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The map label for this gene is yeeY [H]

Identifier: 87200478

GI number: 87200478

Start: 2660381

End: 2661277

Strand: Direct

Name: yeeY [H]

Synonym: Saro_2465

Alternate gene names: 87200478

Gene position: 2660381-2661277 (Clockwise)

Preceding gene: 87200475

Following gene: 87200479

Centisome position: 74.7

GC content: 64.1

Gene sequence:

>897_bases
ATGATCGACCCTGAATCCCTCGAGGCGCTCGAAGCCGTTGTCGATGCGGGCTCGCTGTCTGCTGCGGCTGGCCAACTGAA
CAAGGCGGTCTCGGCGGTGGGATATCACCTTCGGCGCCTTGAAGAGCAGATCGGCGTCCCCTTGCTCGATCGCAGCGGCT
ATCGCCTTGCGCTGACGCCCGAAGGCAAGAGCGTACTGGCCGAAGGGCGACCGATCCTCGAACGCCTGCGCGCGCTCGGC
ACCTTTGCCGAACGCTATCATGGCGGCTGGGAGCACCAGTTGCGCATCGTCTATGACGGCGCCCTGCCGGCCGAGGTCGT
TATCGGAGCGATCAACGCACTCGTCGAGGCCGGCGCACCGACCCATATCGAGCTCAACGTCGCCTATCTCGGCGCAGTCC
CGTTCGAATTCGACCGGAAGCAGGCCGACGTCATGATTGCGACGGCGTGGGAACCGAGGCTGGACTTGATCGGGCACCGC
CTGGCCACGCTCGGCTTCTCGTTGTGCTGCGCCGCAGGACATCCGCTCACGATGCGCACCAACGTCTCCCTGGAGGAACT
TCAGCGCGAGACCGAACTCATCATCCCCGGCCTTGCCGAAGACCGCAGTTTCGATGCGCGCCACTTCCGCAGCCGACGCA
TACTCAAGGTCAGCGACTTCAACACAAAACTCATCGCGATCCGGCGCGGTCTCGGTTTTGGCTGGTTACCCGACTATCTG
GCCAGCGATCTGGTCCGCAAGGGCAACCTGGCCCGCGTTCGGCTGGAGGGCGGCAACAGCTATGAACTGCAACCGGTCTT
CGCCCTGCATCGCGGCGCGGCGCCGGGCCGGGCGCGGCAGATGCTGTTGGACATGCTGCTCCTTGCGACATGGGACACAT
ATGTCAAACCGGAGTAA

Upstream 100 bases:

>100_bases
CATGCACTCCGGCTGGTCGCCGGTTCAGGCGAGAAGATCGCGCGATTCATTTTCAAATAAAATGTCAAAGATTGAGAAAA
GATGTGCTAATTTTTAGTCA

Downstream 100 bases:

>100_bases
GACAAGGCAGCGCATCGATGCCGTGCAACGAAGTTGCCGATCCAGTCGCCACCTGTCGCCAATTGGCGCGGCCTGGCAGA
CAATCTCCGCAACGGTGCCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MIDPESLEALEAVVDAGSLSAAAGQLNKAVSAVGYHLRRLEEQIGVPLLDRSGYRLALTPEGKSVLAEGRPILERLRALG
TFAERYHGGWEHQLRIVYDGALPAEVVIGAINALVEAGAPTHIELNVAYLGAVPFEFDRKQADVMIATAWEPRLDLIGHR
LATLGFSLCCAAGHPLTMRTNVSLEELQRETELIIPGLAEDRSFDARHFRSRRILKVSDFNTKLIAIRRGLGFGWLPDYL
ASDLVRKGNLARVRLEGGNSYELQPVFALHRGAAPGRARQMLLDMLLLATWDTYVKPE

Sequences:

>Translated_298_residues
MIDPESLEALEAVVDAGSLSAAAGQLNKAVSAVGYHLRRLEEQIGVPLLDRSGYRLALTPEGKSVLAEGRPILERLRALG
TFAERYHGGWEHQLRIVYDGALPAEVVIGAINALVEAGAPTHIELNVAYLGAVPFEFDRKQADVMIATAWEPRLDLIGHR
LATLGFSLCCAAGHPLTMRTNVSLEELQRETELIIPGLAEDRSFDARHFRSRRILKVSDFNTKLIAIRRGLGFGWLPDYL
ASDLVRKGNLARVRLEGGNSYELQPVFALHRGAAPGRARQMLLDMLLLATWDTYVKPE
>Mature_298_residues
MIDPESLEALEAVVDAGSLSAAAGQLNKAVSAVGYHLRRLEEQIGVPLLDRSGYRLALTPEGKSVLAEGRPILERLRALG
TFAERYHGGWEHQLRIVYDGALPAEVVIGAINALVEAGAPTHIELNVAYLGAVPFEFDRKQADVMIATAWEPRLDLIGHR
LATLGFSLCCAAGHPLTMRTNVSLEELQRETELIIPGLAEDRSFDARHFRSRRILKVSDFNTKLIAIRRGLGFGWLPDYL
ASDLVRKGNLARVRLEGGNSYELQPVFALHRGAAPGRARQMLLDMLLLATWDTYVKPE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082024, Length=262, Percent_Identity=29.3893129770992, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1789492, Length=267, Percent_Identity=28.4644194756554, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1787949, Length=293, Percent_Identity=25.5972696245734, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1786713, Length=270, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1790262, Length=258, Percent_Identity=25.968992248062, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32836; Mature: 32836

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDPESLEALEAVVDAGSLSAAAGQLNKAVSAVGYHLRRLEEQIGVPLLDRSGYRLALTP
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCEEEECC
EGKSVLAEGRPILERLRALGTFAERYHGGWEHQLRIVYDGALPAEVVIGAINALVEAGAP
CCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCC
THIELNVAYLGAVPFEFDRKQADVMIATAWEPRLDLIGHRLATLGFSLCCAAGHPLTMRT
CEEEEEEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE
NVSLEELQRETELIIPGLAEDRSFDARHFRSRRILKVSDFNTKLIAIRRGLGFGWLPDYL
CCCHHHHHHHHHEECCCCCCCCCCCHHHHHCCCEEEEECCCEEEEEEECCCCCCCCHHHH
ASDLVRKGNLARVRLEGGNSYELQPVFALHRGAAPGRARQMLLDMLLLATWDTYVKPE
HHHHHHCCCEEEEEECCCCCEECCHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHCCCC
>Mature Secondary Structure
MIDPESLEALEAVVDAGSLSAAAGQLNKAVSAVGYHLRRLEEQIGVPLLDRSGYRLALTP
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCEEEECC
EGKSVLAEGRPILERLRALGTFAERYHGGWEHQLRIVYDGALPAEVVIGAINALVEAGAP
CCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCC
THIELNVAYLGAVPFEFDRKQADVMIATAWEPRLDLIGHRLATLGFSLCCAAGHPLTMRT
CEEEEEEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE
NVSLEELQRETELIIPGLAEDRSFDARHFRSRRILKVSDFNTKLIAIRRGLGFGWLPDYL
CCCHHHHHHHHHEECCCCCCCCCCCHHHHHCCCEEEEECCCEEEEEEECCCCCCCCHHHH
ASDLVRKGNLARVRLEGGNSYELQPVFALHRGAAPGRARQMLLDMLLLATWDTYVKPE
HHHHHHCCCEEEEEECCCCCEECCHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]