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The map label for this gene is ybdL [C]

Identifier: 87200526

GI number: 87200526

Start: 2717729

End: 2718886

Strand: Reverse

Name: ybdL [C]

Synonym: Saro_2513

Alternate gene names: 87200526

Gene position: 2718886-2717729 (Counterclockwise)

Preceding gene: 87200528

Following gene: 87200521

Centisome position: 76.34

GC content: 66.15

Gene sequence:

>1158_bases
ATGATCGCTCAAGTCGAACCGTTTCACGCCATCGCCATCAGCCGGCTTGCCCATGACCTGGAGGCGGCCGGACAAAGCGT
CATCCACATGGAGTTCGGCCAGCCATCTACCGGTGCCCCGGCCGAGGCCATCGCGCTGGCCCACGAGGTGCTCGACAATG
AGGCGATGGGATACTGGGAGAGCGTTCCGCTGAAAGAACGGATCGCGCGCTCCTATGCCGAGAACCACGGCGTGAAGGTG
GAGCGGGAGCAGGTGATCCTGACCTGCGGCGCATCGCCCGCGTTCGTCATGGCGCTGTCGTGCCTGTTCCGCCCGGGTGC
GCGCATCGCGCTCGCGCGGCCGGGATACGTTGCCTACCGCAATTCGCTGAAGGCGATGTACCTTGAGCCGGTGGAGATGG
AGTGCGGGCCGGCCGAGCGTTTCCAGGTGACCGCCGCGGCCGTCGATGCGCTTGACCCGGTGCCCGATGGGCTGATCGTG
GCCAGCCCCGCCAACCCGACCGGCACGATCATCGAGCCGGGCGAACTGGCGGCGATTGCCGAGGTCTGCTGTCGCAAGGG
CATTCGGGTGATCTCGGACGAGATCTATCATGGCCTGAGCTACGGCAAGGCGGCGGCATCGATGCTGGAATATCTGCCCG
ATGCGGTGATCGTAAATTCCTTCTCCAAGTACTTCAGCATGGCCGGGTGGCGGCTGGGCTGGCTCGTGGTGCCGCCCAGC
CTGATCGACGCCGCGCGGGCGCGGATGGGGAGCCTGTTCCTGACGCCGCCGGTGCTGGCGCAGAAGGCCGGGCTCAAGGC
TTTCGATTGCCGCGCGGAACTGGACGGGCATGTCGAGACATATGCCCGCAATCGCGCGATCCTGCTCGAGGCGCTGCCGC
AGATGGGATTGGGCCGCATCGCGCCGCCGGATGGCGCGTTCTACATCTATGCCGATGCCAGCGAGTTCACCGACGACAGC
CTCGCCCTGTGCGAGGCGCTGTTGCGCGACACGGGCGTGGCAACCGCGCCAGGACTCGATTTCGACCCGGTGAACGGCAA
GCGCTTCATCCGTTTCAGCTTTGCCGTTTCGACGCCGCTGATCGAGGAGGCGGTGCGCAGGATCGGTCCGTGGTTTGCTG
CGCGGCGCGCAGTCAGTCCGGCACAAGCACCATCTTGA

Upstream 100 bases:

>100_bases
GCAGTAGAGCTGTATCTTCAGTTTGAGGCGCTGCATGGCCCCAGTTATCGAGACGCGGCATGGACTTGCAACTTGTTTCG
ACCGCAACTAGCACGCTGCG

Downstream 100 bases:

>100_bases
GCGCGCCTGCCTCGCGCGCCTCGAACATGCGGTAGGCTTCGGCGCCCTGCGACAGGGGCAGGCGGTGGCTGATGTAGCGT
TCGGGGCGCAGGCGGCCCGA

Product: aminotransferase

Products: NA

Alternate protein names: AspAT; Transaminase A [H]

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MIAQVEPFHAIAISRLAHDLEAAGQSVIHMEFGQPSTGAPAEAIALAHEVLDNEAMGYWESVPLKERIARSYAENHGVKV
EREQVILTCGASPAFVMALSCLFRPGARIALARPGYVAYRNSLKAMYLEPVEMECGPAERFQVTAAAVDALDPVPDGLIV
ASPANPTGTIIEPGELAAIAEVCCRKGIRVISDEIYHGLSYGKAAASMLEYLPDAVIVNSFSKYFSMAGWRLGWLVVPPS
LIDAARARMGSLFLTPPVLAQKAGLKAFDCRAELDGHVETYARNRAILLEALPQMGLGRIAPPDGAFYIYADASEFTDDS
LALCEALLRDTGVATAPGLDFDPVNGKRFIRFSFAVSTPLIEEAVRRIGPWFAARRAVSPAQAPS

Sequences:

>Translated_385_residues
MIAQVEPFHAIAISRLAHDLEAAGQSVIHMEFGQPSTGAPAEAIALAHEVLDNEAMGYWESVPLKERIARSYAENHGVKV
EREQVILTCGASPAFVMALSCLFRPGARIALARPGYVAYRNSLKAMYLEPVEMECGPAERFQVTAAAVDALDPVPDGLIV
ASPANPTGTIIEPGELAAIAEVCCRKGIRVISDEIYHGLSYGKAAASMLEYLPDAVIVNSFSKYFSMAGWRLGWLVVPPS
LIDAARARMGSLFLTPPVLAQKAGLKAFDCRAELDGHVETYARNRAILLEALPQMGLGRIAPPDGAFYIYADASEFTDDS
LALCEALLRDTGVATAPGLDFDPVNGKRFIRFSFAVSTPLIEEAVRRIGPWFAARRAVSPAQAPS
>Mature_385_residues
MIAQVEPFHAIAISRLAHDLEAAGQSVIHMEFGQPSTGAPAEAIALAHEVLDNEAMGYWESVPLKERIARSYAENHGVKV
EREQVILTCGASPAFVMALSCLFRPGARIALARPGYVAYRNSLKAMYLEPVEMECGPAERFQVTAAAVDALDPVPDGLIV
ASPANPTGTIIEPGELAAIAEVCCRKGIRVISDEIYHGLSYGKAAASMLEYLPDAVIVNSFSKYFSMAGWRLGWLVVPPS
LIDAARARMGSLFLTPPVLAQKAGLKAFDCRAELDGHVETYARNRAILLEALPQMGLGRIAPPDGAFYIYADASEFTDDS
LALCEALLRDTGVATAPGLDFDPVNGKRFIRFSFAVSTPLIEEAVRRIGPWFAARRAVSPAQAPS

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI4507369, Length=374, Percent_Identity=26.2032085561497, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI95147551, Length=394, Percent_Identity=21.0659898477157, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI169881279, Length=394, Percent_Identity=21.0659898477157, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI56713256, Length=328, Percent_Identity=23.1707317073171, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI56713254, Length=328, Percent_Identity=23.1707317073171, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI169881281, Length=278, Percent_Identity=21.2230215827338, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI1786816, Length=323, Percent_Identity=27.5541795665635, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1788722, Length=369, Percent_Identity=24.390243902439, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788627, Length=341, Percent_Identity=25.5131964809384, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1787909, Length=337, Percent_Identity=22.8486646884273, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787710, Length=341, Percent_Identity=23.1671554252199, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17567663, Length=370, Percent_Identity=26.2162162162162, Blast_Score=88, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71994476, Length=346, Percent_Identity=22.5433526011561, Blast_Score=76, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71994472, Length=346, Percent_Identity=22.5433526011561, Blast_Score=75, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6322401, Length=386, Percent_Identity=20.4663212435233, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI18859735, Length=311, Percent_Identity=24.1157556270096, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI28573069, Length=332, Percent_Identity=21.6867469879518, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24646114, Length=332, Percent_Identity=21.6867469879518, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI28573067, Length=332, Percent_Identity=21.6867469879518, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI28573065, Length=332, Percent_Identity=21.6867469879518, Blast_Score=73, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001176
- InterPro:   IPR004839
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.1 [H]

Molecular weight: Translated: 41416; Mature: 41416

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS00105 AA_TRANSFER_CLASS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAQVEPFHAIAISRLAHDLEAAGQSVIHMEFGQPSTGAPAEAIALAHEVLDNEAMGYWE
CCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCHHCCHHH
SVPLKERIARSYAENHGVKVEREQVILTCGASPAFVMALSCLFRPGARIALARPGYVAYR
CCCHHHHHHHHHHHHCCCEEEECEEEEEECCCHHHHHHHHHHHCCCCEEEEECCCHHHHH
NSLKAMYLEPVEMECGPAERFQVTAAAVDALDPVPDGLIVASPANPTGTIIEPGELAAIA
HCCCEEEECCCCCCCCCCHHEEEHHHHHHHCCCCCCCEEEECCCCCCCCEECCHHHHHHH
EVCCRKGIRVISDEIYHGLSYGKAAASMLEYLPDAVIVNSFSKYFSMAGWRLGWLVVPPS
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEEECHH
LIDAARARMGSLFLTPPVLAQKAGLKAFDCRAELDGHVETYARNRAILLEALPQMGLGRI
HHHHHHHHHCCEEECCHHHHHHCCCCEEECHHHCCCHHHHHHCCCHHHHHHHHCCCCCCC
APPDGAFYIYADASEFTDDSLALCEALLRDTGVATAPGLDFDPVNGKRFIRFSFAVSTPL
CCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCHH
IEEAVRRIGPWFAARRAVSPAQAPS
HHHHHHHHCHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MIAQVEPFHAIAISRLAHDLEAAGQSVIHMEFGQPSTGAPAEAIALAHEVLDNEAMGYWE
CCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCHHCCHHH
SVPLKERIARSYAENHGVKVEREQVILTCGASPAFVMALSCLFRPGARIALARPGYVAYR
CCCHHHHHHHHHHHHCCCEEEECEEEEEECCCHHHHHHHHHHHCCCCEEEEECCCHHHHH
NSLKAMYLEPVEMECGPAERFQVTAAAVDALDPVPDGLIVASPANPTGTIIEPGELAAIA
HCCCEEEECCCCCCCCCCHHEEEHHHHHHHCCCCCCCEEEECCCCCCCCEECCHHHHHHH
EVCCRKGIRVISDEIYHGLSYGKAAASMLEYLPDAVIVNSFSKYFSMAGWRLGWLVVPPS
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEEECHH
LIDAARARMGSLFLTPPVLAQKAGLKAFDCRAELDGHVETYARNRAILLEALPQMGLGRI
HHHHHHHHHCCEEECCHHHHHHCCCCEEECHHHCCCHHHHHHCCCHHHHHHHHCCCCCCC
APPDGAFYIYADASEFTDDSLALCEALLRDTGVATAPGLDFDPVNGKRFIRFSFAVSTPL
CCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCHH
IEEAVRRIGPWFAARRAVSPAQAPS
HHHHHHHHCHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]