| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200488
Identifier: 87200488
GI number: 87200488
Start: 2674487
End: 2677045
Strand: Reverse
Name: 87200488
Synonym: Saro_2475
Alternate gene names: NA
Gene position: 2677045-2674487 (Counterclockwise)
Preceding gene: 87200489
Following gene: 87200481
Centisome position: 75.16
GC content: 67.8
Gene sequence:
>2559_bases ATGACCCTCGCGACCAGAAGCCTCATCAAGAACCTCTCCTCCGCACTGGGCGCCCAGGCCGAGCGGGAGCAATTGATTGC CCTGATTTCGATCGCGACGCAGACCGTCGCACCGCTCTGGCCACTCGACAGTGCCATCGCCGTCAATCCACTGTCGGGCT TCGAGGAACAGCCGTTCGAGGAAGTGCTGCCCGAGGCCGCAGCCCTGTTCGGCGCAAGGCCCACGCTCTCGCTGAACGAA TGGCGCACGCTCATGGATGAAGGGCGCATCGACCAGGTTTCGCTGCGCAAGGCGGTGGTCAATGCGCTGGGCGGACCGGA TGAAGCGTTCGCATTGCTGGGGCCTGATCTCAACGCCTACAACCTGCTCGTCGCGCGGCTGCTCGACATGGAGGCAGAGG ACGTGCCCCCGGTGCGGCGCGCGCTGTCGCCCGGCATGGCCACCCTTGCGCGCTGGCTGGCCGCCTTCTTCGATCGCAAC GCCGCTTTGCGCCTCCCGGGGCGGGAACGTGGGCTCTATGCTTGTCTTTCAGAAGCGCTGCGCCACGATCCCGCGCTGCT GCGCGCCAGCAACGCCACCGGCCGCGCCTGGCTGGAAAACGCTCCGGCAGACCCGGTGGACATGCTGATCCTTGCCGCGC GCCGCGACGCCGTCGGGCCGGAGCGTCGTTTGCCCTGGCTGCGCGCCATGGTGGCGAGCCTGCCGGGCTGGGCAGCACAT TTGCGCTGGCGAAGCGAACATGCGGGACCTGCCACCAGCCTTGGCGCGCCTGCTTGCATGGCGGACCTCATGGCGCTGGT GGCGCTGGTGCAGGGCGTGGTGCAACCGGCACCGCGTGCCGTGCCTGATCCGGACTGCCCGGAAGATGTCGAGGCTGCAC TTTTGGTGCACTGCGGAGTGGCGCAGGACGCTCCGGCCAAGTGGCCGGAGGCTGGCCGGGCACGGCTGCGCGCCGTCGCA GCGCTGACCCACGCTCAACTCGGCCTGATCTTTCAGGAGGCCGCCGAGTCCAGCTTCCTTGGCCAACTGGCTCCACAGCT CGAGGGCGCCTCTGCCCGGCTGGCTGCGCCGCAGTCCACGCTTCGCCCTGAAGCGCAAGCGATCTTCTGCATCGACGTTC GCTCGGAACCGATGCGGCGGGCGCTGGAAACGCAGGGGCGGTTCGAGACACTCGGCTATGCAGGGTTCTTCGGCCTGCCG ATCGCCATCAACCCTGCCTGCGCTGCGCCTGCGCGCAACCAGTTGCCGGTACTGCTGTCGCCCTCGCACGTGGTGCCCGA ACGCGCCATGCCGGGGCGTGAGGCCGAGGCGACGGCCATGCTGGCCCGTCATGCTGCGCTTGGCGATGCCCAGGCGATGC TCGATACGACCAAGAGCGGCGCGATCGGCTTTGCCGCGGCGGAAGCCGCCGGACCTGTCGCTGCGGTGGCCATGCTTGCT CGCACTCTCGCCCCCCGGTTGACCCATCGGTTGCGCCAGCGTTTGATCGGGGAGCGCGGGCATGTGCTCGCCCCGGCGGC GTGCAACGATCAAGATCACGAACGTCATGACGGGCAGGGTGAAGGTATTCCGCTGGCGCAGCGCGTGGCCTATGCGCGGG GTATGTTCGCGTTGACCGGACTTTCGCCGCAGACGGCGCGGCTGGTGGCGCTGGTGGGGCATGGCGGCTGCACCACCAAC AATGCCTTTGCAGCCAGCCTCGATTGCGGAGCTTGCGGCGGGCATCCCGGCGGGCCAAATGCGCGGCTCATGGCGGCTAT CCTCAACGATCCCGCCGTGCGGAAGGGCCTGGCTGCAAAGGGCGTGGACTTGCCGCATGATACCTGGTTCATCGCCGCAC AGCACGACACCACGCGCGACGAGGTGGAAATCTTCGACCGCCATCTCGTGCCCGCCAGCCATGTGGCGGATCTTGCCCGG TTCGAGCGGGCACTCTCCTGCGCAGGGGCGCAGAGTCGCGATGAACGCGCGGCGCGGCTGGACCGGACGGCCGACGACCT GCTGACGGGCGCTGCACACTGGGGCGAAGTGCGTCCCGAATGGGGCCTTTCGGGCAATGCCGCCTTCATCGTTGGGCCGC GCGCGCTGACGCGGGAGGTCGATCTGGGCGGCAACGCCTTCCTTCACAGCTACGATTGGAAGAAGGATGACGATGGCAGC GCGCTCACCGGGATCATGACCGCGCCGATGATCGTGGCGCAGTGGATCAACTGCCAGTACCTGTTCTCGACCATCGACAA CGAGATTTTCGGCGCGGGCGACAAGACCACGCAGAATGTGGTCGGCGGCTTCGGCGTGGTGCAGGGGAGCGGCGGAGACC TTTGCACTGGCCTGCCGCGCCAATCGCTGTTCCGCGACGATGGCACCCCGTACCACACACCGCGCCGCCTCGCGGTGATC GTGCATGCGCCGCTGCAACGGGTACAGGACATCGTGCTGCGCCACGACGCGGTGGGCCGTCTCGTGGAAAATGGCTGGGT CAATCTGGTTGTGATCGACCCGTGGAAGCACAAGGCCCATCACTGGGTACGCGGCGATTGGGCCGTGCGACCATGCTGA
Upstream 100 bases:
>100_bases GCGAGCGCAACCTGCCACCAGCGCTGTTCGCCCGCCTGTTCCATGCCGGAAATCTCTCGGCCTGACCTCTGCAATTTCCA GCTCTCAAGGACGCCATGCC
Downstream 100 bases:
>100_bases TGCTCGCAGGCGCGTAATCCCCAGCCGGCGGTGCCTGTCGTGGGCACCGCAGCGCCAATCCGAATTTGCGCAAGCTTCAG GGCCGCACCACACACCTGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 852; Mature: 851
Protein sequence:
>852_residues MTLATRSLIKNLSSALGAQAEREQLIALISIATQTVAPLWPLDSAIAVNPLSGFEEQPFEEVLPEAAALFGARPTLSLNE WRTLMDEGRIDQVSLRKAVVNALGGPDEAFALLGPDLNAYNLLVARLLDMEAEDVPPVRRALSPGMATLARWLAAFFDRN AALRLPGRERGLYACLSEALRHDPALLRASNATGRAWLENAPADPVDMLILAARRDAVGPERRLPWLRAMVASLPGWAAH LRWRSEHAGPATSLGAPACMADLMALVALVQGVVQPAPRAVPDPDCPEDVEAALLVHCGVAQDAPAKWPEAGRARLRAVA ALTHAQLGLIFQEAAESSFLGQLAPQLEGASARLAAPQSTLRPEAQAIFCIDVRSEPMRRALETQGRFETLGYAGFFGLP IAINPACAAPARNQLPVLLSPSHVVPERAMPGREAEATAMLARHAALGDAQAMLDTTKSGAIGFAAAEAAGPVAAVAMLA RTLAPRLTHRLRQRLIGERGHVLAPAACNDQDHERHDGQGEGIPLAQRVAYARGMFALTGLSPQTARLVALVGHGGCTTN NAFAASLDCGACGGHPGGPNARLMAAILNDPAVRKGLAAKGVDLPHDTWFIAAQHDTTRDEVEIFDRHLVPASHVADLAR FERALSCAGAQSRDERAARLDRTADDLLTGAAHWGEVRPEWGLSGNAAFIVGPRALTREVDLGGNAFLHSYDWKKDDDGS ALTGIMTAPMIVAQWINCQYLFSTIDNEIFGAGDKTTQNVVGGFGVVQGSGGDLCTGLPRQSLFRDDGTPYHTPRRLAVI VHAPLQRVQDIVLRHDAVGRLVENGWVNLVVIDPWKHKAHHWVRGDWAVRPC
Sequences:
>Translated_852_residues MTLATRSLIKNLSSALGAQAEREQLIALISIATQTVAPLWPLDSAIAVNPLSGFEEQPFEEVLPEAAALFGARPTLSLNE WRTLMDEGRIDQVSLRKAVVNALGGPDEAFALLGPDLNAYNLLVARLLDMEAEDVPPVRRALSPGMATLARWLAAFFDRN AALRLPGRERGLYACLSEALRHDPALLRASNATGRAWLENAPADPVDMLILAARRDAVGPERRLPWLRAMVASLPGWAAH LRWRSEHAGPATSLGAPACMADLMALVALVQGVVQPAPRAVPDPDCPEDVEAALLVHCGVAQDAPAKWPEAGRARLRAVA ALTHAQLGLIFQEAAESSFLGQLAPQLEGASARLAAPQSTLRPEAQAIFCIDVRSEPMRRALETQGRFETLGYAGFFGLP IAINPACAAPARNQLPVLLSPSHVVPERAMPGREAEATAMLARHAALGDAQAMLDTTKSGAIGFAAAEAAGPVAAVAMLA RTLAPRLTHRLRQRLIGERGHVLAPAACNDQDHERHDGQGEGIPLAQRVAYARGMFALTGLSPQTARLVALVGHGGCTTN NAFAASLDCGACGGHPGGPNARLMAAILNDPAVRKGLAAKGVDLPHDTWFIAAQHDTTRDEVEIFDRHLVPASHVADLAR FERALSCAGAQSRDERAARLDRTADDLLTGAAHWGEVRPEWGLSGNAAFIVGPRALTREVDLGGNAFLHSYDWKKDDDGS ALTGIMTAPMIVAQWINCQYLFSTIDNEIFGAGDKTTQNVVGGFGVVQGSGGDLCTGLPRQSLFRDDGTPYHTPRRLAVI VHAPLQRVQDIVLRHDAVGRLVENGWVNLVVIDPWKHKAHHWVRGDWAVRPC >Mature_851_residues TLATRSLIKNLSSALGAQAEREQLIALISIATQTVAPLWPLDSAIAVNPLSGFEEQPFEEVLPEAAALFGARPTLSLNEW RTLMDEGRIDQVSLRKAVVNALGGPDEAFALLGPDLNAYNLLVARLLDMEAEDVPPVRRALSPGMATLARWLAAFFDRNA ALRLPGRERGLYACLSEALRHDPALLRASNATGRAWLENAPADPVDMLILAARRDAVGPERRLPWLRAMVASLPGWAAHL RWRSEHAGPATSLGAPACMADLMALVALVQGVVQPAPRAVPDPDCPEDVEAALLVHCGVAQDAPAKWPEAGRARLRAVAA LTHAQLGLIFQEAAESSFLGQLAPQLEGASARLAAPQSTLRPEAQAIFCIDVRSEPMRRALETQGRFETLGYAGFFGLPI AINPACAAPARNQLPVLLSPSHVVPERAMPGREAEATAMLARHAALGDAQAMLDTTKSGAIGFAAAEAAGPVAAVAMLAR TLAPRLTHRLRQRLIGERGHVLAPAACNDQDHERHDGQGEGIPLAQRVAYARGMFALTGLSPQTARLVALVGHGGCTTNN AFAASLDCGACGGHPGGPNARLMAAILNDPAVRKGLAAKGVDLPHDTWFIAAQHDTTRDEVEIFDRHLVPASHVADLARF ERALSCAGAQSRDERAARLDRTADDLLTGAAHWGEVRPEWGLSGNAAFIVGPRALTREVDLGGNAFLHSYDWKKDDDGSA LTGIMTAPMIVAQWINCQYLFSTIDNEIFGAGDKTTQNVVGGFGVVQGSGGDLCTGLPRQSLFRDDGTPYHTPRRLAVIV HAPLQRVQDIVLRHDAVGRLVENGWVNLVVIDPWKHKAHHWVRGDWAVRPC
Specific function: Unknown
COG id: COG3002
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0753 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y2475_NOVAD (Q2G5G2)
Other databases:
- EMBL: CP000248 - RefSeq: YP_497745.1 - STRING: Q2G5G2 - GeneID: 3916794 - GenomeReviews: CP000248_GR - KEGG: nar:Saro_2475 - eggNOG: COG3002 - HOGENOM: HBG520117 - OMA: LWQAELS - BioCyc: NARO279238:SARO_2475-MONOMER - HAMAP: MF_01871 - InterPro: IPR018752
Pfam domain/function: PF10070 DUF2309
EC number: NA
Molecular weight: Translated: 91123; Mature: 90992
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: PS00211 ABC_TRANSPORTER_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLATRSLIKNLSSALGAQAEREQLIALISIATQTVAPLWPLDSAIAVNPLSGFEEQPFE CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCHH EVLPEAAALFGARPTLSLNEWRTLMDEGRIDQVSLRKAVVNALGGPDEAFALLGPDLNAY HHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHH NLLVARLLDMEAEDVPPVRRALSPGMATLARWLAAFFDRNAALRLPGRERGLYACLSEAL HHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHH RHDPALLRASNATGRAWLENAPADPVDMLILAARRDAVGPERRLPWLRAMVASLPGWAAH HCCCCEEEECCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCHHCCHHHHHHHHHCCCHHHH LRWRSEHAGPATSLGAPACMADLMALVALVQGVVQPAPRAVPDPDCPEDVEAALLVHCGV HEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCC AQDAPAKWPEAGRARLRAVAALTHAQLGLIFQEAAESSFLGQLAPQLEGASARLAAPQST CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHH LRPEAQAIFCIDVRSEPMRRALETQGRFETLGYAGFFGLPIAINPACAAPARNQLPVLLS CCCCCCEEEEEECCCHHHHHHHHHCCCCHHCCCCCCCCCCEEECCCCCCCCCCCCCEEEC PSHVVPERAMPGREAEATAMLARHAALGDAQAMLDTTKSGAIGFAAAEAAGPVAAVAMLA CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEHHHHCCHHHHHHHHH RTLAPRLTHRLRQRLIGERGHVLAPAACNDQDHERHDGQGEGIPLAQRVAYARGMFALTG HHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHCCCCCCCCCHHHHHHHHHCCCEEEC LSPQTARLVALVGHGGCTTNNAFAASLDCGACGGHPGGPNARLMAAILNDPAVRKGLAAK CCCCCEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHCCHHHHHCCHHC GVDLPHDTWFIAAQHDTTRDEVEIFDRHLVPASHVADLARFERALSCAGAQSRDERAARL CCCCCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH DRTADDLLTGAAHWGEVRPEWGLSGNAAFIVGPRALTREVDLGGNAFLHSYDWKKDDDGS HCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHEEECCCCCEEEECCCCCCCCCCC ALTGIMTAPMIVAQWINCQYLFSTIDNEIFGAGDKTTQNVVGGFGVVQGSGGDLCTGLPR HHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCHHHHHHCCCEEEECCCCCCCCCCCH QSLFRDDGTPYHTPRRLAVIVHAPLQRVQDIVLRHDAVGRLVENGWVNLVVIDPWKHKAH HHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC HWVRGDWAVRPC CEECCCEEECCC >Mature Secondary Structure TLATRSLIKNLSSALGAQAEREQLIALISIATQTVAPLWPLDSAIAVNPLSGFEEQPFE CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCHH EVLPEAAALFGARPTLSLNEWRTLMDEGRIDQVSLRKAVVNALGGPDEAFALLGPDLNAY HHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHH NLLVARLLDMEAEDVPPVRRALSPGMATLARWLAAFFDRNAALRLPGRERGLYACLSEAL HHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHH RHDPALLRASNATGRAWLENAPADPVDMLILAARRDAVGPERRLPWLRAMVASLPGWAAH HCCCCEEEECCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCHHCCHHHHHHHHHCCCHHHH LRWRSEHAGPATSLGAPACMADLMALVALVQGVVQPAPRAVPDPDCPEDVEAALLVHCGV HEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCC AQDAPAKWPEAGRARLRAVAALTHAQLGLIFQEAAESSFLGQLAPQLEGASARLAAPQST CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHH LRPEAQAIFCIDVRSEPMRRALETQGRFETLGYAGFFGLPIAINPACAAPARNQLPVLLS CCCCCCEEEEEECCCHHHHHHHHHCCCCHHCCCCCCCCCCEEECCCCCCCCCCCCCEEEC PSHVVPERAMPGREAEATAMLARHAALGDAQAMLDTTKSGAIGFAAAEAAGPVAAVAMLA CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEHHHHCCHHHHHHHHH RTLAPRLTHRLRQRLIGERGHVLAPAACNDQDHERHDGQGEGIPLAQRVAYARGMFALTG HHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHCCCCCCCCCHHHHHHHHHCCCEEEC LSPQTARLVALVGHGGCTTNNAFAASLDCGACGGHPGGPNARLMAAILNDPAVRKGLAAK CCCCCEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHCCHHHHHCCHHC GVDLPHDTWFIAAQHDTTRDEVEIFDRHLVPASHVADLARFERALSCAGAQSRDERAARL CCCCCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH DRTADDLLTGAAHWGEVRPEWGLSGNAAFIVGPRALTREVDLGGNAFLHSYDWKKDDDGS HCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHEEECCCCCEEEECCCCCCCCCCC ALTGIMTAPMIVAQWINCQYLFSTIDNEIFGAGDKTTQNVVGGFGVVQGSGGDLCTGLPR HHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCHHHHHHCCCEEEECCCCCCCCCCCH QSLFRDDGTPYHTPRRLAVIVHAPLQRVQDIVLRHDAVGRLVENGWVNLVVIDPWKHKAH HHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC HWVRGDWAVRPC CEECCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA