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The map label for this gene is rbfA

Identifier: 87200501

GI number: 87200501

Start: 2688951

End: 2689358

Strand: Reverse

Name: rbfA

Synonym: Saro_2488

Alternate gene names: 87200501

Gene position: 2689358-2688951 (Counterclockwise)

Preceding gene: 87200502

Following gene: 87200500

Centisome position: 75.51

GC content: 64.46

Gene sequence:

>408_bases
GTGGCCAAGCAACAGACGTCCCCCGAAACCCGCTCCGTCCGCCTGCTCAAGGTGGGTGAACAGGTGCGCCATATCCTGTC
CGAGCTTCTGGCCCGGCAGGAGGTTCACGACGATGTGCTGTCGGCGCATACCGTTTCGGTCACCGAAGTGCGCATGTCGC
CCGACCTGCGTCACGCCACCGTCTTCATCAAGGCGCTGCTCGGCGAGGACGAGGACCTGGTACTCAAGGCCTTGCGCACC
AATACGGCTTTCTTCCAGCGCGAGGTGGCGCAGCGCCTGCGCCTGAAATATGCGGCGCGGCTGAAGTTCCTGGCCGACGA
GAGCTTCGACGTCGCCAGCAAGATCGAGACGCTGCTCGCCGATCCGAAGGTCCAGCGCGACCTCAGGGACCAAGAGTCCG
ACGGCTGA

Upstream 100 bases:

>100_bases
GCAAGTTGTCGAGCGCCTTCCTCGAACGGCGGCTTGGCTGTCGGGGCACCGCGCGCAATGTGCGCTCGATCGCCCGTATC
CTTGCGAAGATGAGTTAGAC

Downstream 100 bases:

>100_bases
GGGCGCGCCGGGTGGCCAAGCTCTATTTCTACTATGCCAGCATGAACGCCGGCAAATCGACCAACCTGCTCCAGGCGGAT
TTCAACTACCGGGAGCGTGG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MAKQQTSPETRSVRLLKVGEQVRHILSELLARQEVHDDVLSAHTVSVTEVRMSPDLRHATVFIKALLGEDEDLVLKALRT
NTAFFQREVAQRLRLKYAARLKFLADESFDVASKIETLLADPKVQRDLRDQESDG

Sequences:

>Translated_135_residues
MAKQQTSPETRSVRLLKVGEQVRHILSELLARQEVHDDVLSAHTVSVTEVRMSPDLRHATVFIKALLGEDEDLVLKALRT
NTAFFQREVAQRLRLKYAARLKFLADESFDVASKIETLLADPKVQRDLRDQESDG
>Mature_134_residues
AKQQTSPETRSVRLLKVGEQVRHILSELLARQEVHDDVLSAHTVSVTEVRMSPDLRHATVFIKALLGEDEDLVLKALRTN
TAFFQREVAQRLRLKYAARLKFLADESFDVASKIETLLADPKVQRDLRDQESDG

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_NOVAD (Q2G5E9)

Other databases:

- EMBL:   CP000248
- RefSeq:   YP_497758.1
- STRING:   Q2G5E9
- GeneID:   3916808
- GenomeReviews:   CP000248_GR
- KEGG:   nar:Saro_2488
- NMPDR:   fig|48935.1.peg.1939
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   LRQMKYM
- ProtClustDB:   PRK00521
- BioCyc:   NARO279238:SARO_2488-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 15367; Mature: 15236

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQQTSPETRSVRLLKVGEQVRHILSELLARQEVHDDVLSAHTVSVTEVRMSPDLRHAT
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHH
VFIKALLGEDEDLVLKALRTNTAFFQREVAQRLRLKYAARLKFLADESFDVASKIETLLA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
DPKVQRDLRDQESDG
CHHHHHHHHCCCCCC
>Mature Secondary Structure 
AKQQTSPETRSVRLLKVGEQVRHILSELLARQEVHDDVLSAHTVSVTEVRMSPDLRHAT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHH
VFIKALLGEDEDLVLKALRTNTAFFQREVAQRLRLKYAARLKFLADESFDVASKIETLLA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
DPKVQRDLRDQESDG
CHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA