| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200528
Identifier: 87200528
GI number: 87200528
Start: 2719619
End: 2720899
Strand: Reverse
Name: 87200528
Synonym: Saro_2515
Alternate gene names: NA
Gene position: 2720899-2719619 (Counterclockwise)
Preceding gene: 87200529
Following gene: 87200526
Centisome position: 76.4
GC content: 69.24
Gene sequence:
>1281_bases ATGCGCTTGTTCGCCCGTGTTCTCTTGATTGCCTCGAGCCTTTGCGCCGCGCCGCTGGCCGCGCAGAAGCAGGAGGCGCT GACGCTCCTGCGACCCGACGCGGTATTCGACGGCGAGACCGCCGTCCTGCGCAAGGGTTGGGCCGTGCTGGTGCGGGGCA ACCGGATCGAGGCGGTGGGACCGGATGTCGGCGCACCTGCCGAGGCCTCGGTGCTGGAACTGCCGGGAACGACCCTGATG CCCGGCATGATCGAGGGGCATTCGCACCTCTTTCTCCACCCCTACAACGAGACGCCGTGGGACGACCAGGTCCTGCACGA ACCGCTCGCGTTGAGGACTGCGCGGGCGACGGTTCATGCGCGCGCGACGCTGATGGCAGGCTTTACCACCGTGCGTGATG TCGGCACCGAGGGCGCCGGCTATGCCGACGTGGGGCTGAAGCAGGCCATCGAGCAAGGGATCGTGCCGGGGCCGCGCATG CTGGTGGCGACGCGGGCCATCGTGGCGCCCGGCGCCTACGGGCCGCGCGGGTTCGAGCCGGGCGTGGCAGTACCGCTGGG GGCCGAGGAAGCCGGCGGGCCGGACCTTGTCGACGCGGTGCGTCGGCAGATCGGGGCGGGTGCGGATCTGGTGAAGGTCT ATGCCGACTACCGCTGGGGACCGGGCGAGCCGAGCCGCCCGACCTTTACCGAAGGCGAGCTGAAAGCGGCGGTAGAGGCT GCGCACAGCGCCGGGCGGCAGGTCGTCGCCCATGCCAGCACGGCGGAAGGAATGCGCCGTGCCGTGGCAGCGGGCGTCGA CACCATCGAGCATGGGGACGAAGGTACGCCGGAGGTCTTCGCCGCGATGAAGGCCAGGGGCGTGGGCTTCTGCCCGACGC TGGCGGCCGGGGATGCGGTGGCGCGCTATCGCGGGTGGAACGGTACAGCGCCCATGCCGAAGAGCGTGCAGGAAGGGTTC GATGCACTTGCAAAGGCGCGGAAGGCCGGGGTGGCGATTTGCATGGGCGGCGATGTTGGCGTCTATGCGCACGGCGACAA TGCGCGCGAAGCGGAAATGATGGTCAAGGGCGGAATGACGCCTGGCGAAGTGGCCATCGCCGCAACATCGGGCAATGCGC GCATGTTCGGCATCGGCGGCCGTCTGGGCGCGGTCAGGACGGGTATGCTGGCTGACCTCGTGGCGGTCGAAGGCAATCCG CTCGCCGATATTTCAGCGATCCGGAAGGTGGCGCTGGTGATGAAGGACGGCGTGCTGTGGAAAGGGCCTGTGGGGCGCTA G
Upstream 100 bases:
>100_bases GGCTTCCGCCTGAACCAGGCGCTGTCGAAAAAGGGTTGAGCAGCGGATTGGCGTTGCGCCGCCGCTGCGTATGATCGGGG CCAGACCGAAAGGAAGGCCC
Downstream 100 bases:
>100_bases GCGGCGTGGACGAGTTCCCCAGCGCCACGGCTGGAGGCAAAAACCGTCAGTTCAAGGAGGTGAGGTGAAGGAATATGTCG ATATTTCGAGCCGAACCGAC
Product: amidohydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 426; Mature: 426
Protein sequence:
>426_residues MRLFARVLLIASSLCAAPLAAQKQEALTLLRPDAVFDGETAVLRKGWAVLVRGNRIEAVGPDVGAPAEASVLELPGTTLM PGMIEGHSHLFLHPYNETPWDDQVLHEPLALRTARATVHARATLMAGFTTVRDVGTEGAGYADVGLKQAIEQGIVPGPRM LVATRAIVAPGAYGPRGFEPGVAVPLGAEEAGGPDLVDAVRRQIGAGADLVKVYADYRWGPGEPSRPTFTEGELKAAVEA AHSAGRQVVAHASTAEGMRRAVAAGVDTIEHGDEGTPEVFAAMKARGVGFCPTLAAGDAVARYRGWNGTAPMPKSVQEGF DALAKARKAGVAICMGGDVGVYAHGDNAREAEMMVKGGMTPGEVAIAATSGNARMFGIGGRLGAVRTGMLADLVAVEGNP LADISAIRKVALVMKDGVLWKGPVGR
Sequences:
>Translated_426_residues MRLFARVLLIASSLCAAPLAAQKQEALTLLRPDAVFDGETAVLRKGWAVLVRGNRIEAVGPDVGAPAEASVLELPGTTLM PGMIEGHSHLFLHPYNETPWDDQVLHEPLALRTARATVHARATLMAGFTTVRDVGTEGAGYADVGLKQAIEQGIVPGPRM LVATRAIVAPGAYGPRGFEPGVAVPLGAEEAGGPDLVDAVRRQIGAGADLVKVYADYRWGPGEPSRPTFTEGELKAAVEA AHSAGRQVVAHASTAEGMRRAVAAGVDTIEHGDEGTPEVFAAMKARGVGFCPTLAAGDAVARYRGWNGTAPMPKSVQEGF DALAKARKAGVAICMGGDVGVYAHGDNAREAEMMVKGGMTPGEVAIAATSGNARMFGIGGRLGAVRTGMLADLVAVEGNP LADISAIRKVALVMKDGVLWKGPVGR >Mature_426_residues MRLFARVLLIASSLCAAPLAAQKQEALTLLRPDAVFDGETAVLRKGWAVLVRGNRIEAVGPDVGAPAEASVLELPGTTLM PGMIEGHSHLFLHPYNETPWDDQVLHEPLALRTARATVHARATLMAGFTTVRDVGTEGAGYADVGLKQAIEQGIVPGPRM LVATRAIVAPGAYGPRGFEPGVAVPLGAEEAGGPDLVDAVRRQIGAGADLVKVYADYRWGPGEPSRPTFTEGELKAAVEA AHSAGRQVVAHASTAEGMRRAVAAGVDTIEHGDEGTPEVFAAMKARGVGFCPTLAAGDAVARYRGWNGTAPMPKSVQEGF DALAKARKAGVAICMGGDVGVYAHGDNAREAEMMVKGGMTPGEVAIAATSGNARMFGIGGRLGAVRTGMLADLVAVEGNP LADISAIRKVALVMKDGVLWKGPVGR
Specific function: Unknown
COG id: COG1228
COG function: function code Q; Imidazolonepropionase and related amidohydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To S.coelicolor SCO1861 [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6322248, Length=344, Percent_Identity=31.9767441860465, Blast_Score=132, Evalue=1e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006680 [H]
Pfam domain/function: PF01979 Amidohydro_1 [H]
EC number: NA
Molecular weight: Translated: 44125; Mature: 44125
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLFARVLLIASSLCAAPLAAQKQEALTLLRPDAVFDGETAVLRKGWAVLVRGNRIEAVG CHHHHHHHHHHHHHHHCCHHHHHHHHHHEECCCCCCCCCHHHHHCCCEEEEECCEEEECC PDVGAPAEASVLELPGTTLMPGMIEGHSHLFLHPYNETPWDDQVLHEPLALRTARATVHA CCCCCCCCCCEEECCCCCCCCCEECCCCEEEEECCCCCCCCHHHHHCHHHHHHHHHHHHH RATLMAGFTTVRDVGTEGAGYADVGLKQAIEQGIVPGPRMLVATRAIVAPGAYGPRGFEP HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCC GVAVPLGAEEAGGPDLVDAVRRQIGAGADLVKVYADYRWGPGEPSRPTFTEGELKAAVEA CCEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH AHSAGRQVVAHASTAEGMRRAVAAGVDTIEHGDEGTPEVFAAMKARGVGFCPTLAAGDAV HHHCCCEEEEECHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHCCCCCCCCHHCCCHH ARYRGWNGTAPMPKSVQEGFDALAKARKAGVAICMGGDVGVYAHGDNAREAEMMVKGGMT HHHCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCEEEEECCCCCHHHHHHHHCCCC PGEVAIAATSGNARMFGIGGRLGAVRTGMLADLVAVEGNPLADISAIRKVALVMKDGVLW CCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCEEE KGPVGR CCCCCC >Mature Secondary Structure MRLFARVLLIASSLCAAPLAAQKQEALTLLRPDAVFDGETAVLRKGWAVLVRGNRIEAVG CHHHHHHHHHHHHHHHCCHHHHHHHHHHEECCCCCCCCCHHHHHCCCEEEEECCEEEECC PDVGAPAEASVLELPGTTLMPGMIEGHSHLFLHPYNETPWDDQVLHEPLALRTARATVHA CCCCCCCCCCEEECCCCCCCCCEECCCCEEEEECCCCCCCCHHHHHCHHHHHHHHHHHHH RATLMAGFTTVRDVGTEGAGYADVGLKQAIEQGIVPGPRMLVATRAIVAPGAYGPRGFEP HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCC GVAVPLGAEEAGGPDLVDAVRRQIGAGADLVKVYADYRWGPGEPSRPTFTEGELKAAVEA CCEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH AHSAGRQVVAHASTAEGMRRAVAAGVDTIEHGDEGTPEVFAAMKARGVGFCPTLAAGDAV HHHCCCEEEEECHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHCCCCCCCCHHCCCHH ARYRGWNGTAPMPKSVQEGFDALAKARKAGVAICMGGDVGVYAHGDNAREAEMMVKGGMT HHHCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCEEEEECCCCCHHHHHHHHCCCC PGEVAIAATSGNARMFGIGGRLGAVRTGMLADLVAVEGNPLADISAIRKVALVMKDGVLW CCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCEEE KGPVGR CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]