACCTGCGCCAGATTTATGCCAGCGAC
GGGCGTACCAACATCTCCATCGGTACCGTTTTCCCGACGCGGGATATCCGCGCAGGGCTCTACGTCGATGCCCTGCTGGG
CAAGCACTTTGCGCTCCTGGGATCGACCGGCACCGGCAAGTCCACCGCGGCGGCGCTCATCCTTCACAGGATCTGCGAGA
TGGCACCGGCCGGCCATATCGTGATGATCGATCCGCACGGCGAATATTCGAGCGCGTTTCGCCAGACCGGGCAATTGCTG
GACGTCTCCAATCTGCAGATGCCCTACTGGCTGATGAACTTCGAGGAGCACTGCGAGGTTTTCGTCACGTCGACCGGCGC
GGACCGGCAGATCGATCTCGACATTCTTGCCAAGTGCCTGCTCGCGGCAAGGCAGCGCAACCGGCTGGCGGAGCAGATCG
GCAAGATTACAGTCGATTCGCCGATCCCGTATCTTCTTTCGGACCTGCTCAACATCCTCCAGAACGAGATGGGCAAGCTC
GACAAGGGGACCAACTCGATCCCCTACATGCGCCTGAAGACCAAGATCGAGGAGATCCGCAGCGATCCGCGATACCAGTT
CATGTTCTCGGGCATGCTCGTGGGCGACACGATGGTCGAGTTCATCTCAAAGATTTTCCGAATGCCCGCCAATGGCAAGC
CGATCTCGATCATCGACGTGTCGGGCGTCCCATCGGAAATCACGTCTACCGTGGTCGCGGTGCTGAGCCGGTTGGTCTTC
GACTATGCCATCTGGGCGCGCGACGAGGAGACCCGGCCTGTGCTGCTGGTCTGCGAAGAGGCGCACCGTTACGTTCCCAA
CGAGAGGAACACGCGCGGCTCTTCGGTCGGCGACATCCTTTCCCGGATTGCCAAGGAAGGCCGAAAGTACGGTGTGTCCC
TGGGCCTGATCACGCAGCGACCGTCCGACCTTGCCGAAGGCGTCCTGTCGCAGTGCGGCACCATTATCGCGATGCGTCTG
AACAACGAGCGGGACCAGGCCTTCGTCAAGGCCGCCATGCCCGAGGGTGCCCGTGGGTTCGTCGACACGATCCCGGCGCT
GCGCAACCGTGAATGCATCATCTCCGGTGAAGGCGTGTCCATACCCATGCGCGTCTCGTTCGACGAACTGGAGGCGATGA
AGCGCCCGGCGTCGAACGATCCTTCGTTCTATGAATTGTGGAGCAAGGCCGATGCCGACGACCGTGCGGTTGAACGTACG
GTCCAGCGCTGGCGGGCACAAAGCCGCTGA

Upstream 100 bases:

>100_bases
AGCCCGGACCATTCCGCTGGTGACGGAAAGTTTAGCCCATTTTAACCTGAAACCCCTAACTCTCGACGCCAATTCGAATG
ACCGAGGGGTTTGCGGTTTT

Downstream 100 bases:

>100_bases
TGTGCATCGCCTATGGCGCGCCAACGATGGCGCGCCATAGGCGGTCGGTCAGAGTGCCGGCGCCATGCGACCTGCCGGGT
CGGCGTCGGCGTGGGTTTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 569; Mature: 568

Protein sequence:

>569_residues
MSDMGKQQFNADMAVDNDRQITLPPLAASQTAASVDNAHRPIGFVREIAGSSSAIALDLTRLEECSADVDPSVAMSGKVG
SQIKIRVGNSWLLASVRTQRQDVAVEGGVVAQIDFLGEGEEERLTGRIYGFRRGITRYPVPGALVYPATSHDLRQIYASD
GRTNISIGTVFPTRDIRAGLYVDALLGKHFALLGSTGTGKSTAAALILHRICEMAPAGHIVMIDPHGEYSSAFRQTGQLL
DVSNLQMPYWLMNFEEHCEVFVTSTGADRQIDLDILAKCLLAARQRNRLAEQIGKITVDSPIPYLLSDLLNILQNEMGKL
DKGTNSIPYMRLKTKIEEIRSDPRYQFMFSGMLVGDTMVEFISKIFRMPANGKPISIIDVSGVPSEITSTVVAVLSRLVF
DYAIWARDEETRPVLLVCEEAHRYVPNERNTRGSSVGDILSRIAKEGRKYGVSLGLITQRPSDLAEGVLSQCGTIIAMRL
NNERDQAFVKAAMPEGARGFVDTIPALRNRECIISGEGVSIPMRVSFDELEAMKRPASNDPSFYELWSKADADDRAVERT
VQRWRAQSR

Sequences:

>Translated_569_residues
MSDMGKQQFNADMAVDNDRQITLPPLAASQTAASVDNAHRPIGFVREIAGSSSAIALDLTRLEECSADVDPSVAMSGKVG
SQIKIRVGNSWLLASVRTQRQDVAVEGGVVAQIDFLGEGEEERLTGRIYGFRRGITRYPVPGALVYPATSHDLRQIYASD
GRTNISIGTVFPTRDIRAGLYVDALLGKHFALLGSTGTGKSTAAALILHRICEMAPAGHIVMIDPHGEYSSAFRQTGQLL
DVSNLQMPYWLMNFEEHCEVFVTSTGADRQIDLDILAKCLLAARQRNRLAEQIGKITVDSPIPYLLSDLLNILQNEMGKL
DKGTNSIPYMRLKTKIEEIRSDPRYQFMFSGMLVGDTMVEFISKIFRMPANGKPISIIDVSGVPSEITSTVVAVLSRLVF
DYAIWARDEETRPVLLVCEEAHRYVPNERNTRGSSVGDILSRIAKEGRKYGVSLGLITQRPSDLAEGVLSQCGTIIAMRL
NNERDQAFVKAAMPEGARGFVDTIPALRNRECIISGEGVSIPMRVSFDELEAMKRPASNDPSFYELWSKADADDRAVERT
VQRWRAQSR
>Mature_568_residues
SDMGKQQFNADMAVDNDRQITLPPLAASQTAASVDNAHRPIGFVREIAGSSSAIALDLTRLEECSADVDPSVAMSGKVGS
QIKIRVGNSWLLASVRTQRQDVAVEGGVVAQIDFLGEGEEERLTGRIYGFRRGITRYPVPGALVYPATSHDLRQIYASDG
RTNISIGTVFPTRDIRAGLYVDALLGKHFALLGSTGTGKSTAAALILHRICEMAPAGHIVMIDPHGEYSSAFRQTGQLLD
VSNLQMPYWLMNFEEHCEVFVTSTGADRQIDLDILAKCLLAARQRNRLAEQIGKITVDSPIPYLLSDLLNILQNEMGKLD
KGTNSIPYMRLKTKIEEIRSDPRYQFMFSGMLVGDTMVEFISKIFRMPANGKPISIIDVSGVPSEITSTVVAVLSRLVFD
YAIWARDEETRPVLLVCEEAHRYVPNERNTRGSSVGDILSRIAKEGRKYGVSLGLITQRPSDLAEGVLSQCGTIIAMRLN
NERDQAFVKAAMPEGARGFVDTIPALRNRECIISGEGVSIPMRVSFDELEAMKRPASNDPSFYELWSKADADDRAVERTV
QRWRAQSR

Specific function: Unknown

COG id: COG0433

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJECL08 and MJ1429 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008571
- InterPro:   IPR002789
- InterPro:   IPR018538 [H]

Pfam domain/function: PF05872 DUF853; PF01935 DUF87; PF09378 HAS-barrel [H]

EC number: NA

Molecular weight: Translated: 62719; Mature: 62588

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDMGKQQFNADMAVDNDRQITLPPLAASQTAASVDNAHRPIGFVREIAGSSSAIALDLT
CCCCCCHHCCCCCEECCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHCCCCCEEEEEHH
RLEECSADVDPSVAMSGKVGSQIKIRVGNSWLLASVRTQRQDVAVEGGVVAQIDFLGEGE
HHHHCCCCCCCCEEECCCCCCEEEEEECCCEEEEEHHHHHHCEEECCCEEEEEEECCCCC
EERLTGRIYGFRRGITRYPVPGALVYPATSHDLRQIYASDGRTNISIGTVFPTRDIRAGL
HHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCHH
YVDALLGKHFALLGSTGTGKSTAAALILHRICEMAPAGHIVMIDPHGEYSSAFRQTGQLL
HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHCCCEE
DVSNLQMPYWLMNFEEHCEVFVTSTGADRQIDLDILAKCLLAARQRNRLAEQIGKITVDS
ECCCCCCCHHHCCHHCCCEEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHCCEEECC
PIPYLLSDLLNILQNEMGKLDKGTNSIPYMRLKTKIEEIRSDPRYQFMFSGMLVGDTMVE
CCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
FISKIFRMPANGKPISIIDVSGVPSEITSTVVAVLSRLVFDYAIWARDEETRPVLLVCEE
HHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEH
AHRYVPNERNTRGSSVGDILSRIAKEGRKYGVSLGLITQRPSDLAEGVLSQCGTIIAMRL
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCEEEEEEE
NNERDQAFVKAAMPEGARGFVDTIPALRNRECIISGEGVSIPMRVSFDELEAMKRPASND
CCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEECCCCEEEEEECHHHHHHHHCCCCCC
PSFYELWSKADADDRAVERTVQRWRAQSR
CHHHHHHHCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SDMGKQQFNADMAVDNDRQITLPPLAASQTAASVDNAHRPIGFVREIAGSSSAIALDLT
CCCCCHHCCCCCEECCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHCCCCCEEEEEHH
RLEECSADVDPSVAMSGKVGSQIKIRVGNSWLLASVRTQRQDVAVEGGVVAQIDFLGEGE
HHHHCCCCCCCCEEECCCCCCEEEEEECCCEEEEEHHHHHHCEEECCCEEEEEEECCCCC
EERLTGRIYGFRRGITRYPVPGALVYPATSHDLRQIYASDGRTNISIGTVFPTRDIRAGL
HHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCHH
YVDALLGKHFALLGSTGTGKSTAAALILHRICEMAPAGHIVMIDPHGEYSSAFRQTGQLL
HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHCCCEE
DVSNLQMPYWLMNFEEHCEVFVTSTGADRQIDLDILAKCLLAARQRNRLAEQIGKITVDS
ECCCCCCCHHHCCHHCCCEEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHCCEEECC
PIPYLLSDLLNILQNEMGKLDKGTNSIPYMRLKTKIEEIRSDPRYQFMFSGMLVGDTMVE
CCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
FISKIFRMPANGKPISIIDVSGVPSEITSTVVAVLSRLVFDYAIWARDEETRPVLLVCEE
HHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEH
AHRYVPNERNTRGSSVGDILSRIAKEGRKYGVSLGLITQRPSDLAEGVLSQCGTIIAMRL
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCEEEEEEE
NNERDQAFVKAAMPEGARGFVDTIPALRNRECIISGEGVSIPMRVSFDELEAMKRPASND
CCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEECCCCEEEEEECHHHHHHHHCCCCCC
PSFYELWSKADADDRAVERTVQRWRAQSR
CHHHHHHHCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]