| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is typA [H]
Identifier: 87200555
GI number: 87200555
Start: 2745439
End: 2747283
Strand: Direct
Name: typA [H]
Synonym: Saro_2542
Alternate gene names: 87200555
Gene position: 2745439-2747283 (Clockwise)
Preceding gene: 87200553
Following gene: 87200557
Centisome position: 77.08
GC content: 64.88
Gene sequence:
>1845_bases ATGTCGCTGCCCCTGCGCAACATCGCGATCATCGCACACGTCGACCACGGCAAGACCACGCTCGTGGACCAGCTCTTCCG CCAGTCCGGCACCTTCCGCGACAACCAGCGCGTCGAAGAGCGCGCGATGGACTCCAACGACCTCGAGAAGGAACGCGGGA TCACCATTCTCGCGAAGTGCACCTCGGTCGAATGGACCTCGCCGACCTCGGGCGAGACCACCCGCATCAACATCGTCGAC ACCCCCGGCCACGCCGACTTCGGCGGCGAGGTCGAGCGCATCCTCTCGATGGTCGACGGCGTGATCCTGCTGGTCGACAG CTCGGAAGGCGCGATGCCGCAGACCAAGTTCGTCACCGGCAAGGCGCTCGCCCTCGGTCTCAAGCCGATCGTGGTGGTCA ACAAGATCGACCGTCCCGACGGCCGCGCGCAGGAAGTGCTCGACGAGGTGTTCGACCTCTTCGTCAGCCTCGACGCCAAC GACGAGCAGCTCGAATTCCCGGTGCTCTACGCTTCGGGCCGCAATGGCTACGCCTCGGACAACGAGGAAGCTCGTGAAGG CACGCTCGAGCCGCTGTTCGAGAAGATCGTCAGCCACGTGCCGGCGCCGAACCTCGACGTCGACGGTCCGTTCAGCTTCC TCGCCACCCTGCTCGACCGTGACAACTTCATGGGCCGCGTGCTGACCGGTCGCGTCCAGTCGGGCACGATCAAGGTCAAC CAGCCGATCCACGCGCTCGACGCCGACGGCAAGGTGATCGAAGTGGGCCGCGCCTCCAAGCTGATGAGCTTCAACGGTCT TGATCGCGTGCCCGTCGAGGAAGCCAAGGCAGGTGACATCATCGCGCTTGCCGGCCTCGAAAAGGCCACCGTCGCCAACA CCATCGCCGACCCCTCCGTGACCGAGCCGATCGCCTCGCAGCCGATCGATCCGCCGACCCTCGCCATGCGCTTCGCCGTG AACGACAGCCCGTTCGCCGGCCGCGAAGGCGACAAGGTGACCAGCCGCATGATCCGCGATCGCCTGCTGCGCGAGGCGGA AACCAACGTCGCCATCCGCGTGACGGAATCGGCTGACAAGGACAGCTTCGAAGTTGCCGGTCGCGGCGAACTCCAGCTCG GCGTGCTGATCGAGACCATGCGCCGCGAAGGCTTCGAGCTGGGCATCAGCCGCCCCCGCGTGCTGTTCCAGACCGACGAG AACGGCCAGCGCACCGAACCGTATGAAACCGTTGTTATCGACGTGGACGACGAGTTCTCCGGGACGGTCGTCGAGAAGAT GCAGCGCCGCAAGGCCGAGCTTACCGACATGCGCCCGTCGGGTGCCGGCAAGACCCGCATCCTGTTCTCGGCGCCGTCGC GCGGCCTCATCGGCTACCACGGCGAGTTCCTTTCGGACACGCGCGGCACCGGCATCATGAACCGCCTGTTCGAGAAGTAC GGCCCCCACAAGGGCCCGATCGAAGGCCGCCAGAACGGCGTGCTGATCTCGAACGGCACCGGCGAGGCCGTGGGCTACGC GCTCAACAGCCTCGAGGATCGTGGTATCCTGTTCGTGCGCCCGCAGGACAAGATCTACGAAGGCATGATCATCGGCGAGA ACGCCAAGCCGGAAGACCTTGAAGTCAACCCGATGAAGTCCAAGCAGCTCACGAACTTCCGTTCGACGGGCAAGGACGAC GCGATCCGCCTGACCCCGCCGAAGATCATGACGCTGGAACAGGCCATCGCCTACATCGACGACGACGAAATGGTCGAAGT CACGCCCAAGACCATCCGCCTGCGCAAGGCGATCCTCGATCCGAACGAACGCAAGAAGGCGTCGCGGAAGAAGGAAGCGG CATAA
Upstream 100 bases:
>100_bases TGCTTGCCGCAGCGCACAATGTCCTGTAAGCGCGCGCCGATATTCGGGCGGGCAAAGCTTGTGCCGAACGCCACCCGATT CCATTACGAAAGCCATTCCA
Downstream 100 bases:
>100_bases CGAAACACGAAGGGCGGCCCTCACAGGCCGCCCTTCCTGCATTCAGCCCTTCAAATCCGGCCATCAATAGTCAGCCGCAC CCCAGTTCCTAGGCGGATTG
Product: GTP-binding protein TypA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 614; Mature: 613
Protein sequence:
>614_residues MSLPLRNIAIIAHVDHGKTTLVDQLFRQSGTFRDNQRVEERAMDSNDLEKERGITILAKCTSVEWTSPTSGETTRINIVD TPGHADFGGEVERILSMVDGVILLVDSSEGAMPQTKFVTGKALALGLKPIVVVNKIDRPDGRAQEVLDEVFDLFVSLDAN DEQLEFPVLYASGRNGYASDNEEAREGTLEPLFEKIVSHVPAPNLDVDGPFSFLATLLDRDNFMGRVLTGRVQSGTIKVN QPIHALDADGKVIEVGRASKLMSFNGLDRVPVEEAKAGDIIALAGLEKATVANTIADPSVTEPIASQPIDPPTLAMRFAV NDSPFAGREGDKVTSRMIRDRLLREAETNVAIRVTESADKDSFEVAGRGELQLGVLIETMRREGFELGISRPRVLFQTDE NGQRTEPYETVVIDVDDEFSGTVVEKMQRRKAELTDMRPSGAGKTRILFSAPSRGLIGYHGEFLSDTRGTGIMNRLFEKY GPHKGPIEGRQNGVLISNGTGEAVGYALNSLEDRGILFVRPQDKIYEGMIIGENAKPEDLEVNPMKSKQLTNFRSTGKDD AIRLTPPKIMTLEQAIAYIDDDEMVEVTPKTIRLRKAILDPNERKKASRKKEAA
Sequences:
>Translated_614_residues MSLPLRNIAIIAHVDHGKTTLVDQLFRQSGTFRDNQRVEERAMDSNDLEKERGITILAKCTSVEWTSPTSGETTRINIVD TPGHADFGGEVERILSMVDGVILLVDSSEGAMPQTKFVTGKALALGLKPIVVVNKIDRPDGRAQEVLDEVFDLFVSLDAN DEQLEFPVLYASGRNGYASDNEEAREGTLEPLFEKIVSHVPAPNLDVDGPFSFLATLLDRDNFMGRVLTGRVQSGTIKVN QPIHALDADGKVIEVGRASKLMSFNGLDRVPVEEAKAGDIIALAGLEKATVANTIADPSVTEPIASQPIDPPTLAMRFAV NDSPFAGREGDKVTSRMIRDRLLREAETNVAIRVTESADKDSFEVAGRGELQLGVLIETMRREGFELGISRPRVLFQTDE NGQRTEPYETVVIDVDDEFSGTVVEKMQRRKAELTDMRPSGAGKTRILFSAPSRGLIGYHGEFLSDTRGTGIMNRLFEKY GPHKGPIEGRQNGVLISNGTGEAVGYALNSLEDRGILFVRPQDKIYEGMIIGENAKPEDLEVNPMKSKQLTNFRSTGKDD AIRLTPPKIMTLEQAIAYIDDDEMVEVTPKTIRLRKAILDPNERKKASRKKEAA >Mature_613_residues SLPLRNIAIIAHVDHGKTTLVDQLFRQSGTFRDNQRVEERAMDSNDLEKERGITILAKCTSVEWTSPTSGETTRINIVDT PGHADFGGEVERILSMVDGVILLVDSSEGAMPQTKFVTGKALALGLKPIVVVNKIDRPDGRAQEVLDEVFDLFVSLDAND EQLEFPVLYASGRNGYASDNEEAREGTLEPLFEKIVSHVPAPNLDVDGPFSFLATLLDRDNFMGRVLTGRVQSGTIKVNQ PIHALDADGKVIEVGRASKLMSFNGLDRVPVEEAKAGDIIALAGLEKATVANTIADPSVTEPIASQPIDPPTLAMRFAVN DSPFAGREGDKVTSRMIRDRLLREAETNVAIRVTESADKDSFEVAGRGELQLGVLIETMRREGFELGISRPRVLFQTDEN GQRTEPYETVVIDVDDEFSGTVVEKMQRRKAELTDMRPSGAGKTRILFSAPSRGLIGYHGEFLSDTRGTGIMNRLFEKYG PHKGPIEGRQNGVLISNGTGEAVGYALNSLEDRGILFVRPQDKIYEGMIIGENAKPEDLEVNPMKSKQLTNFRSTGKDDA IRLTPPKIMTLEQAIAYIDDDEMVEVTPKTIRLRKAILDPNERKKASRKKEAA
Specific function: Not known; probably interacts with the ribosomes in a GTP dependent manner [H]
COG id: COG1217
COG function: function code T; Predicted membrane GTPase involved in stress response
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. TypA subfamily [H]
Homologues:
Organism=Homo sapiens, GI94966754, Length=134, Percent_Identity=42.5373134328358, Blast_Score=116, Evalue=6e-26, Organism=Homo sapiens, GI157426893, Length=312, Percent_Identity=29.8076923076923, Blast_Score=115, Evalue=1e-25, Organism=Homo sapiens, GI4503483, Length=144, Percent_Identity=36.8055555555556, Blast_Score=99, Evalue=1e-20, Organism=Homo sapiens, GI18390331, Length=139, Percent_Identity=37.410071942446, Blast_Score=93, Evalue=6e-19, Organism=Homo sapiens, GI310132016, Length=112, Percent_Identity=40.1785714285714, Blast_Score=90, Evalue=5e-18, Organism=Homo sapiens, GI310110807, Length=112, Percent_Identity=40.1785714285714, Blast_Score=90, Evalue=5e-18, Organism=Homo sapiens, GI310123363, Length=112, Percent_Identity=40.1785714285714, Blast_Score=90, Evalue=5e-18, Organism=Homo sapiens, GI25306287, Length=166, Percent_Identity=32.5301204819277, Blast_Score=87, Evalue=4e-17, Organism=Homo sapiens, GI25306283, Length=166, Percent_Identity=32.5301204819277, Blast_Score=87, Evalue=4e-17, Organism=Homo sapiens, GI19923640, Length=166, Percent_Identity=32.5301204819277, Blast_Score=87, Evalue=4e-17, Organism=Homo sapiens, GI217272894, Length=175, Percent_Identity=34.2857142857143, Blast_Score=86, Evalue=1e-16, Organism=Homo sapiens, GI217272892, Length=175, Percent_Identity=34.2857142857143, Blast_Score=86, Evalue=1e-16, Organism=Homo sapiens, GI34147630, Length=241, Percent_Identity=29.045643153527, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI5729864, Length=311, Percent_Identity=26.0450160771704, Blast_Score=72, Evalue=2e-12, Organism=Homo sapiens, GI94966752, Length=67, Percent_Identity=44.7761194029851, Blast_Score=71, Evalue=3e-12, Organism=Homo sapiens, GI223555963, Length=311, Percent_Identity=26.0450160771704, Blast_Score=71, Evalue=3e-12, Organism=Escherichia coli, GI48994988, Length=606, Percent_Identity=52.4752475247525, Blast_Score=644, Evalue=0.0, Organism=Escherichia coli, GI1788922, Length=467, Percent_Identity=26.338329764454, Blast_Score=131, Evalue=1e-31, Organism=Escherichia coli, GI1789738, Length=148, Percent_Identity=37.1621621621622, Blast_Score=96, Evalue=6e-21, Organism=Escherichia coli, GI1789737, Length=246, Percent_Identity=32.1138211382114, Blast_Score=79, Evalue=9e-16, Organism=Escherichia coli, GI1790412, Length=246, Percent_Identity=32.1138211382114, Blast_Score=79, Evalue=9e-16, Organism=Escherichia coli, GI1790835, Length=152, Percent_Identity=32.2368421052632, Blast_Score=71, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17557151, Length=276, Percent_Identity=30.7971014492754, Blast_Score=121, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17556745, Length=148, Percent_Identity=36.4864864864865, Blast_Score=102, Evalue=7e-22, Organism=Caenorhabditis elegans, GI17533571, Length=178, Percent_Identity=37.6404494382022, Blast_Score=100, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17506493, Length=172, Percent_Identity=33.7209302325581, Blast_Score=96, Evalue=4e-20, Organism=Caenorhabditis elegans, GI71988811, Length=134, Percent_Identity=38.0597014925373, Blast_Score=94, Evalue=2e-19, Organism=Caenorhabditis elegans, GI71988819, Length=134, Percent_Identity=38.0597014925373, Blast_Score=94, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17552882, Length=135, Percent_Identity=34.0740740740741, Blast_Score=84, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17556456, Length=295, Percent_Identity=28.135593220339, Blast_Score=80, Evalue=3e-15, Organism=Caenorhabditis elegans, GI25141371, Length=281, Percent_Identity=25.9786476868327, Blast_Score=66, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6323320, Length=494, Percent_Identity=26.7206477732794, Blast_Score=127, Evalue=4e-30, Organism=Saccharomyces cerevisiae, GI6324707, Length=160, Percent_Identity=38.125, Blast_Score=111, Evalue=4e-25, Organism=Saccharomyces cerevisiae, GI6320593, Length=160, Percent_Identity=38.125, Blast_Score=111, Evalue=4e-25, Organism=Saccharomyces cerevisiae, GI6323098, Length=139, Percent_Identity=38.1294964028777, Blast_Score=96, Evalue=1e-20, Organism=Saccharomyces cerevisiae, GI6324761, Length=249, Percent_Identity=30.1204819277108, Blast_Score=87, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6324166, Length=181, Percent_Identity=34.8066298342541, Blast_Score=84, Evalue=8e-17, Organism=Saccharomyces cerevisiae, GI6322359, Length=154, Percent_Identity=33.7662337662338, Blast_Score=84, Evalue=8e-17, Organism=Saccharomyces cerevisiae, GI6324550, Length=151, Percent_Identity=31.7880794701987, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6325337, Length=329, Percent_Identity=24.6200607902736, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6319594, Length=329, Percent_Identity=24.6200607902736, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI78706572, Length=403, Percent_Identity=29.2803970223325, Blast_Score=117, Evalue=2e-26, Organism=Drosophila melanogaster, GI24585711, Length=164, Percent_Identity=35.9756097560976, Blast_Score=99, Evalue=7e-21, Organism=Drosophila melanogaster, GI24585713, Length=164, Percent_Identity=35.9756097560976, Blast_Score=99, Evalue=7e-21, Organism=Drosophila melanogaster, GI24585709, Length=164, Percent_Identity=35.9756097560976, Blast_Score=99, Evalue=8e-21, Organism=Drosophila melanogaster, GI24582462, Length=151, Percent_Identity=36.4238410596026, Blast_Score=97, Evalue=4e-20, Organism=Drosophila melanogaster, GI281363316, Length=245, Percent_Identity=31.0204081632653, Blast_Score=96, Evalue=6e-20, Organism=Drosophila melanogaster, GI17864358, Length=245, Percent_Identity=31.0204081632653, Blast_Score=96, Evalue=6e-20, Organism=Drosophila melanogaster, GI19921738, Length=244, Percent_Identity=31.9672131147541, Blast_Score=96, Evalue=9e-20, Organism=Drosophila melanogaster, GI28574573, Length=158, Percent_Identity=37.9746835443038, Blast_Score=95, Evalue=2e-19, Organism=Drosophila melanogaster, GI21357743, Length=191, Percent_Identity=31.9371727748691, Blast_Score=88, Evalue=2e-17, Organism=Drosophila melanogaster, GI221458488, Length=169, Percent_Identity=36.094674556213, Blast_Score=85, Evalue=1e-16, Organism=Drosophila melanogaster, GI19922690, Length=308, Percent_Identity=28.2467532467532, Blast_Score=70, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR000795 - InterPro: IPR005225 - InterPro: IPR000640 - InterPro: IPR004161 - InterPro: IPR009000 - InterPro: IPR006298 [H]
Pfam domain/function: PF00679 EFG_C; PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2 [H]
EC number: NA
Molecular weight: Translated: 67529; Mature: 67398
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: PS00301 EFACTOR_GTP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLPLRNIAIIAHVDHGKTTLVDQLFRQSGTFRDNQRVEERAMDSNDLEKERGITILAKC CCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCCCEEEEEE TSVEWTSPTSGETTRINIVDTPGHADFGGEVERILSMVDGVILLVDSSEGAMPQTKFVTG CCCEECCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCEEEECC KALALGLKPIVVVNKIDRPDGRAQEVLDEVFDLFVSLDANDEQLEFPVLYASGRNGYASD CEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHEECCCCCCEEEEEEEEECCCCCCCCC NEEAREGTLEPLFEKIVSHVPAPNLDVDGPFSFLATLLDRDNFMGRVLTGRVQSGTIKVN CCHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECEECCCEEEEC QPIHALDADGKVIEVGRASKLMSFNGLDRVPVEEAKAGDIIALAGLEKATVANTIADPSV CCEEEECCCCCEEECCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCC TEPIASQPIDPPTLAMRFAVNDSPFAGREGDKVTSRMIRDRLLREAETNVAIRVTESADK CCHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC DSFEVAGRGELQLGVLIETMRREGFELGISRPRVLFQTDENGQRTEPYETVVIDVDDEFS CCEEECCCCCEEHHHHHHHHHHCCCEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCCC GTVVEKMQRRKAELTDMRPSGAGKTRILFSAPSRGLIGYHGEFLSDTRGTGIMNRLFEKY CHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEECCCHHCCCCCCHHHHHHHHHH GPHKGPIEGRQNGVLISNGTGEAVGYALNSLEDRGILFVRPQDKIYEGMIIGENAKPEDL CCCCCCCCCCCCCEEEECCCCHHHHHHHHCCCCCCEEEECCCHHHHCCEEECCCCCCCCC EVNPMKSKQLTNFRSTGKDDAIRLTPPKIMTLEQAIAYIDDDEMVEVTPKTIRLRKAILD CCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCC PNERKKASRKKEAA CCHHHHHHHHHCCC >Mature Secondary Structure SLPLRNIAIIAHVDHGKTTLVDQLFRQSGTFRDNQRVEERAMDSNDLEKERGITILAKC CCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCCCEEEEEE TSVEWTSPTSGETTRINIVDTPGHADFGGEVERILSMVDGVILLVDSSEGAMPQTKFVTG CCCEECCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCEEEECC KALALGLKPIVVVNKIDRPDGRAQEVLDEVFDLFVSLDANDEQLEFPVLYASGRNGYASD CEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHEECCCCCCEEEEEEEEECCCCCCCCC NEEAREGTLEPLFEKIVSHVPAPNLDVDGPFSFLATLLDRDNFMGRVLTGRVQSGTIKVN CCHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECEECCCEEEEC QPIHALDADGKVIEVGRASKLMSFNGLDRVPVEEAKAGDIIALAGLEKATVANTIADPSV CCEEEECCCCCEEECCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCC TEPIASQPIDPPTLAMRFAVNDSPFAGREGDKVTSRMIRDRLLREAETNVAIRVTESADK CCHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC DSFEVAGRGELQLGVLIETMRREGFELGISRPRVLFQTDENGQRTEPYETVVIDVDDEFS CCEEECCCCCEEHHHHHHHHHHCCCEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCCC GTVVEKMQRRKAELTDMRPSGAGKTRILFSAPSRGLIGYHGEFLSDTRGTGIMNRLFEKY CHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEECCCHHCCCCCCHHHHHHHHHH GPHKGPIEGRQNGVLISNGTGEAVGYALNSLEDRGILFVRPQDKIYEGMIIGENAKPEDL CCCCCCCCCCCCCEEEECCCCHHHHHHHHCCCCCCEEEECCCHHHHCCEEECCCCCCCCC EVNPMKSKQLTNFRSTGKDDAIRLTPPKIMTLEQAIAYIDDDEMVEVTPKTIRLRKAILD CCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCC PNERKKASRKKEAA CCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]