| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87200610
Identifier: 87200610
GI number: 87200610
Start: 2805478
End: 2806278
Strand: Reverse
Name: 87200610
Synonym: Saro_2597
Alternate gene names: NA
Gene position: 2806278-2805478 (Counterclockwise)
Preceding gene: 87200614
Following gene: 87200607
Centisome position: 78.79
GC content: 64.67
Gene sequence:
>801_bases ATGACCGATCTGAAGGGCCTGTTCTACCCGCGCACCCCCACCGGCAAGGCCAGCATCGTGCCGCCGGTGCCGTGGCACTA TTCGGGTGAACTCATCACGCTGGAATATCGCACGGACCCGGCCAAGGTCGCCGCGCTCCTGCCGGAAGGCTTCACTCTGG CCGACGAGGATCCCGGCGCCGTGGCGGCGATCTGGGCCGACTGGCAGTCAACCGGCGAGGATCCGGCGCAACTGCTCGAC CCCATCCGCGTGCAGTACAAGGAGATGTTCATCGTCGTCCGCTGCAAGTTCCAGGGCAAGACCTACTCGCGCTGCGTCTA CATCTGGGTCGACAAGGAGTTCGCGATGCTGCGCGGGCAGCACCAGGGCTATCCCAAGAAGCTGGGCTCGATCCACATGA GCCGTCCGGTCAATGTCGGCAAGGCCGGGCCGCGACTGGAGCCGGGCGGCACGTTCGGCGTGACCCTTGCGGCGTTCGAC AGAAGGCTCGCCGAAGGCCGCTTCACCATCACTGAGGCCTGCGAACGTCCCGGCTTCGTCAACGGCCATCCCATGGCGCA CAATCGCTGGATGCCCGCCATCGAGACCGACGGCAGCCAGAGCCTGAACGAAGTCGTCACGATGTCGAGCTACGACGTGG ACTTCGGCCGCTGCTTCCGCGGCGATTTCGATCTCGACTATTTCGACAGCCCGGTCGAGGAACTGCTGGACATCGCCCCG CAGGAAAAGATCGCGGGATACTGGCACGAAGTCGGCGTCTCATGGCGCGCAGGTACGACACTCTGGCGCGATAACCTCTG A
Upstream 100 bases:
>100_bases ATCATAGGGCGGGGAAGGCGCGCAGGCTTTGGCCGTTGCGGCCAAGCTTCGCCACTGCCGGTCGCTAGAACGGGGCGACT GCAAATTCGCCGAGGATTCC
Downstream 100 bases:
>100_bases GGCGACAACTTCTGATGCGGCAGGTCCCTGTCCCTCCCCCGCACCGGGAGGGCATGGCCGCTGATCAGATGTACTGGTTG ACCACCTGTCCGGCGGAACT
Product: acetoacetate decarboxylase
Products: NA
Alternate protein names: Carboxy-Lyase; Acetoacetate Decarboxylase-Like Protein
Number of amino acids: Translated: 266; Mature: 265
Protein sequence:
>266_residues MTDLKGLFYPRTPTGKASIVPPVPWHYSGELITLEYRTDPAKVAALLPEGFTLADEDPGAVAAIWADWQSTGEDPAQLLD PIRVQYKEMFIVVRCKFQGKTYSRCVYIWVDKEFAMLRGQHQGYPKKLGSIHMSRPVNVGKAGPRLEPGGTFGVTLAAFD RRLAEGRFTITEACERPGFVNGHPMAHNRWMPAIETDGSQSLNEVVTMSSYDVDFGRCFRGDFDLDYFDSPVEELLDIAP QEKIAGYWHEVGVSWRAGTTLWRDNL
Sequences:
>Translated_266_residues MTDLKGLFYPRTPTGKASIVPPVPWHYSGELITLEYRTDPAKVAALLPEGFTLADEDPGAVAAIWADWQSTGEDPAQLLD PIRVQYKEMFIVVRCKFQGKTYSRCVYIWVDKEFAMLRGQHQGYPKKLGSIHMSRPVNVGKAGPRLEPGGTFGVTLAAFD RRLAEGRFTITEACERPGFVNGHPMAHNRWMPAIETDGSQSLNEVVTMSSYDVDFGRCFRGDFDLDYFDSPVEELLDIAP QEKIAGYWHEVGVSWRAGTTLWRDNL >Mature_265_residues TDLKGLFYPRTPTGKASIVPPVPWHYSGELITLEYRTDPAKVAALLPEGFTLADEDPGAVAAIWADWQSTGEDPAQLLDP IRVQYKEMFIVVRCKFQGKTYSRCVYIWVDKEFAMLRGQHQGYPKKLGSIHMSRPVNVGKAGPRLEPGGTFGVTLAAFDR RLAEGRFTITEACERPGFVNGHPMAHNRWMPAIETDGSQSLNEVVTMSSYDVDFGRCFRGDFDLDYFDSPVEELLDIAPQ EKIAGYWHEVGVSWRAGTTLWRDNL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29895; Mature: 29764
Theoretical pI: Translated: 5.38; Mature: 5.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDLKGLFYPRTPTGKASIVPPVPWHYSGELITLEYRTDPAKVAALLPEGFTLADEDPGA CCCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEEECCCHHHHHEECCCCCEECCCCCCE VAAIWADWQSTGEDPAQLLDPIRVQYKEMFIVVRCKFQGKTYSRCVYIWVDKEFAMLRGQ EEEEEECCCCCCCCHHHHHHHHHHEEEEEEEEEEEEECCCCCCEEEEEEECCHHHHHCCC HQGYPKKLGSIHMSRPVNVGKAGPRLEPGGTFGVTLAAFDRRLAEGRFTITEACERPGFV CCCCCHHHCCEECCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCEEEHHHHCCCCCC NGHPMAHNRWMPAIETDGSQSLNEVVTMSSYDVDFGRCFRGDFDLDYFDSPVEELLDIAP CCCCCCCCCCCCCEECCCCHHHHHHEEECCCCCCHHHEECCCCCCCCCCCHHHHHHHCCC QEKIAGYWHEVGVSWRAGTTLWRDNL HHHHHHHHHHHCCEECCCCEEECCCC >Mature Secondary Structure TDLKGLFYPRTPTGKASIVPPVPWHYSGELITLEYRTDPAKVAALLPEGFTLADEDPGA CCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEEECCCHHHHHEECCCCCEECCCCCCE VAAIWADWQSTGEDPAQLLDPIRVQYKEMFIVVRCKFQGKTYSRCVYIWVDKEFAMLRGQ EEEEEECCCCCCCCHHHHHHHHHHEEEEEEEEEEEEECCCCCCEEEEEEECCHHHHHCCC HQGYPKKLGSIHMSRPVNVGKAGPRLEPGGTFGVTLAAFDRRLAEGRFTITEACERPGFV CCCCCHHHCCEECCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCEEEHHHHCCCCCC NGHPMAHNRWMPAIETDGSQSLNEVVTMSSYDVDFGRCFRGDFDLDYFDSPVEELLDIAP CCCCCCCCCCCCCEECCCCHHHHHHEEECCCCCCHHHEECCCCCCCCCCCHHHHHHHCCC QEKIAGYWHEVGVSWRAGTTLWRDNL HHHHHHHHHHHCCEECCCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA