| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200475
Identifier: 87200475
GI number: 87200475
Start: 2657679
End: 2658371
Strand: Direct
Name: 87200475
Synonym: Saro_2462
Alternate gene names: NA
Gene position: 2657679-2658371 (Clockwise)
Preceding gene: 87200469
Following gene: 87200478
Centisome position: 74.62
GC content: 65.08
Gene sequence:
>693_bases ATGAACCCCTTCGAGGAGAGCCATCTCGTCGAGCGCATCGGATGGTTGCGTGCGGCGGTTCTGGGCGCAAACGACGGTAT CGTCTCGACGGCAAGTCTCATCATCGGCGTTGCGGCGTCGGGCGCGGACAGGCAGGCGATCATCGTGGCAGCAATGGCAG GGCTGGTCGCGGGGGCCATGTCGATGGCCGCCGGGGAATACGTTTCGGTCAGTTCCCAAGCTGATACCGAGAAGGCAGAT CTGGCAAGAGAGACAGCGGAACTCGCCGCAGACCCCGAATTCGAGCATAGGGAACTGGCTGCAATCTATGTCGCGCGCGG CGTCGATGCCGATACGGCAGACAAGGTCGCGGCGCAGATGATGGCCCACGATCCGTTGACCACCCACGCACGCGACGAAT TGCACATCACCTCGACCACTGCGGCAAGGCCGGTTGTTGCAGCCCTCGCGTCCGCCGCAACCTTCACGGCCGGGGCGCTG CTGCCGGTCCTTCTTGCCGCATTGCTGCCAATGTCGCTTTTGGCAGCCGGCGAAGCAGTAGGGTCCATCCTGTTCCTTGC CCTGCTGGGGACATTGGGCGCCAGGGCCGGTGGTGCGCCAGCCGGACGACCGGTCGCTCGCGTCGTCTTCTGGGGAGCAT TGGCCATGGCGCTTACGGCCGGCATCGGCCGGCTCGTCGGAGCCGTAGTCTAG
Upstream 100 bases:
>100_bases GTCCCTGTCCCCTCCCCCCTTGGCAGACGACTGGCGTCCTCGCATTATCGTGTCGCGGCCCGATCGTTCCGATTCTGGTC CACCTGAAGGAACACACTGC
Downstream 100 bases:
>100_bases GCGATACGCCGTGGCCGGATCATGGCGCGGGCCTGATCACGGCACGGCATTCTCCAAAGCCGATCGGGGCCCGCCCTGGT GCCGTCGCGGTGGCCGAGAA
Product: hypothetical protein
Products: NA
Alternate protein names: Nodulin; Nodulin-Related Protein; Iron And Manganese Transporter; Nodulin-Like Protein-Like Protein; Transmembrane Protein; Nodulin-Related Transmembrane Protein; Nodulin- Domain-Containing Protein; Nodulin-Related Integral Membrane Protein DUF; Mebrane Associated Protein DUF; Nodulin-
Number of amino acids: Translated: 230; Mature: 230
Protein sequence:
>230_residues MNPFEESHLVERIGWLRAAVLGANDGIVSTASLIIGVAASGADRQAIIVAAMAGLVAGAMSMAAGEYVSVSSQADTEKAD LARETAELAADPEFEHRELAAIYVARGVDADTADKVAAQMMAHDPLTTHARDELHITSTTAARPVVAALASAATFTAGAL LPVLLAALLPMSLLAAGEAVGSILFLALLGTLGARAGGAPAGRPVARVVFWGALAMALTAGIGRLVGAVV
Sequences:
>Translated_230_residues MNPFEESHLVERIGWLRAAVLGANDGIVSTASLIIGVAASGADRQAIIVAAMAGLVAGAMSMAAGEYVSVSSQADTEKAD LARETAELAADPEFEHRELAAIYVARGVDADTADKVAAQMMAHDPLTTHARDELHITSTTAARPVVAALASAATFTAGAL LPVLLAALLPMSLLAAGEAVGSILFLALLGTLGARAGGAPAGRPVARVVFWGALAMALTAGIGRLVGAVV >Mature_230_residues MNPFEESHLVERIGWLRAAVLGANDGIVSTASLIIGVAASGADRQAIIVAAMAGLVAGAMSMAAGEYVSVSSQADTEKAD LARETAELAADPEFEHRELAAIYVARGVDADTADKVAAQMMAHDPLTTHARDELHITSTTAARPVVAALASAATFTAGAL LPVLLAALLPMSLLAAGEAVGSILFLALLGTLGARAGGAPAGRPVARVVFWGALAMALTAGIGRLVGAVV
Specific function: Unknown
COG id: COG1814
COG function: function code S; Uncharacterized membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23144; Mature: 23144
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPFEESHLVERIGWLRAAVLGANDGIVSTASLIIGVAASGADRQAIIVAAMAGLVAGAM CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH SMAAGEYVSVSSQADTEKADLARETAELAADPEFEHRELAAIYVARGVDADTADKVAAQM HHHCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH MAHDPLTTHARDELHITSTTAARPVVAALASAATFTAGALLPVLLAALLPMSLLAAGEAV HHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GSILFLALLGTLGARAGGAPAGRPVARVVFWGALAMALTAGIGRLVGAVV HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNPFEESHLVERIGWLRAAVLGANDGIVSTASLIIGVAASGADRQAIIVAAMAGLVAGAM CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH SMAAGEYVSVSSQADTEKADLARETAELAADPEFEHRELAAIYVARGVDADTADKVAAQM HHHCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH MAHDPLTTHARDELHITSTTAARPVVAALASAATFTAGALLPVLLAALLPMSLLAAGEAV HHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GSILFLALLGTLGARAGGAPAGRPVARVVFWGALAMALTAGIGRLVGAVV HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA