Click here to switch to the map view.

The map label for this gene is 87200649

Identifier: 87200649

GI number: 87200649

Start: 2872738

End: 2873232

Strand: Reverse

Name: 87200649

Synonym: Saro_2636

Alternate gene names: NA

Gene position: 2873232-2872738 (Counterclockwise)

Preceding gene: 87200653

Following gene: 87200648

Centisome position: 80.67

GC content: 65.66

Gene sequence:

>495_bases
ATGCGGAACAGTCGGCTGATGGTGCAGGGTGCGGCGGTGCTCGCCCTGGGCGTGCTGGCGGCGGGTTGTTCGAGCATCAA
GGACCACCGCGGCTATATCATCGACGAAGCGCTTGTCGCCTCTGTCCAGCCGGGCGTCGACAACAAGCTCTCGGTCGAGC
GTACGCTTGGCCGCCCCACGTTCACCAGCCAGTTCGGAAAGCAGACCTGGTACTACGTGGCGATGAACACCAAGCAGAAG
CCGTTCAACCGTCCGAAGACCGACAACCAGTCGATCCTCGTGGTGGACTTCGACGCGCGGGGCAACGTTTCCTCGCTCAC
GCGGGAAGGCATGACCAAGGTGGTTCGCCTCTCGCCCGAAAGCGACAAGACGCCCACGCTTGGCCGTGACCGCTCGTTCT
TCGAGGACCTGTTCGGCAACATCGGCGCAGTGGGCGCGATCCCGGGCGGCGGTGCCGGCGGGGCGACTGGCGGTTCGGGG
CCGAACGGGAGCTGA

Upstream 100 bases:

>100_bases
TGCGGTATTGCCGATTGGACCCTAAGGGTCCGCCGATATAGGCTGTCCATTCCCGATGCAAACGGGCATGAGTGCGGCAG
GATGTAAGCGGAGTTATCGA

Downstream 100 bases:

>100_bases
TCCGCGCCGCTTGAAATCCGTGTCCCGCGCCACATATCGCGCAGCATGGACGACAGCAGGGCGAGCCACGGCCTTATCCA
GTGGCACGGCACCACCATCA

Product: SmpA/OmlA

Products: NA

Alternate protein names: SmpA/OmlA; SmpA/OmlA Domain-Containing Protein; Small Protein A

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MRNSRLMVQGAAVLALGVLAAGCSSIKDHRGYIIDEALVASVQPGVDNKLSVERTLGRPTFTSQFGKQTWYYVAMNTKQK
PFNRPKTDNQSILVVDFDARGNVSSLTREGMTKVVRLSPESDKTPTLGRDRSFFEDLFGNIGAVGAIPGGGAGGATGGSG
PNGS

Sequences:

>Translated_164_residues
MRNSRLMVQGAAVLALGVLAAGCSSIKDHRGYIIDEALVASVQPGVDNKLSVERTLGRPTFTSQFGKQTWYYVAMNTKQK
PFNRPKTDNQSILVVDFDARGNVSSLTREGMTKVVRLSPESDKTPTLGRDRSFFEDLFGNIGAVGAIPGGGAGGATGGSG
PNGS
>Mature_164_residues
MRNSRLMVQGAAVLALGVLAAGCSSIKDHRGYIIDEALVASVQPGVDNKLSVERTLGRPTFTSQFGKQTWYYVAMNTKQK
PFNRPKTDNQSILVVDFDARGNVSSLTREGMTKVVRLSPESDKTPTLGRDRSFFEDLFGNIGAVGAIPGGGAGGATGGSG
PNGS

Specific function: Unknown

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17308; Mature: 17308

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNSRLMVQGAAVLALGVLAAGCSSIKDHRGYIIDEALVASVQPGVDNKLSVERTLGRPT
CCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHCCCCCCCCEEHHHHCCCCC
FTSQFGKQTWYYVAMNTKQKPFNRPKTDNQSILVVDFDARGNVSSLTREGMTKVVRLSPE
HHHHHCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHEEEEECCC
SDKTPTLGRDRSFFEDLFGNIGAVGAIPGGGAGGATGGSGPNGS
CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRNSRLMVQGAAVLALGVLAAGCSSIKDHRGYIIDEALVASVQPGVDNKLSVERTLGRPT
CCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHCCCCCCCCEEHHHHCCCCC
FTSQFGKQTWYYVAMNTKQKPFNRPKTDNQSILVVDFDARGNVSSLTREGMTKVVRLSPE
HHHHHCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHEEEEECCC
SDKTPTLGRDRSFFEDLFGNIGAVGAIPGGGAGGATGGSGPNGS
CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA