| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200518
Identifier: 87200518
GI number: 87200518
Start: 2707680
End: 2709611
Strand: Reverse
Name: 87200518
Synonym: Saro_2505
Alternate gene names: NA
Gene position: 2709611-2707680 (Counterclockwise)
Preceding gene: 87200519
Following gene: 87200517
Centisome position: 76.08
GC content: 67.49
Gene sequence:
>1932_bases ATGACCAGCCTTGCGACGGAACTGCCGCTCCCCGGCCTGCCATCGTTCAGGGGCATGACCGGCCCCGCAACGGCGATGAG GCAACGCCGAACCTGGTTGATCTATCTTGGGCTGGTTGCCTTCGGCGCATTGCCGTGGGCGATTGGCGCTTCGCCTGCGT GGTGCGCGTTCGGTCTGGGGCTGTGGGTGCCCGGCGGCGGCTTCATCGCGCTTGGCGGTTGGTGGAGTCTGCTGGTCTTG CCTGCGGCGATCCTGTTCGTGGCCTCGCTGGTGGCCTGGTTCTGGGCGGGGGCGGTGGTGGCGCCGGTGCTGGTCTGGCT TGGCGCTGCGCTGCTGGCGGCTGGCATGGCCACCGATGCACCGTGGCCGGGGAGCCCGGTGGTCGTCGCCGCGCTCGTGG TCGCGGTGGGCTTTGCCTTTGCCCGCGCCAACGGCAAGGCGCGTGCGCGCGGCGCGGCGCGAGCACTTGTGAGGCAGGCA TTCCTGCCCGCATCCTACGCCGAAGTGGCCGCACAGGCGAGGGGCCGGCCCGACGATGCACGCCGCGAACTCGATGCCGA TCAACTGGCCGGCCTGCGCTACCTGCTCGACCGTGCCCTGCAGCCGGTCGGCAGCTTTGACGGCTTTACCGTGATCGACC AGTTCCAGCCTGCCGCATTGCGCTACCAGATCAACCACATGGGCTTCGCCCTGGGGATTGCGCAGCGCGCCTATCTACCG GCGTTCCGGGGCTACATGGGGCTGGCGCAGCGCAACCTGATCGAGAAGTACCTTGAGCGGAAGGTCTGGGATTACTGGGT GCTGGAGAGCTGCTGGGGGCATCTCAACTTCACCGACTGGAACCCGGCGGCGCGCGACAACATCATGCTAACCGGCTGGT TTGCCGCGCATGTAGGCCAGTACATGCTCGCAACGGGCGACCGGCGGTACATGGAGCCCGGGAGCCTGACGTTCCGGCTG AACCGGCGGCAGAGCTGGGCGCACGATTTCACCACCATCGTCGGTTCGGTGAGCGACAACTACGCAAGGGCGGATTTCGG CCTCTTTGCCTGCGAGCCGAACTGGATCTACCCGATCTGCAACCACTACGGCATGCTGGCGCTGGTCACGCACGACGCCC TGACCGGATCCAAGCTTGTCGACCGCCACCTGCCCGGATGGATACGCGGCCTCGATACCGAGTTCACCGACGCCTCCGGC TCCATCGTCGGGCTGCGTTCGCAGTTCACCGGCCTGCCGGTGCCCTTTCCCGTGGGTGAGGCAGGCTATTCGCACTTCGC CAATTGCTTCATGCCCGACCGGGCGCGGCAGTTCTGGGCCATTGCGCGCCGCGAGATCGAACCGCTCATCGTGGCGGAGG ATGACGGTGGCAGCCGTATCGCCATGCCGGGGGCAGGCCTCGATGCCGGCCACTACAAGCCAGGCCACGTCGGGGCCTAT GCGAGCTACCTGGTGGCGGCACGCGAATTCGGCGACCGCGAGCGGGCCGATGCCGCGCTACGCGGGCTGGAGCGCGACTG CAGGCCGGACCGGTCGGATGGCGTGTTGCGCTATCTCACGGGTTCGAACATTTCCAACGCGACCGCTATCATGGGGCTGC TGATGGACACCGGCGACTTCCGTCGCTCGTTCACCGAGCCTCTGCCCGAGACGCGGCTTGCCGGACCGATGATCGAGAGC ATGGACTATCCCGATGTCCTCGTGGCCCGCGCGTGGAGCGATGGCAGCCGCCTCGAGGCCGTCCTTCTTCCCGGCCGTGG TGCCTGCCGAAAGGCCGTGCCGTTGTCGCAACTCGTGCCCGGCGCGCGCTATCGCGTCGTGGGCGCGCAGCAGGCCGAGG TGACAGCTTCGCCGGAGGGGGAAGCAGTGCTTGACGTCGTGCTCGACGGCCGGATCGAGATCATCGTGGAACCCTTGGAG AATCTGGCATGA
Upstream 100 bases:
>100_bases GGCCGGCGACAGCCGCACCGCTGGTGGATGATGCCCCGGCCACGGGCTATGCCGCAGCGTTCCATGCCATGCTGTGCGGT CCTGGTCGGGAGGCGCGTCG
Downstream 100 bases:
>100_bases CCACCTGCTGTGCCGCTGTCGCCCGTGGGGCGAACCAGCCCTTCACCATCGAGCAACTGACGGTGGACGGACCGCGTGCG GGCGAGGTGCTGGTACAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 643; Mature: 642
Protein sequence:
>643_residues MTSLATELPLPGLPSFRGMTGPATAMRQRRTWLIYLGLVAFGALPWAIGASPAWCAFGLGLWVPGGGFIALGGWWSLLVL PAAILFVASLVAWFWAGAVVAPVLVWLGAALLAAGMATDAPWPGSPVVVAALVVAVGFAFARANGKARARGAARALVRQA FLPASYAEVAAQARGRPDDARRELDADQLAGLRYLLDRALQPVGSFDGFTVIDQFQPAALRYQINHMGFALGIAQRAYLP AFRGYMGLAQRNLIEKYLERKVWDYWVLESCWGHLNFTDWNPAARDNIMLTGWFAAHVGQYMLATGDRRYMEPGSLTFRL NRRQSWAHDFTTIVGSVSDNYARADFGLFACEPNWIYPICNHYGMLALVTHDALTGSKLVDRHLPGWIRGLDTEFTDASG SIVGLRSQFTGLPVPFPVGEAGYSHFANCFMPDRARQFWAIARREIEPLIVAEDDGGSRIAMPGAGLDAGHYKPGHVGAY ASYLVAAREFGDRERADAALRGLERDCRPDRSDGVLRYLTGSNISNATAIMGLLMDTGDFRRSFTEPLPETRLAGPMIES MDYPDVLVARAWSDGSRLEAVLLPGRGACRKAVPLSQLVPGARYRVVGAQQAEVTASPEGEAVLDVVLDGRIEIIVEPLE NLA
Sequences:
>Translated_643_residues MTSLATELPLPGLPSFRGMTGPATAMRQRRTWLIYLGLVAFGALPWAIGASPAWCAFGLGLWVPGGGFIALGGWWSLLVL PAAILFVASLVAWFWAGAVVAPVLVWLGAALLAAGMATDAPWPGSPVVVAALVVAVGFAFARANGKARARGAARALVRQA FLPASYAEVAAQARGRPDDARRELDADQLAGLRYLLDRALQPVGSFDGFTVIDQFQPAALRYQINHMGFALGIAQRAYLP AFRGYMGLAQRNLIEKYLERKVWDYWVLESCWGHLNFTDWNPAARDNIMLTGWFAAHVGQYMLATGDRRYMEPGSLTFRL NRRQSWAHDFTTIVGSVSDNYARADFGLFACEPNWIYPICNHYGMLALVTHDALTGSKLVDRHLPGWIRGLDTEFTDASG SIVGLRSQFTGLPVPFPVGEAGYSHFANCFMPDRARQFWAIARREIEPLIVAEDDGGSRIAMPGAGLDAGHYKPGHVGAY ASYLVAAREFGDRERADAALRGLERDCRPDRSDGVLRYLTGSNISNATAIMGLLMDTGDFRRSFTEPLPETRLAGPMIES MDYPDVLVARAWSDGSRLEAVLLPGRGACRKAVPLSQLVPGARYRVVGAQQAEVTASPEGEAVLDVVLDGRIEIIVEPLE NLA >Mature_642_residues TSLATELPLPGLPSFRGMTGPATAMRQRRTWLIYLGLVAFGALPWAIGASPAWCAFGLGLWVPGGGFIALGGWWSLLVLP AAILFVASLVAWFWAGAVVAPVLVWLGAALLAAGMATDAPWPGSPVVVAALVVAVGFAFARANGKARARGAARALVRQAF LPASYAEVAAQARGRPDDARRELDADQLAGLRYLLDRALQPVGSFDGFTVIDQFQPAALRYQINHMGFALGIAQRAYLPA FRGYMGLAQRNLIEKYLERKVWDYWVLESCWGHLNFTDWNPAARDNIMLTGWFAAHVGQYMLATGDRRYMEPGSLTFRLN RRQSWAHDFTTIVGSVSDNYARADFGLFACEPNWIYPICNHYGMLALVTHDALTGSKLVDRHLPGWIRGLDTEFTDASGS IVGLRSQFTGLPVPFPVGEAGYSHFANCFMPDRARQFWAIARREIEPLIVAEDDGGSRIAMPGAGLDAGHYKPGHVGAYA SYLVAAREFGDRERADAALRGLERDCRPDRSDGVLRYLTGSNISNATAIMGLLMDTGDFRRSFTEPLPETRLAGPMIESM DYPDVLVARAWSDGSRLEAVLLPGRGACRKAVPLSQLVPGARYRVVGAQQAEVTASPEGEAVLDVVLDGRIEIIVEPLEN LA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69944; Mature: 69813
Theoretical pI: Translated: 7.04; Mature: 7.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSLATELPLPGLPSFRGMTGPATAMRQRRTWLIYLGLVAFGALPWAIGASPAWCAFGLG CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCHHHHCCCCHHHHHHCCC LWVPGGGFIALGGWWSLLVLPAAILFVASLVAWFWAGAVVAPVLVWLGAALLAAGMATDA EEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC PWPGSPVVVAALVVAVGFAFARANGKARARGAARALVRQAFLPASYAEVAAQARGRPDDA CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHH RRELDADQLAGLRYLLDRALQPVGSFDGFTVIDQFQPAALRYQINHMGFALGIAQRAYLP HHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHEEEHHHHHHHHHHHHHHHHH AFRGYMGLAQRNLIEKYLERKVWDYWVLESCWGHLNFTDWNPAARDNIMLTGWFAAHVGQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHHHH YMLATGDRRYMEPGSLTFRLNRRQSWAHDFTTIVGSVSDNYARADFGLFACEPNWIYPIC HHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHH NHYGMLALVTHDALTGSKLVDRHLPGWIRGLDTEFTDASGSIVGLRSQFTGLPVPFPVGE CCCCEEEEEECCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCC AGYSHFANCFMPDRARQFWAIARREIEPLIVAEDDGGSRIAMPGAGLDAGHYKPGHVGAY HHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCHHHH ASYLVAAREFGDRERADAALRGLERDCRPDRSDGVLRYLTGSNISNATAIMGLLMDTGDF HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCHH RRSFTEPLPETRLAGPMIESMDYPDVLVARAWSDGSRLEAVLLPGRGACRKAVPLSQLVP HHHHHCCCCCHHHCCCHHHCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCHHHHCC GARYRVVGAQQAEVTASPEGEAVLDVVLDGRIEIIVEPLENLA CCCEEEEECCCCEEECCCCCCEEEEEEECCCEEEEECCHHHCC >Mature Secondary Structure TSLATELPLPGLPSFRGMTGPATAMRQRRTWLIYLGLVAFGALPWAIGASPAWCAFGLG CCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCHHHHCCCCHHHHHHCCC LWVPGGGFIALGGWWSLLVLPAAILFVASLVAWFWAGAVVAPVLVWLGAALLAAGMATDA EEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC PWPGSPVVVAALVVAVGFAFARANGKARARGAARALVRQAFLPASYAEVAAQARGRPDDA CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHH RRELDADQLAGLRYLLDRALQPVGSFDGFTVIDQFQPAALRYQINHMGFALGIAQRAYLP HHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHEEEHHHHHHHHHHHHHHHHH AFRGYMGLAQRNLIEKYLERKVWDYWVLESCWGHLNFTDWNPAARDNIMLTGWFAAHVGQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHHHH YMLATGDRRYMEPGSLTFRLNRRQSWAHDFTTIVGSVSDNYARADFGLFACEPNWIYPIC HHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHH NHYGMLALVTHDALTGSKLVDRHLPGWIRGLDTEFTDASGSIVGLRSQFTGLPVPFPVGE CCCCEEEEEECCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCC AGYSHFANCFMPDRARQFWAIARREIEPLIVAEDDGGSRIAMPGAGLDAGHYKPGHVGAY HHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCHHHH ASYLVAAREFGDRERADAALRGLERDCRPDRSDGVLRYLTGSNISNATAIMGLLMDTGDF HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCHH RRSFTEPLPETRLAGPMIESMDYPDVLVARAWSDGSRLEAVLLPGRGACRKAVPLSQLVP HHHHHCCCCCHHHCCCHHHCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCHHHHCC GARYRVVGAQQAEVTASPEGEAVLDVVLDGRIEIIVEPLENLA CCCEEEEECCCCEEECCCCCCEEEEEEECCCEEEEECCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA