| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200637
Identifier: 87200637
GI number: 87200637
Start: 2839239
End: 2840651
Strand: Reverse
Name: 87200637
Synonym: Saro_2624
Alternate gene names: NA
Gene position: 2840651-2839239 (Counterclockwise)
Preceding gene: 87200640
Following gene: 87200636
Centisome position: 79.76
GC content: 66.53
Gene sequence:
>1413_bases ATGCTCGAAACACGCTGGCGCCGCTGTGCGTTCATGCTTGCCGCATCCGCGCTGACCGTGCCTGCCGTGGCTCACGCCGC CGGTTCGACCAGTCGTGAGGCCGAACTCGAAGCGCGCCTGCTGAGGCTGGAGAGCGAGATGGAGGCCATGAAGGCCGACC TCGCCCAGGCCCGCGCCGACAAGGCCGATGCCGGCATCCACGCTGCGGAGGTGGCCGAGGCCGCGTCGGAGAAGGCCGAC GCCGCCACCGCCAAGGTGGCCGCGCTCGAGGCCAAGCCCCAGCCCGAAGGCTTCCGGGTCGGCAGTACGACCGTGAAACT GGGTGGATGGATCAAGCTCGTCGCCACCAGCAGCCGTTTCAGCGACGGCGAGGTCGCCAACAATGCGTTCGGGCGCGATT TCTGGCTGCCGCAGCAGATTCCGGTGGGCGGCGGACATGCCGTGCGCGAGCAGGATTTCAGCGCTCGCCAGTCGCGCTTC TGGCTGAATCTCGATACCACGGTCGCCGGGCACAGCCTCAAGGGCTACGTCGAAACCGATTTCGAGACGGCGCCGGGCAC GCAAGGCACGCAGCGCACCACCAACGGCTACAACCTCGCGCTGCGCCGTGCCTATATCCAGGTCGACAAGTGGACCTTCG GCCAGGACTGGTCGACCTTCCAGTACACCGGGGCCCTGCCCGAAAGCACCGACTACGTTGGCACCACCGAGGGCACCGTC TTCGTGCGCCAGCCCGTGATCCGCTACTCGACCAAGGTGGGGGACACGATGACGCTGCACGTTTCGGTCGAGAACCCGGA AACCGCCACCGCAACCGCCGGCTCGGCCACGCTTGTCGAGAACGGCGACGATCGCATCCCAGACTTCGCCGCGCGTCTCG TCTGGAACGGCAAGGCCGGAGAGCTCTCGCTGGCGGGGCTGGCGCGTGAACTGCGCATAGAAAACAATGGCGTTGCCGAC AGCCGCTTTGGCTGGGGCGTCAGTGCGGCGGGCAAGCTGTTCCTGGATGACGACAAGGTCAGCGACCTGCGCTTCATGGC GACATACGGGCAGGGCGCCAGCCGCTACATTGGCGCGAACTTCGCTCCGGATGCGGTTTTCGTCGGTGCCACCGGCAAAC TCGAGAACGTCACCGTCGCCTCGGCCATGGTCGCGGGCCGCTTCGGCATCGCGCCGGGCCTGCGCGCCAACCTGATGGGG AGCTGGCAACGGGTCCACTACGCCGATGCGCTGACCTCCGCGATGGTCGGCACATACAACAAGCAGGCGTGGAGCCTTGC CGGCAACCTGTTCTGGTCGCCGATAAAGAATGTCGACCTCGGGATCGAGGTCCGGCACGGTGAGCGCAAGCTCGTCAACG GTGCGAGCGGTTCGCTCGATCGCATCGAGTTCGCCGCGAAGTACGGTTTCTAA
Upstream 100 bases:
>100_bases TAGTCGTAGATATAAGACCATCCTCTCTCTGGTTGCCAAGCCCCGGCCGGGGAAAACTGCCGGCAGGATGTCGCGAAATA GCGATGCCGGGAGAGGGAAA
Downstream 100 bases:
>100_bases GAGCCCACAATAATAGGGGAAGAGGATGTCCAACCTTGAGATAGCGGATGATTTTTCGGCTTTGCCGAAACATCATCAGG CCACGCACAACGAGAAGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 470; Mature: 470
Protein sequence:
>470_residues MLETRWRRCAFMLAASALTVPAVAHAAGSTSREAELEARLLRLESEMEAMKADLAQARADKADAGIHAAEVAEAASEKAD AATAKVAALEAKPQPEGFRVGSTTVKLGGWIKLVATSSRFSDGEVANNAFGRDFWLPQQIPVGGGHAVREQDFSARQSRF WLNLDTTVAGHSLKGYVETDFETAPGTQGTQRTTNGYNLALRRAYIQVDKWTFGQDWSTFQYTGALPESTDYVGTTEGTV FVRQPVIRYSTKVGDTMTLHVSVENPETATATAGSATLVENGDDRIPDFAARLVWNGKAGELSLAGLARELRIENNGVAD SRFGWGVSAAGKLFLDDDKVSDLRFMATYGQGASRYIGANFAPDAVFVGATGKLENVTVASAMVAGRFGIAPGLRANLMG SWQRVHYADALTSAMVGTYNKQAWSLAGNLFWSPIKNVDLGIEVRHGERKLVNGASGSLDRIEFAAKYGF
Sequences:
>Translated_470_residues MLETRWRRCAFMLAASALTVPAVAHAAGSTSREAELEARLLRLESEMEAMKADLAQARADKADAGIHAAEVAEAASEKAD AATAKVAALEAKPQPEGFRVGSTTVKLGGWIKLVATSSRFSDGEVANNAFGRDFWLPQQIPVGGGHAVREQDFSARQSRF WLNLDTTVAGHSLKGYVETDFETAPGTQGTQRTTNGYNLALRRAYIQVDKWTFGQDWSTFQYTGALPESTDYVGTTEGTV FVRQPVIRYSTKVGDTMTLHVSVENPETATATAGSATLVENGDDRIPDFAARLVWNGKAGELSLAGLARELRIENNGVAD SRFGWGVSAAGKLFLDDDKVSDLRFMATYGQGASRYIGANFAPDAVFVGATGKLENVTVASAMVAGRFGIAPGLRANLMG SWQRVHYADALTSAMVGTYNKQAWSLAGNLFWSPIKNVDLGIEVRHGERKLVNGASGSLDRIEFAAKYGF >Mature_470_residues MLETRWRRCAFMLAASALTVPAVAHAAGSTSREAELEARLLRLESEMEAMKADLAQARADKADAGIHAAEVAEAASEKAD AATAKVAALEAKPQPEGFRVGSTTVKLGGWIKLVATSSRFSDGEVANNAFGRDFWLPQQIPVGGGHAVREQDFSARQSRF WLNLDTTVAGHSLKGYVETDFETAPGTQGTQRTTNGYNLALRRAYIQVDKWTFGQDWSTFQYTGALPESTDYVGTTEGTV FVRQPVIRYSTKVGDTMTLHVSVENPETATATAGSATLVENGDDRIPDFAARLVWNGKAGELSLAGLARELRIENNGVAD SRFGWGVSAAGKLFLDDDKVSDLRFMATYGQGASRYIGANFAPDAVFVGATGKLENVTVASAMVAGRFGIAPGLRANLMG SWQRVHYADALTSAMVGTYNKQAWSLAGNLFWSPIKNVDLGIEVRHGERKLVNGASGSLDRIEFAAKYGF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50539; Mature: 50539
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLETRWRRCAFMLAASALTVPAVAHAAGSTSREAELEARLLRLESEMEAMKADLAQARAD CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC KADAGIHAAEVAEAASEKADAATAKVAALEAKPQPEGFRVGSTTVKLGGWIKLVATSSRF CCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCEEECCEEEEECCEEEEEEECCCC SDGEVANNAFGRDFWLPQQIPVGGGHAVREQDFSARQSRFWLNLDTTVAGHSLKGYVETD CCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEEEECCEECCCCEECEEEEC FETAPGTQGTQRTTNGYNLALRRAYIQVDKWTFGQDWSTFQYTGALPESTDYVGTTEGTV CCCCCCCCCCCCCCCCCEEEEEEEEEEEECEECCCCCCCEEEECCCCCCCCCCCCCCCEE FVRQPVIRYSTKVGDTMTLHVSVENPETATATAGSATLVENGDDRIPDFAARLVWNGKAG EEECCHHHHHCCCCCEEEEEEEECCCCCCEECCCCEEEEECCCCCCCHHHHHEEECCCCC ELSLAGLARELRIENNGVADSRFGWGVSAAGKLFLDDDKVSDLRFMATYGQGASRYIGAN CEEHHHHHHHEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCCCEEECCC FAPDAVFVGATGKLENVTVASAMVAGRFGIAPGLRANLMGSWQRVHYADALTSAMVGTYN CCCCEEEEECCCCCCCEEHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCC KQAWSLAGNLFWSPIKNVDLGIEVRHGERKLVNGASGSLDRIEFAAKYGF CHHHHHHCCCEECCCCCCCEEEEEECCCEEEECCCCCCHHHHHEEECCCC >Mature Secondary Structure MLETRWRRCAFMLAASALTVPAVAHAAGSTSREAELEARLLRLESEMEAMKADLAQARAD CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC KADAGIHAAEVAEAASEKADAATAKVAALEAKPQPEGFRVGSTTVKLGGWIKLVATSSRF CCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCEEECCEEEEECCEEEEEEECCCC SDGEVANNAFGRDFWLPQQIPVGGGHAVREQDFSARQSRFWLNLDTTVAGHSLKGYVETD CCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEEEECCEECCCCEECEEEEC FETAPGTQGTQRTTNGYNLALRRAYIQVDKWTFGQDWSTFQYTGALPESTDYVGTTEGTV CCCCCCCCCCCCCCCCCEEEEEEEEEEEECEECCCCCCCEEEECCCCCCCCCCCCCCCEE FVRQPVIRYSTKVGDTMTLHVSVENPETATATAGSATLVENGDDRIPDFAARLVWNGKAG EEECCHHHHHCCCCCEEEEEEEECCCCCCEECCCCEEEEECCCCCCCHHHHHEEECCCCC ELSLAGLARELRIENNGVADSRFGWGVSAAGKLFLDDDKVSDLRFMATYGQGASRYIGAN CEEHHHHHHHEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCCCEEECCC FAPDAVFVGATGKLENVTVASAMVAGRFGIAPGLRANLMGSWQRVHYADALTSAMVGTYN CCCCEEEEECCCCCCCEEHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCC KQAWSLAGNLFWSPIKNVDLGIEVRHGERKLVNGASGSLDRIEFAAKYGF CHHHHHHCCCEECCCCCCCEEEEEECCCEEEECCCCCCHHHHHEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA