| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200480
Identifier: 87200480
GI number: 87200480
Start: 2662662
End: 2663654
Strand: Direct
Name: 87200480
Synonym: Saro_2467
Alternate gene names: NA
Gene position: 2662662-2663654 (Clockwise)
Preceding gene: 87200479
Following gene: 87200482
Centisome position: 74.76
GC content: 59.32
Gene sequence:
>993_bases GTGCTTGGGCACGGTTGTGCTTCCATGCTAAATTGCCGCGTCAACCGTGATCGAGAGGGCGCGATGGCACTGGCGAAGCT ACCACAGCTTGAGAGCGTATTTCTGACTGATGCCGGCCTTGAGACCGACTTCATCTTTAACCGCGGCATCGATCTGCCAT ACTTCGCCTCAATCACCCTGCTTCAGTCGAGCGATGGAAAGATTGCCCTTGAAGAGTACTTTCGCGGCTTTCTCGAGCTC GCTCGGCGCATGCGATGCGGCCTGATTCTGGAAAGCGCCACATGGCGCGCAAGCCCGGACTGGGCTGAACCGCTCGGTTT GTCGCAGCAAGAGCTCGATACGTTGAACACGAGTGCAATCGCGATCCTGCGAGATCTGCGCGACGAATTTGGATCAACCA TGCCTGCAGTCGTGATCAGTGGGTGCCTTGGGCCGAGGGGCGACGGGTATGATCCTGGCAAGATCATGTCCGAGGAAGGA GCGGAAGCCTATCATCGCCACCAAGCTGAGGTACTCGCCTCGGCCGGCGTGGACCAGTTGACCGCGATCACGATGACTAA CGTGCCCGAGGCAATCGGGATTGCAAAGGCAGCGAAGAGTCTGGCGGTACCAGTCGCGATCAGCTTTACTGTCGAGACCG ACGGAAGGCTCCCCACCGGCGACAGGCTCTCTGATGCTCTGCGTGCGGTTGACCAGGCGACGGCTTCAACCCCGGCCTAT TACATGATCAACTGCGCACATCCCAGCCACTTCGCTGCCGTACTCGAGGATGGGGCCGACTGGGTAAACCGGATTGGTGG GTTGAGGGCAAATGCGTCTCGGTGCAGCCATGCCGAGGTAGATGCCATGAGCGAGCTTGATCGGGGCAATCCTGAGGAAC TTGCGGCTCTGCATTCCGAACTTCGGCTGCGGTTTCCGCACATCAACGTGCTCGGAGGCTGCTGCGGCACTGATCTTGAT CACATCACCGCGATCGCAGAGGCCTGCCTGTAG
Upstream 100 bases:
>100_bases GTGCTGTCAGCACAACGCGAACTCGCCCCATTCAACGTAAGCCGCAAGAGCCATTGGCTCACGCAAGGCACAGGCAAACT TCAAACTCCCAATCGTAACT
Downstream 100 bases:
>100_bases ATATCGCCGACCGATGAAACGATCTCGGCGATGAGTTGAAGCAGTGAACGTCGCCCGGCGACAACGGGAACCGGAACTAC AGGACAGTGCCCCTCCCCGC
Product: homocysteine S-methyltransferase
Products: NA
Alternate protein names: Homocysteine/Selenocysteine Methylase; Homocysteine S-Methyltransferase Domain-Containing Protein
Number of amino acids: Translated: 330; Mature: 330
Protein sequence:
>330_residues MLGHGCASMLNCRVNRDREGAMALAKLPQLESVFLTDAGLETDFIFNRGIDLPYFASITLLQSSDGKIALEEYFRGFLEL ARRMRCGLILESATWRASPDWAEPLGLSQQELDTLNTSAIAILRDLRDEFGSTMPAVVISGCLGPRGDGYDPGKIMSEEG AEAYHRHQAEVLASAGVDQLTAITMTNVPEAIGIAKAAKSLAVPVAISFTVETDGRLPTGDRLSDALRAVDQATASTPAY YMINCAHPSHFAAVLEDGADWVNRIGGLRANASRCSHAEVDAMSELDRGNPEELAALHSELRLRFPHINVLGGCCGTDLD HITAIAEACL
Sequences:
>Translated_330_residues MLGHGCASMLNCRVNRDREGAMALAKLPQLESVFLTDAGLETDFIFNRGIDLPYFASITLLQSSDGKIALEEYFRGFLEL ARRMRCGLILESATWRASPDWAEPLGLSQQELDTLNTSAIAILRDLRDEFGSTMPAVVISGCLGPRGDGYDPGKIMSEEG AEAYHRHQAEVLASAGVDQLTAITMTNVPEAIGIAKAAKSLAVPVAISFTVETDGRLPTGDRLSDALRAVDQATASTPAY YMINCAHPSHFAAVLEDGADWVNRIGGLRANASRCSHAEVDAMSELDRGNPEELAALHSELRLRFPHINVLGGCCGTDLD HITAIAEACL >Mature_330_residues MLGHGCASMLNCRVNRDREGAMALAKLPQLESVFLTDAGLETDFIFNRGIDLPYFASITLLQSSDGKIALEEYFRGFLEL ARRMRCGLILESATWRASPDWAEPLGLSQQELDTLNTSAIAILRDLRDEFGSTMPAVVISGCLGPRGDGYDPGKIMSEEG AEAYHRHQAEVLASAGVDQLTAITMTNVPEAIGIAKAAKSLAVPVAISFTVETDGRLPTGDRLSDALRAVDQATASTPAY YMINCAHPSHFAAVLEDGADWVNRIGGLRANASRCSHAEVDAMSELDRGNPEELAALHSELRLRFPHINVLGGCCGTDLD HITAIAEACL
Specific function: Unknown
COG id: COG2040
COG function: function code E; Homocysteine/selenocysteine methylase (S-methylmethionine-dependent)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35474; Mature: 35474
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: PS50970 HCY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGHGCASMLNCRVNRDREGAMALAKLPQLESVFLTDAGLETDFIFNRGIDLPYFASITL CCCHHHHHHHHCCCCCCCHHHHHHHHCCCHHHEEEECCCCCCHHHHHCCCCCCHHEEEEE LQSSDGKIALEEYFRGFLELARRMRCGLILESATWRASPDWAEPLGLSQQELDTLNTSAI EECCCCCEEHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH AILRDLRDEFGSTMPAVVISGCLGPRGDGYDPGKIMSEEGAEAYHRHQAEVLASAGVDQL HHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHH TAITMTNVPEAIGIAKAAKSLAVPVAISFTVETDGRLPTGDRLSDALRAVDQATASTPAY EEEEECCCCHHHHHHHHHHHHEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCE YMINCAHPSHFAAVLEDGADWVNRIGGLRANASRCSHAEVDAMSELDRGNPEELAALHSE EEEEECCCHHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH LRLRFPHINVLGGCCGTDLDHITAIAEACL HHEECCCCEEECCCCCCCHHHHHHHHHHCC >Mature Secondary Structure MLGHGCASMLNCRVNRDREGAMALAKLPQLESVFLTDAGLETDFIFNRGIDLPYFASITL CCCHHHHHHHHCCCCCCCHHHHHHHHCCCHHHEEEECCCCCCHHHHHCCCCCCHHEEEEE LQSSDGKIALEEYFRGFLELARRMRCGLILESATWRASPDWAEPLGLSQQELDTLNTSAI EECCCCCEEHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH AILRDLRDEFGSTMPAVVISGCLGPRGDGYDPGKIMSEEGAEAYHRHQAEVLASAGVDQL HHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHH TAITMTNVPEAIGIAKAAKSLAVPVAISFTVETDGRLPTGDRLSDALRAVDQATASTPAY EEEEECCCCHHHHHHHHHHHHEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCE YMINCAHPSHFAAVLEDGADWVNRIGGLRANASRCSHAEVDAMSELDRGNPEELAALHSE EEEEECCCHHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH LRLRFPHINVLGGCCGTDLDHITAIAEACL HHEECCCCEEECCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA