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The map label for this gene is virS [H]

Identifier: 87200613

GI number: 87200613

Start: 2808811

End: 2809866

Strand: Direct

Name: virS [H]

Synonym: Saro_2600

Alternate gene names: 87200613

Gene position: 2808811-2809866 (Clockwise)

Preceding gene: 87200612

Following gene: 87200618

Centisome position: 78.86

GC content: 66.38

Gene sequence:

>1056_bases
ATGACCGCGCCCACTATCTCCGCGCCGTTCCTGCGCCACGTGGCCAATTGCGTCGAGCTTACGGGCCGTAGCGCCGCGCC
GCTGCTGGAGGAACTGGGCATCGCGCAGGAACGGCTCGACGATCCCGAAGGCCTCATTCCCCTGGCCGCCTTTCTCGCCT
TTTTCGAGAGCGCGGCCACCCTCGTGCGCAACCCCCACTTCGGGCTTCATGCCGGGCGGCTGGCCGGTTCGGACAGCCTC
GGGCCGTTGAGCTTCCTGTTCCTGAGCGCGCCCGACCTGGGTGCGGCCTTCACCAGCTTCACACGCTATCTCGCGCTGAT
GCAGCAGGCTTCGCGCAACACCTTCACCATCGGCGATCGTTGGGCCACGTTCGAATACATGGTGCAGGATCAGCGCCTTA
CCGCCCGGCGGCAGGACGCCGAATACTCGATCGGCGCAATGTTCAGCCTTGCCCGGCAATTCACCGGCGGCACCATCGAA
TTTCGCGAAGTGCGGTTCGAGCACGAGCGCGTCGGCGACTATGCCCGCTACGCCGACTTCTTCGGCTGCGACGTCTTCTT
CGAACAGGAAACCAACGCCCTGTCCTTCGACCGGGGTTGCCTCGAAATTCGCGGCAAGGTGCTCAGTCCGTCGCTGCATC
CGATCATCGAGGACCACTTGCGCCGCCGCGAATCTCCGGCGGCAGCGGCGATGGCGAGCTTTGCGGATCGCGTGCGCACC
ATCGTTGCCGCCACGCCACTCGACCGGCACCTGCCGGCAAGCGACGCGGCAAGGCGGCTGGGATGCTCGTTGCAGACATT
CCACCGGCGGTTGGCGCAGGAAGGCGCGAACTGGCGGACGCTTGTCGCGGAACACCGCATGGAAGCAGCCGCGCGCCTGC
TACGCGACAGCCGACGCGAGATCAGCGCGATTGCCCTGGCGCTCGGCTATTCGGAAAGCGCCGCTTTTGTCCGCAGTTTC
AGCCGCCATTTCGGCCAATCGCCGGGACGCTACCGCCGGCACCTGCAAAATGGCGCCGCCCTCCCGGTGGGAGAGGACGG
CGCCAGTTCAGGGTGA

Upstream 100 bases:

>100_bases
TCCTCGAGGTGAAGTCCATCTACGGCGGCGCCTGAGCCCAGGTAATGGCCGCGACGGGCGTCTTGCCAGCGCGGCCGAAC
GGCCTAGTCTGGCCGCCGAG

Downstream 100 bases:

>100_bases
ACGGTATGGCTGAGGCCCGACAGCCTACCACTTGACCGTGGCGCTGACGCCATAGGTGGCGGGCTTGGCGTAGACCGAGG
TCGTGCCGAGCGGTCCGAGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 350

Protein sequence:

>351_residues
MTAPTISAPFLRHVANCVELTGRSAAPLLEELGIAQERLDDPEGLIPLAAFLAFFESAATLVRNPHFGLHAGRLAGSDSL
GPLSFLFLSAPDLGAAFTSFTRYLALMQQASRNTFTIGDRWATFEYMVQDQRLTARRQDAEYSIGAMFSLARQFTGGTIE
FREVRFEHERVGDYARYADFFGCDVFFEQETNALSFDRGCLEIRGKVLSPSLHPIIEDHLRRRESPAAAAMASFADRVRT
IVAATPLDRHLPASDAARRLGCSLQTFHRRLAQEGANWRTLVAEHRMEAAARLLRDSRREISAIALALGYSESAAFVRSF
SRHFGQSPGRYRRHLQNGAALPVGEDGASSG

Sequences:

>Translated_351_residues
MTAPTISAPFLRHVANCVELTGRSAAPLLEELGIAQERLDDPEGLIPLAAFLAFFESAATLVRNPHFGLHAGRLAGSDSL
GPLSFLFLSAPDLGAAFTSFTRYLALMQQASRNTFTIGDRWATFEYMVQDQRLTARRQDAEYSIGAMFSLARQFTGGTIE
FREVRFEHERVGDYARYADFFGCDVFFEQETNALSFDRGCLEIRGKVLSPSLHPIIEDHLRRRESPAAAAMASFADRVRT
IVAATPLDRHLPASDAARRLGCSLQTFHRRLAQEGANWRTLVAEHRMEAAARLLRDSRREISAIALALGYSESAAFVRSF
SRHFGQSPGRYRRHLQNGAALPVGEDGASSG
>Mature_350_residues
TAPTISAPFLRHVANCVELTGRSAAPLLEELGIAQERLDDPEGLIPLAAFLAFFESAATLVRNPHFGLHAGRLAGSDSLG
PLSFLFLSAPDLGAAFTSFTRYLALMQQASRNTFTIGDRWATFEYMVQDQRLTARRQDAEYSIGAMFSLARQFTGGTIEF
REVRFEHERVGDYARYADFFGCDVFFEQETNALSFDRGCLEIRGKVLSPSLHPIIEDHLRRRESPAAAAMASFADRVRTI
VAATPLDRHLPASDAARRLGCSLQTFHRRLAQEGANWRTLVAEHRMEAAARLLRDSRREISAIALALGYSESAAFVRSFS
RHFGQSPGRYRRHLQNGAALPVGEDGASSG

Specific function: May have a role in the regulation of proteins necessary for virulence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38813; Mature: 38682

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPTISAPFLRHVANCVELTGRSAAPLLEELGIAQERLDDPEGLIPLAAFLAFFESAAT
CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHH
LVRNPHFGLHAGRLAGSDSLGPLSFLFLSAPDLGAAFTSFTRYLALMQQASRNTFTIGDR
HHCCCCCCCCCCCCCCCCCCCHHHHHEECCCCHHHHHHHHHHHHHHHHHHCCCCEEECCC
WATFEYMVQDQRLTARRQDAEYSIGAMFSLARQFTGGTIEFREVRFEHERVGDYARYADF
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHH
FGCDVFFEQETNALSFDRGCLEIRGKVLSPSLHPIIEDHLRRRESPAAAAMASFADRVRT
HCCEEEEECCCCCCHHCCCHHHHCCHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
IVAATPLDRHLPASDAARRLGCSLQTFHRRLAQEGANWRTLVAEHRMEAAARLLRDSRRE
HHHCCCCHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
ISAIALALGYSESAAFVRSFSRHFGQSPGRYRRHLQNGAALPVGEDGASSG
HHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TAPTISAPFLRHVANCVELTGRSAAPLLEELGIAQERLDDPEGLIPLAAFLAFFESAAT
CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHH
LVRNPHFGLHAGRLAGSDSLGPLSFLFLSAPDLGAAFTSFTRYLALMQQASRNTFTIGDR
HHCCCCCCCCCCCCCCCCCCCHHHHHEECCCCHHHHHHHHHHHHHHHHHHCCCCEEECCC
WATFEYMVQDQRLTARRQDAEYSIGAMFSLARQFTGGTIEFREVRFEHERVGDYARYADF
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHH
FGCDVFFEQETNALSFDRGCLEIRGKVLSPSLHPIIEDHLRRRESPAAAAMASFADRVRT
HCCEEEEECCCCCCHHCCCHHHHCCHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
IVAATPLDRHLPASDAARRLGCSLQTFHRRLAQEGANWRTLVAEHRMEAAARLLRDSRRE
HHHCCCCHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
ISAIALALGYSESAAFVRSFSRHFGQSPGRYRRHLQNGAALPVGEDGASSG
HHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8472958; 9634230; 12218036 [H]