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The map label for this gene is rarA [H]

Identifier: 87200560

GI number: 87200560

Start: 2750630

End: 2751988

Strand: Direct

Name: rarA [H]

Synonym: Saro_2547

Alternate gene names: 87200560

Gene position: 2750630-2751988 (Clockwise)

Preceding gene: 87200557

Following gene: 87200561

Centisome position: 77.23

GC content: 67.84

Gene sequence:

>1359_bases
ATGCAATTTTCCGCGCAGGCACCTATTTCCGCAGGGATGGCAGACCTCTTCGCCCCGCCTCCGCAGGATCGCCCGCCGCC
CGAAGCCTCGGCGGAAGGACCGCTGGCCGACCGGCTGCGCCCGCGCGACCTGTCGGAAATCATCGGGCAGGACCACCTGA
CCGGGCCGGACGGCGCCATCGGGCGGATGGTCGCGGCAGGCAAGCTTACCTCGATGATCCTGTGGGGGCCGCCGGGCACC
GGCAAGACCAGCATCGCCCGCCTGCTCGCCGAGGCGGTGGGCATGCGCTACGTCGCGATCAGCGCCGTGTTCTCGGGCGT
TGCGGACCTCAAGAAGGCCTTTGCAGAGGCAGAGGCGATGGCACTTGCGGGGCGGCGAACCCTGCTGTTCGTCGACGAGA
TCCACCGCTTCAACCGCGCCCAGCAGGACGGCTTCCTGCCCTTCGTGGAAAACGGCACCGTCACGCTCGTCGGCGCGACG
ACCGAGAACCCGAGCTTCGCCCTCAACGCCGCACTTCTTTCCCGGGCACAGGTACTGATCCTGCATCGGCTCGATGCGGC
GGCGCTGGGCACACTTCTCGACCGGGCCGAGGACGTCACCGGCCTTCGCCTTCCCCTCACCCCGCCCGCGCGCGAGGCGC
TGGTCGCCTCGGCCGATGGCGACGGGCGTTTCCTGCTGAACCAGGCGGAGATGCTGTTCGACGTATCGCTGCCCGCGCCG
CTCGATCCCGAAGGCCTCGGCAAGTTCCTGATGCGGCGGGTCGCTGTCTACGACAAGGACCGCGAAGGGCACTACAACCT
GATCTCGGCGCTGCACAAATCGGTGCGCGGTTCCGATCCGCAGGCGGCGCTCTATTATCTCGCGCGAATGCTCGTCGCGG
GCGAGGAACCGCTCTACCTGCTGCGCCGCATGGTGCGCATGGCGGTGGAGGACATCGGCCTCGCCGATCCGCAGGCACTC
GTCCAGTGCCTTGCCGCCAAGGATGCCTACGAGTTCCTCGGCAGTCCGGAAGGCGAACTCGCCATCGTCCAGGCGCTGCT
GTACCTTGCCACCGCGCCCAAATCCAACGCCGCCTATGCCGCGCACAAGGCGGCGTGGAAGTCCGCGCGCGAGACGGGCT
CGCTCATGCCTCCCGCCAACATCCTCAACGCGCCGACCAAGCTGATGAAGGACATCGGCTACGGCAAGGGCTATGCCTAC
GACCACAACGCCGAGGACGGGTTTTCGGGCGCGAACTACTGGCCCGATGGCATGGCGCCGCAGACTTACTACACCCCGGT
CGAGCGTGGGTTCGAGCGCGAGGTTCTGAAACGCCTCGAATGGTGGGACCGCAAGCGCCGCGAGCGCGAGGGCGGATGA

Upstream 100 bases:

>100_bases
TTCCGGCCGCAATTGTCGCGGCCACGTTCGAAATGCATGTGCATGTTCCTTTTCATGATGGCTCTAAGATATATCTTAAT
TGCGATCATGCAAGAGGCTG

Downstream 100 bases:

>100_bases
ACCCGGGGCGTTTCGGGCATTTCGTCGCGATCGACTGGTCGGGCGCCGCGGGCGAGCGCCACAAGGGCATCGCGGTGGCC
ATGGCCGCGCGCGGGGATGC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MQFSAQAPISAGMADLFAPPPQDRPPPEASAEGPLADRLRPRDLSEIIGQDHLTGPDGAIGRMVAAGKLTSMILWGPPGT
GKTSIARLLAEAVGMRYVAISAVFSGVADLKKAFAEAEAMALAGRRTLLFVDEIHRFNRAQQDGFLPFVENGTVTLVGAT
TENPSFALNAALLSRAQVLILHRLDAAALGTLLDRAEDVTGLRLPLTPPAREALVASADGDGRFLLNQAEMLFDVSLPAP
LDPEGLGKFLMRRVAVYDKDREGHYNLISALHKSVRGSDPQAALYYLARMLVAGEEPLYLLRRMVRMAVEDIGLADPQAL
VQCLAAKDAYEFLGSPEGELAIVQALLYLATAPKSNAAYAAHKAAWKSARETGSLMPPANILNAPTKLMKDIGYGKGYAY
DHNAEDGFSGANYWPDGMAPQTYYTPVERGFEREVLKRLEWWDRKRREREGG

Sequences:

>Translated_452_residues
MQFSAQAPISAGMADLFAPPPQDRPPPEASAEGPLADRLRPRDLSEIIGQDHLTGPDGAIGRMVAAGKLTSMILWGPPGT
GKTSIARLLAEAVGMRYVAISAVFSGVADLKKAFAEAEAMALAGRRTLLFVDEIHRFNRAQQDGFLPFVENGTVTLVGAT
TENPSFALNAALLSRAQVLILHRLDAAALGTLLDRAEDVTGLRLPLTPPAREALVASADGDGRFLLNQAEMLFDVSLPAP
LDPEGLGKFLMRRVAVYDKDREGHYNLISALHKSVRGSDPQAALYYLARMLVAGEEPLYLLRRMVRMAVEDIGLADPQAL
VQCLAAKDAYEFLGSPEGELAIVQALLYLATAPKSNAAYAAHKAAWKSARETGSLMPPANILNAPTKLMKDIGYGKGYAY
DHNAEDGFSGANYWPDGMAPQTYYTPVERGFEREVLKRLEWWDRKRREREGG
>Mature_452_residues
MQFSAQAPISAGMADLFAPPPQDRPPPEASAEGPLADRLRPRDLSEIIGQDHLTGPDGAIGRMVAAGKLTSMILWGPPGT
GKTSIARLLAEAVGMRYVAISAVFSGVADLKKAFAEAEAMALAGRRTLLFVDEIHRFNRAQQDGFLPFVENGTVTLVGAT
TENPSFALNAALLSRAQVLILHRLDAAALGTLLDRAEDVTGLRLPLTPPAREALVASADGDGRFLLNQAEMLFDVSLPAP
LDPEGLGKFLMRRVAVYDKDREGHYNLISALHKSVRGSDPQAALYYLARMLVAGEEPLYLLRRMVRMAVEDIGLADPQAL
VQCLAAKDAYEFLGSPEGELAIVQALLYLATAPKSNAAYAAHKAAWKSARETGSLMPPANILNAPTKLMKDIGYGKGYAY
DHNAEDGFSGANYWPDGMAPQTYYTPVERGFEREVLKRLEWWDRKRREREGG

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=458, Percent_Identity=38.646288209607, Blast_Score=307, Evalue=1e-83,
Organism=Homo sapiens, GI18426904, Length=458, Percent_Identity=34.4978165938865, Blast_Score=252, Evalue=4e-67,
Organism=Escherichia coli, GI1787119, Length=419, Percent_Identity=47.4940334128878, Blast_Score=360, Evalue=1e-101,
Organism=Saccharomyces cerevisiae, GI6324111, Length=423, Percent_Identity=41.6075650118203, Blast_Score=295, Evalue=9e-81,
Organism=Saccharomyces cerevisiae, GI6324039, Length=203, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 49027; Mature: 49027

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFSAQAPISAGMADLFAPPPQDRPPPEASAEGPLADRLRPRDLSEIIGQDHLTGPDGAI
CCCCCCCCHHHCHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHCCCCCCCCCCHH
GRMVAAGKLTSMILWGPPGTGKTSIARLLAEAVGMRYVAISAVFSGVADLKKAFAEAEAM
HHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALAGRRTLLFVDEIHRFNRAQQDGFLPFVENGTVTLVGATTENPSFALNAALLSRAQVLI
HHHCCCEEEHHHHHHHHHHHHCCCCCEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
LHRLDAAALGTLLDRAEDVTGLRLPLTPPAREALVASADGDGRFLLNQAEMLFDVSLPAP
HHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHEEECCCCCCCEEEECHHHHEEECCCCC
LDPEGLGKFLMRRVAVYDKDREGHYNLISALHKSVRGSDPQAALYYLARMLVAGEEPLYL
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHH
LRRMVRMAVEDIGLADPQALVQCLAAKDAYEFLGSPEGELAIVQALLYLATAPKSNAAYA
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHH
AHKAAWKSARETGSLMPPANILNAPTKLMKDIGYGKGYAYDHNAEDGFSGANYWPDGMAP
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
QTYYTPVERGFEREVLKRLEWWDRKRREREGG
CCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQFSAQAPISAGMADLFAPPPQDRPPPEASAEGPLADRLRPRDLSEIIGQDHLTGPDGAI
CCCCCCCCHHHCHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHCCCCCCCCCCHH
GRMVAAGKLTSMILWGPPGTGKTSIARLLAEAVGMRYVAISAVFSGVADLKKAFAEAEAM
HHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALAGRRTLLFVDEIHRFNRAQQDGFLPFVENGTVTLVGATTENPSFALNAALLSRAQVLI
HHHCCCEEEHHHHHHHHHHHHCCCCCEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
LHRLDAAALGTLLDRAEDVTGLRLPLTPPAREALVASADGDGRFLLNQAEMLFDVSLPAP
HHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHEEECCCCCCCEEEECHHHHEEECCCCC
LDPEGLGKFLMRRVAVYDKDREGHYNLISALHKSVRGSDPQAALYYLARMLVAGEEPLYL
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHH
LRRMVRMAVEDIGLADPQALVQCLAAKDAYEFLGSPEGELAIVQALLYLATAPKSNAAYA
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHH
AHKAAWKSARETGSLMPPANILNAPTKLMKDIGYGKGYAYDHNAEDGFSGANYWPDGMAP
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
QTYYTPVERGFEREVLKRLEWWDRKRREREGG
CCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]