| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is irgA [H]
Identifier: 87200554
GI number: 87200554
Start: 2742309
End: 2744999
Strand: Reverse
Name: irgA [H]
Synonym: Saro_2541
Alternate gene names: 87200554
Gene position: 2744999-2742309 (Counterclockwise)
Preceding gene: 87200556
Following gene: 87200549
Centisome position: 77.07
GC content: 65.25
Gene sequence:
>2691_bases ATGAAATCCATTTCTGCCGGTCGCACCGGCCAGGCCGCGCTTCTCGTCGGTGCCTGCGGTCTTGCTCTTGCATTCTCGGC GACCGCCCAGGCCCGCACGCAGGACGCCGGGCCCGTCGAAGAGGCCCAGCCCGCGACCGATGCGCCCGAGCCGCAGGCCG ACGGAAACGAGATCATCGTCACCGCCACCAAGCGCGAGCAGACCCTTCAGGACGTTCCCGTCGCCGTTTCGGTGACCAGC GCGCGGACGCTCGAGCAGGCCCAGATCCGCGATCTCAAGGATCTCACCAGCGTCGTGCCCTCGCTGCGCGTGACCCAGCT CCAGTCGAGCGCGCAGACCAATTTCATCATCCGCGGCTTCGGCAACGGCGCCAACAATGCCGGGATCGAGCCATCGGTCG GCGTGTTCATCGACGGCGTCTACCGTTCGCGCTCCGCCGCCCAGATCGGCGATTTCCCCGACGTTCAGCGCATCGAGGTC CTGCGCGGCCCGCAGTCGACGCTGTTCGGCAAGAACGCCAGCGTGGGCGTCATCTCGATCGTCACGCAGGCGCCCAAGTT CGACTTCGGCGGCAATGTCGAGGCGAGCTATGGCAATTACGACGCGGTCGTCCTCAAGGGCGTGGTCACCGGTCCGATCA CCGACCAGCTCGCAGTCAGTCTGGCGGGCGGTCTCAATAAGCGGGACGGGTACAACAAGGACCTCGGCACCGGCAACCGG ACCAACGAGCGCGATCGCTGGTTCCTGCGCGGCCAGGCGCTTTGGGAGCCCAATGCCCAGGCCCGCGTCCGCCTTATCGG CGATTACTCCAAGATCGACGAGAACTGCTGCGGCGTCGTCAATCTCCAGCCCTCGTCGGCGACGCTGGCGGTCCAGGCGC TGGGTGGCCAGGTCAACGGCACCGACGAGATTTACGCGAACAAGGTCTATTCCAATATCGATTCCACCAACCGGATCGAG AACTGGGGCGCTTCCGGCCAGGTCGATTACGACCTCGGTCCGCTGACCTTCACGTCGATCACCGCGTTCCGACGGTCCAA TTCGCTGACGAACCAGGACTCCGACTTTTCCAGCGCCGACCTCATCGGCCAGAATACCGCCGACCAGCGCATCCGCACCT TCACCCAGGAGCTGCGCGTTGCCACCAACATGGACGGCCCGCTGAACTTTCTCGTCGGCGGCTACTACTTCAACGAGAAC ATCCGCCAGACGGGCCGCATCGCCTGGGGTGCGGACGCGCGCAGCTATGCCGACTTCATCATCCGGGGCCTGACCTCGAA CACCCAGTCGCTGTCCAGCCTGGAGACCACGTTCAGCGGCCTGACCGGGACCAACTACACCGGGCAGTTCTTCGCCGAAG GGCAGGGCCTCGACGAGCGCTATCGCCTTAAGAACGAGGCCTACTCCTTCTTCGGCCAGGCGGACTTCAAGATCGGCGAC CGCCTGACCGTGACTGGCGGCATCAACTACACCAACGACAAGAAGCGCTTCGCCGCCTCGGCCGACACGTCCGACGTGTT CTCCAGCCTCGACCTGGTGGACATCGGCGGGACCGCGCTGAGCCGTGGCTTCATTTCGACCGCGCTCGGTACGACCGATC CGCTCGCGATCGCCGCCTTCGCCAGCGCCAACCCCGACGTTTACGCCACGCTGCAAACGCAGGCTGCCGGCTTTGCCGCG CTCAACGCCCGCCTTTCCACCAGCGACGCGGCGGCAGACGCCAATCCGCTGACCGTCGGCAATCCGCTGCTTGCGCTCCA GGACCTGCAGTTCCTGCCGCCGTTCCTGGCGGTGCCCAATGCTGTCGAGCCGGGCCGGACCAACGACGACAAGTTCACTT ATGTCGTCCGCGTCGCCTATGACCTGACCGACAACATCAACGTCTATGCAAGCTACGCGACCGGCTTCAAGGCCAGCTCG ATCAACCTCTCGCGCGACAGCCGTCCGTTCGAGGCCGACCGCGAGCAATTGACCTCGCGCGGGTTGGCCGTGGTCAACCA GACCTATGGCAGCCGCTTTGCCGGACCCGAAAGTTCGACCGTCTATGAAATCGGGCTCAAGGCGGACTGGGGTCTCGTCA CTGCCAACGTCGCCGCGTTCGACCAGCGCATCAATGGCTTCCAGTCCAACACCTTCACCGGTTCGGGCTTCGTGCTGGCC AATGCGGGCAAGCAGTCGGTGCGCGGCCTGGAGTTCGAAGGCACGGTCAAGCCGGCCAAGGGCTGGCTGCTCAATGTCGG CGTGACCTACCTCGATCCCAAGTACGACAGCTTCGTGCTTTCGGCGGTGGGCGACCTGTCCAACACGCGCCCGGCCGGCA TTCCGGCGATTTCGTCGACCTTCGGCGCCAGCTACGACCACGAGTTCGCGGGTGGCGACCACCTGATCCTGCGCGGCGAT TTCCACTATGAATCGCCGGTTCAGATCGTCGAGGGCCTTCCGGGCTTCCTCGACGCGGGAACCAGCATCGCGGTGGCGGC GGCACGGCCGTTCCGGCGCGAGGTGAACGAGGCCAACGCGTCGATCACCTGGGCGATGCAGATGGGCCTGGAACTGACGG TGTGGGGGCGCAACCTCACCAACAACCGCTATCTGCTCTCGGTATTCGACACTCCGGCACAGCCCGGGTCGATCTCGGGC TATACCAGCCAGCCGCGTACCTACGGCGTGACCGGGCGCTTCCGGTTCTGA
Upstream 100 bases:
>100_bases CCTAAAAGACCTGAAGGGAAACACAGGATGTCCTTCCGGCCAAGGTGAAGGGGCTATCACAGTCTGCCAAAGCCCGGGTC AAAAGAGGAAAAGCAATCAC
Downstream 100 bases:
>100_bases GCCGGCTGCAAATGGCAAGACGGGAAGGGGGCCTTGGCGGGCCTCCTTCTGCTATCCGGAATGAGCGGCCCTACCGGGTC GCGGCAGTCAGTTCCTCGGC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 896; Mature: 896
Protein sequence:
>896_residues MKSISAGRTGQAALLVGACGLALAFSATAQARTQDAGPVEEAQPATDAPEPQADGNEIIVTATKREQTLQDVPVAVSVTS ARTLEQAQIRDLKDLTSVVPSLRVTQLQSSAQTNFIIRGFGNGANNAGIEPSVGVFIDGVYRSRSAAQIGDFPDVQRIEV LRGPQSTLFGKNASVGVISIVTQAPKFDFGGNVEASYGNYDAVVLKGVVTGPITDQLAVSLAGGLNKRDGYNKDLGTGNR TNERDRWFLRGQALWEPNAQARVRLIGDYSKIDENCCGVVNLQPSSATLAVQALGGQVNGTDEIYANKVYSNIDSTNRIE NWGASGQVDYDLGPLTFTSITAFRRSNSLTNQDSDFSSADLIGQNTADQRIRTFTQELRVATNMDGPLNFLVGGYYFNEN IRQTGRIAWGADARSYADFIIRGLTSNTQSLSSLETTFSGLTGTNYTGQFFAEGQGLDERYRLKNEAYSFFGQADFKIGD RLTVTGGINYTNDKKRFAASADTSDVFSSLDLVDIGGTALSRGFISTALGTTDPLAIAAFASANPDVYATLQTQAAGFAA LNARLSTSDAAADANPLTVGNPLLALQDLQFLPPFLAVPNAVEPGRTNDDKFTYVVRVAYDLTDNINVYASYATGFKASS INLSRDSRPFEADREQLTSRGLAVVNQTYGSRFAGPESSTVYEIGLKADWGLVTANVAAFDQRINGFQSNTFTGSGFVLA NAGKQSVRGLEFEGTVKPAKGWLLNVGVTYLDPKYDSFVLSAVGDLSNTRPAGIPAISSTFGASYDHEFAGGDHLILRGD FHYESPVQIVEGLPGFLDAGTSIAVAAARPFRREVNEANASITWAMQMGLELTVWGRNLTNNRYLLSVFDTPAQPGSISG YTSQPRTYGVTGRFRF
Sequences:
>Translated_896_residues MKSISAGRTGQAALLVGACGLALAFSATAQARTQDAGPVEEAQPATDAPEPQADGNEIIVTATKREQTLQDVPVAVSVTS ARTLEQAQIRDLKDLTSVVPSLRVTQLQSSAQTNFIIRGFGNGANNAGIEPSVGVFIDGVYRSRSAAQIGDFPDVQRIEV LRGPQSTLFGKNASVGVISIVTQAPKFDFGGNVEASYGNYDAVVLKGVVTGPITDQLAVSLAGGLNKRDGYNKDLGTGNR TNERDRWFLRGQALWEPNAQARVRLIGDYSKIDENCCGVVNLQPSSATLAVQALGGQVNGTDEIYANKVYSNIDSTNRIE NWGASGQVDYDLGPLTFTSITAFRRSNSLTNQDSDFSSADLIGQNTADQRIRTFTQELRVATNMDGPLNFLVGGYYFNEN IRQTGRIAWGADARSYADFIIRGLTSNTQSLSSLETTFSGLTGTNYTGQFFAEGQGLDERYRLKNEAYSFFGQADFKIGD RLTVTGGINYTNDKKRFAASADTSDVFSSLDLVDIGGTALSRGFISTALGTTDPLAIAAFASANPDVYATLQTQAAGFAA LNARLSTSDAAADANPLTVGNPLLALQDLQFLPPFLAVPNAVEPGRTNDDKFTYVVRVAYDLTDNINVYASYATGFKASS INLSRDSRPFEADREQLTSRGLAVVNQTYGSRFAGPESSTVYEIGLKADWGLVTANVAAFDQRINGFQSNTFTGSGFVLA NAGKQSVRGLEFEGTVKPAKGWLLNVGVTYLDPKYDSFVLSAVGDLSNTRPAGIPAISSTFGASYDHEFAGGDHLILRGD FHYESPVQIVEGLPGFLDAGTSIAVAAARPFRREVNEANASITWAMQMGLELTVWGRNLTNNRYLLSVFDTPAQPGSISG YTSQPRTYGVTGRFRF >Mature_896_residues MKSISAGRTGQAALLVGACGLALAFSATAQARTQDAGPVEEAQPATDAPEPQADGNEIIVTATKREQTLQDVPVAVSVTS ARTLEQAQIRDLKDLTSVVPSLRVTQLQSSAQTNFIIRGFGNGANNAGIEPSVGVFIDGVYRSRSAAQIGDFPDVQRIEV LRGPQSTLFGKNASVGVISIVTQAPKFDFGGNVEASYGNYDAVVLKGVVTGPITDQLAVSLAGGLNKRDGYNKDLGTGNR TNERDRWFLRGQALWEPNAQARVRLIGDYSKIDENCCGVVNLQPSSATLAVQALGGQVNGTDEIYANKVYSNIDSTNRIE NWGASGQVDYDLGPLTFTSITAFRRSNSLTNQDSDFSSADLIGQNTADQRIRTFTQELRVATNMDGPLNFLVGGYYFNEN IRQTGRIAWGADARSYADFIIRGLTSNTQSLSSLETTFSGLTGTNYTGQFFAEGQGLDERYRLKNEAYSFFGQADFKIGD RLTVTGGINYTNDKKRFAASADTSDVFSSLDLVDIGGTALSRGFISTALGTTDPLAIAAFASANPDVYATLQTQAAGFAA LNARLSTSDAAADANPLTVGNPLLALQDLQFLPPFLAVPNAVEPGRTNDDKFTYVVRVAYDLTDNINVYASYATGFKASS INLSRDSRPFEADREQLTSRGLAVVNQTYGSRFAGPESSTVYEIGLKADWGLVTANVAAFDQRINGFQSNTFTGSGFVLA NAGKQSVRGLEFEGTVKPAKGWLLNVGVTYLDPKYDSFVLSAVGDLSNTRPAGIPAISSTFGASYDHEFAGGDHLILRGD FHYESPVQIVEGLPGFLDAGTSIAVAAARPFRREVNEANASITWAMQMGLELTVWGRNLTNNRYLLSVFDTPAQPGSISG YTSQPRTYGVTGRFRF
Specific function: Involved in the initial step of iron uptake by binding ferric vibriobactin, an iron chelatin siderophore that allows V.cholerae to extract iron from the environment [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=149, Percent_Identity=30.8724832214765, Blast_Score=69, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 95939; Mature: 95939
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSISAGRTGQAALLVGACGLALAFSATAQARTQDAGPVEEAQPATDAPEPQADGNEIIV CCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEE TATKREQTLQDVPVAVSVTSARTLEQAQIRDLKDLTSVVPSLRVTQLQSSAQTNFIIRGF EECCCHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEC GNGANNAGIEPSVGVFIDGVYRSRSAAQIGDFPDVQRIEVLRGPQSTLFGKNASVGVISI CCCCCCCCCCCCCCEEEECHHCCCCCCCCCCCCCCHHHHHHCCCCHHHCCCCCCCEEEEE VTQAPKFDFGGNVEASYGNYDAVVLKGVVTGPITDQLAVSLAGGLNKRDGYNKDLGTGNR EECCCCCCCCCCEEECCCCCCEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC TNERDRWFLRGQALWEPNAQARVRLIGDYSKIDENCCGVVNLQPSSATLAVQALGGQVNG CCCCCEEEEECCEEECCCCCEEEEEEECHHHHCCCCCEEEEECCCCCEEEEEECCCCCCC TDEIYANKVYSNIDSTNRIENWGASGQVDYDLGPLTFTSITAFRRSNSLTNQDSDFSSAD CHHHHHHHHHHCCCCCCHHHCCCCCCEEECCCCCEEHHHHHHHHHCCCCCCCCCCCCCHH LIGQNTADQRIRTFTQELRVATNMDGPLNFLVGGYYFNENIRQTGRIAWGADARSYADFI HCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCHHHCCCEEECCCHHHHHHHH IRGLTSNTQSLSSLETTFSGLTGTNYTGQFFAEGQGLDERYRLKNEAYSFFGQADFKIGD HHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEECC RLTVTGGINYTNDKKRFAASADTSDVFSSLDLVDIGGTALSRGFISTALGTTDPLAIAAF EEEEECCCCCCCCHHHEECCCCHHHHHHCCCEEECCCHHHHHHHHHHHCCCCCCEEEEEE ASANPDVYATLQTQAAGFAALNARLSTSDAAADANPLTVGNPLLALQDLQFLPPFLAVPN ECCCCCEEEEEECCCCCEEEEECEECCCCCCCCCCCEECCCCHHHHHHHHHCCHHHHCCC AVEPGRTNDDKFTYVVRVAYDLTDNINVYASYATGFKASSINLSRDSRPFEADREQLTSR CCCCCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCEECEEECCCCCCCCHHHHHHHHHC GLAVVNQTYGSRFAGPESSTVYEIGLKADWGLVTANVAAFDQRINGFQSNTFTGSGFVLA CCEEEEHHHCCCCCCCCCCEEEEEECCCCCCEEEEHHHHHHHHHCCCCCCCCCCCCEEEE NAGKQSVRGLEFEGTVKPAKGWLLNVGVTYLDPKYDSFVLSAVGDLSNTRPAGIPAISST CCCHHHHCCCEECCCCCCCCCEEEEECEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHH FGASYDHEFAGGDHLILRGDFHYESPVQIVEGLPGFLDAGTSIAVAAARPFRREVNEANA CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHCCCCHHCCCCEEEEEECCHHHHHHHHCCC SITWAMQMGLELTVWGRNLTNNRYLLSVFDTPAQPGSISGYTSQPRTYGVTGRFRF EEEEEEECCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEECCCEEECC >Mature Secondary Structure MKSISAGRTGQAALLVGACGLALAFSATAQARTQDAGPVEEAQPATDAPEPQADGNEIIV CCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEE TATKREQTLQDVPVAVSVTSARTLEQAQIRDLKDLTSVVPSLRVTQLQSSAQTNFIIRGF EECCCHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEC GNGANNAGIEPSVGVFIDGVYRSRSAAQIGDFPDVQRIEVLRGPQSTLFGKNASVGVISI CCCCCCCCCCCCCCEEEECHHCCCCCCCCCCCCCCHHHHHHCCCCHHHCCCCCCCEEEEE VTQAPKFDFGGNVEASYGNYDAVVLKGVVTGPITDQLAVSLAGGLNKRDGYNKDLGTGNR EECCCCCCCCCCEEECCCCCCEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC TNERDRWFLRGQALWEPNAQARVRLIGDYSKIDENCCGVVNLQPSSATLAVQALGGQVNG CCCCCEEEEECCEEECCCCCEEEEEEECHHHHCCCCCEEEEECCCCCEEEEEECCCCCCC TDEIYANKVYSNIDSTNRIENWGASGQVDYDLGPLTFTSITAFRRSNSLTNQDSDFSSAD CHHHHHHHHHHCCCCCCHHHCCCCCCEEECCCCCEEHHHHHHHHHCCCCCCCCCCCCCHH LIGQNTADQRIRTFTQELRVATNMDGPLNFLVGGYYFNENIRQTGRIAWGADARSYADFI HCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCHHHCCCEEECCCHHHHHHHH IRGLTSNTQSLSSLETTFSGLTGTNYTGQFFAEGQGLDERYRLKNEAYSFFGQADFKIGD HHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEECC RLTVTGGINYTNDKKRFAASADTSDVFSSLDLVDIGGTALSRGFISTALGTTDPLAIAAF EEEEECCCCCCCCHHHEECCCCHHHHHHCCCEEECCCHHHHHHHHHHHCCCCCCEEEEEE ASANPDVYATLQTQAAGFAALNARLSTSDAAADANPLTVGNPLLALQDLQFLPPFLAVPN ECCCCCEEEEEECCCCCEEEEECEECCCCCCCCCCCEECCCCHHHHHHHHHCCHHHHCCC AVEPGRTNDDKFTYVVRVAYDLTDNINVYASYATGFKASSINLSRDSRPFEADREQLTSR CCCCCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCEECEEECCCCCCCCHHHHHHHHHC GLAVVNQTYGSRFAGPESSTVYEIGLKADWGLVTANVAAFDQRINGFQSNTFTGSGFVLA CCEEEEHHHCCCCCCCCCCEEEEEECCCCCCEEEEHHHHHHHHHCCCCCCCCCCCCEEEE NAGKQSVRGLEFEGTVKPAKGWLLNVGVTYLDPKYDSFVLSAVGDLSNTRPAGIPAISST CCCHHHHCCCEECCCCCCCCCEEEEECEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHH FGASYDHEFAGGDHLILRGDFHYESPVQIVEGLPGFLDAGTSIAVAAARPFRREVNEANA CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHCCCCHHCCCCEEEEEECCHHHHHHHHCCC SITWAMQMGLELTVWGRNLTNNRYLLSVFDTPAQPGSISGYTSQPRTYGVTGRFRF EEEEEEECCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEECCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1406279; 2174861 [H]