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The map label for this gene is yfdE [H]

Identifier: 87200514

GI number: 87200514

Start: 2702379

End: 2703551

Strand: Reverse

Name: yfdE [H]

Synonym: Saro_2501

Alternate gene names: 87200514

Gene position: 2703551-2702379 (Counterclockwise)

Preceding gene: 87200515

Following gene: 87200512

Centisome position: 75.91

GC content: 64.54

Gene sequence:

>1173_bases
ATGAGCGACAAGCCCGTAATGCTCGAGGGCATCCGCGTGGTGGACCTGACCACGGTCGTTTTCGGCCCCTATGCGACGCA
GATCCTGGCGGATCTCGGCGCGGATGTGATCAAGGTGGAATCGCCCGGGATCGGCGATGCCTTCCGCTGGTCGGCAAAGC
CTGCCGTCACGCCAGGCATGGCGCCAGCGTGGATGGCGCTCAACCGTGGCAAGAAGTCGGCGGCGCTCGATCTCAAGGCT
GAAGCGGACCGTTCGGTCATGCTTGACCTGCTGCGCGAGGCGGACGTTTTCGTCGTTAACGTCCGGGGCAAGGCGCTCGA
GCGGATCGGGCTCGATTACGACAGCCTCAAGGCCATCAATCCTTCGCTGATCTACGTTCACTGTGTCGGCTTCGGGCAGG
ATGGGCCCTATGCCGATCTCCAGGCCTATGATGACGTGATCCAGGCGGCGACCGGCACGACCACGCTCCTGCCGCGCGTC
GACGGCAATCCGCACCCGCGCTATCTGCCCTCGCTCATCGCTGACAAGGTGGCGGGCCTGCATGCGACCTACGCGGCCTT
GGCGGCGATCGTCCACAAGCAGCGAACGGGCGAGGGGCAACTGGTGGAAGTGCCGATGTTCGAGGCCTTCTCCAGCTTCA
TGCTGCTCGAACACCTCGGCGGCCTGACTTTCGACCCGCCGAACGCGCCCGAAGGCTATTTCCGCCAGATCGATCCGGAT
CGCCAGCCGTTCCCGACCGCTGACGGCTACGTAAGCATCGTCGCCTATACCGACGATGCCTGGCAACGCATCTTCACCCT
GCTGGACCAGCCCGACTTCCTGAAGCAGGACCACCTTGCCACGCCGCAGCAGCGATATGTTGCACAGGCCGAACTCTATC
AGGCGATAGCGCGGTTCACGCCGTTGCTTACCACGTCGGAGATCGTCAGCCGATGCCATGCAGTGCAGATACCGGCCCAG
GCGGTGCGCGACCTTGCCGATGTGATGAAGGACCCGCACCTGCAGGCGGTCAACTTCTTCAGGCGGCGTGTCCACCCGGT
CGAGGGCGCCTACTTCGAGCAGGCCGCGCCAGTGAAATTCGGCGCCGCCGAAGACGGGGAACGCCTGTCCCCACCACTGG
GCGGCGAACATACCGAGGAACTGCGCGCACGCGGCTGGAACGCGTTCGGATGA

Upstream 100 bases:

>100_bases
AACGGTCACCGCCATGACGGAGGTCGATCCTCTCGGACGCGAGGTTTCCGTCACGCCATCCGAAAAGCGCAACAGCTTCA
CTTTCGCCTGAGGATCAAGC

Downstream 100 bases:

>100_bases
CGCCGGACGAGGGAGCGGCGTGGGCCGCTCCCTTGCGCGTGCCTCTTGCGCGCGGTTGCCGGCGATCAGATGATCAGGAA
GTCGGCATGCGTCAGCAGCG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 389

Protein sequence:

>390_residues
MSDKPVMLEGIRVVDLTTVVFGPYATQILADLGADVIKVESPGIGDAFRWSAKPAVTPGMAPAWMALNRGKKSAALDLKA
EADRSVMLDLLREADVFVVNVRGKALERIGLDYDSLKAINPSLIYVHCVGFGQDGPYADLQAYDDVIQAATGTTTLLPRV
DGNPHPRYLPSLIADKVAGLHATYAALAAIVHKQRTGEGQLVEVPMFEAFSSFMLLEHLGGLTFDPPNAPEGYFRQIDPD
RQPFPTADGYVSIVAYTDDAWQRIFTLLDQPDFLKQDHLATPQQRYVAQAELYQAIARFTPLLTTSEIVSRCHAVQIPAQ
AVRDLADVMKDPHLQAVNFFRRRVHPVEGAYFEQAAPVKFGAAEDGERLSPPLGGEHTEELRARGWNAFG

Sequences:

>Translated_390_residues
MSDKPVMLEGIRVVDLTTVVFGPYATQILADLGADVIKVESPGIGDAFRWSAKPAVTPGMAPAWMALNRGKKSAALDLKA
EADRSVMLDLLREADVFVVNVRGKALERIGLDYDSLKAINPSLIYVHCVGFGQDGPYADLQAYDDVIQAATGTTTLLPRV
DGNPHPRYLPSLIADKVAGLHATYAALAAIVHKQRTGEGQLVEVPMFEAFSSFMLLEHLGGLTFDPPNAPEGYFRQIDPD
RQPFPTADGYVSIVAYTDDAWQRIFTLLDQPDFLKQDHLATPQQRYVAQAELYQAIARFTPLLTTSEIVSRCHAVQIPAQ
AVRDLADVMKDPHLQAVNFFRRRVHPVEGAYFEQAAPVKFGAAEDGERLSPPLGGEHTEELRARGWNAFG
>Mature_389_residues
SDKPVMLEGIRVVDLTTVVFGPYATQILADLGADVIKVESPGIGDAFRWSAKPAVTPGMAPAWMALNRGKKSAALDLKAE
ADRSVMLDLLREADVFVVNVRGKALERIGLDYDSLKAINPSLIYVHCVGFGQDGPYADLQAYDDVIQAATGTTTLLPRVD
GNPHPRYLPSLIADKVAGLHATYAALAAIVHKQRTGEGQLVEVPMFEAFSSFMLLEHLGGLTFDPPNAPEGYFRQIDPDR
QPFPTADGYVSIVAYTDDAWQRIFTLLDQPDFLKQDHLATPQQRYVAQAELYQAIARFTPLLTTSEIVSRCHAVQIPAQA
VRDLADVMKDPHLQAVNFFRRRVHPVEGAYFEQAAPVKFGAAEDGERLSPPLGGEHTEELRARGWNAFG

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=378, Percent_Identity=29.1005291005291, Blast_Score=155, Evalue=4e-38,
Organism=Homo sapiens, GI300863124, Length=405, Percent_Identity=28.1481481481481, Blast_Score=147, Evalue=2e-35,
Organism=Homo sapiens, GI300863126, Length=376, Percent_Identity=27.1276595744681, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI13376042, Length=405, Percent_Identity=25.679012345679, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI266456254, Length=349, Percent_Identity=28.080229226361, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI266458397, Length=212, Percent_Identity=33.0188679245283, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI266458393, Length=212, Percent_Identity=33.0188679245283, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI42794625, Length=330, Percent_Identity=28.7878787878788, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI42822893, Length=145, Percent_Identity=33.7931034482759, Blast_Score=79, Evalue=8e-15,
Organism=Homo sapiens, GI266458395, Length=145, Percent_Identity=33.7931034482759, Blast_Score=79, Evalue=1e-14,
Organism=Escherichia coli, GI87082093, Length=361, Percent_Identity=30.4709141274238, Blast_Score=161, Evalue=7e-41,
Organism=Escherichia coli, GI1788717, Length=399, Percent_Identity=29.3233082706767, Blast_Score=154, Evalue=9e-39,
Organism=Escherichia coli, GI1786222, Length=225, Percent_Identity=31.1111111111111, Blast_Score=83, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI32564160, Length=274, Percent_Identity=29.5620437956204, Blast_Score=82, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI115535051, Length=207, Percent_Identity=30.9178743961353, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24648431, Length=381, Percent_Identity=30.9711286089239, Blast_Score=163, Evalue=2e-40,
Organism=Drosophila melanogaster, GI24585488, Length=205, Percent_Identity=27.8048780487805, Blast_Score=83, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42781; Mature: 42650

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDKPVMLEGIRVVDLTTVVFGPYATQILADLGADVIKVESPGIGDAFRWSAKPAVTPGM
CCCCCEEECCEEEEEEHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC
APAWMALNRGKKSAALDLKAEADRSVMLDLLREADVFVVNVRGKALERIGLDYDSLKAIN
CHHHHHHHCCCCCCEEEEHHHCCHHHHHHHHHCCCEEEEECCCHHHHHHCCCHHHHHCCC
PSLIYVHCVGFGQDGPYADLQAYDDVIQAATGTTTLLPRVDGNPHPRYLPSLIADKVAGL
CCEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
HATYAALAAIVHKQRTGEGQLVEVPMFEAFSSFMLLEHLGGLTFDPPNAPEGYFRQIDPD
HHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCC
RQPFPTADGYVSIVAYTDDAWQRIFTLLDQPDFLKQDHLATPQQRYVAQAELYQAIARFT
CCCCCCCCCEEEEEEECCHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHC
PLLTTSEIVSRCHAVQIPAQAVRDLADVMKDPHLQAVNFFRRRVHPVEGAYFEQAAPVKF
CCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHCCCCCEEC
GAAEDGERLSPPLGGEHTEELRARGWNAFG
CCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure 
SDKPVMLEGIRVVDLTTVVFGPYATQILADLGADVIKVESPGIGDAFRWSAKPAVTPGM
CCCCEEECCEEEEEEHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC
APAWMALNRGKKSAALDLKAEADRSVMLDLLREADVFVVNVRGKALERIGLDYDSLKAIN
CHHHHHHHCCCCCCEEEEHHHCCHHHHHHHHHCCCEEEEECCCHHHHHHCCCHHHHHCCC
PSLIYVHCVGFGQDGPYADLQAYDDVIQAATGTTTLLPRVDGNPHPRYLPSLIADKVAGL
CCEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
HATYAALAAIVHKQRTGEGQLVEVPMFEAFSSFMLLEHLGGLTFDPPNAPEGYFRQIDPD
HHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCC
RQPFPTADGYVSIVAYTDDAWQRIFTLLDQPDFLKQDHLATPQQRYVAQAELYQAIARFT
CCCCCCCCCEEEEEEECCHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHC
PLLTTSEIVSRCHAVQIPAQAVRDLADVMKDPHLQAVNFFRRRVHPVEGAYFEQAAPVKF
CCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHCCCCCEEC
GAAEDGERLSPPLGGEHTEELRARGWNAFG
CCCCCCCCCCCCCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]