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The map label for this gene is yfdE [H]

Identifier: 87200469

GI number: 87200469

Start: 2647738

End: 2648964

Strand: Direct

Name: yfdE [H]

Synonym: Saro_2456

Alternate gene names: 87200469

Gene position: 2647738-2648964 (Clockwise)

Preceding gene: 87200462

Following gene: 87200475

Centisome position: 74.34

GC content: 67.32

Gene sequence:

>1227_bases
ATGGAAAGCGCCGGGAACCGCCCGCTGAGCAGCCACACCGGCGATCTCGATGGAGTCGGCCATGCCGGCACCCCGGAGAC
AAGGGGGCCTCTTGCGGGGATTCGGGTGGTCGAATTCGCCGGGCTCGGACCCACGCCGTTCAGTTGCATGATCCTGGCCG
ATTTCGGCGCGGAAGTCCTGCGCGTCGAGCGTATCGGGCAGGTCTCGGCGGCGGGCGGAGACGAACGCTACAACTACCTG
AACCGCAGCCGAAGCACGATCGCGCTGGACCTGAAGAGCGATGAGGGCCTTGCCCTGGCCCGCGAACTGGCATCGCGGGC
GGATGTGCTGGTCGAAGGATTCCGGCCGGGCGCGATGGAGCGCCTGGGCCTTGGGCCAGATGAACTGTGCGCCCTCAATC
CGCGCCTTGTCTATTCCCGGATGACCGGCTGGGGCCAGACCGGCCCGCTGGCCCAGACCGCCGGACACGACATCAACTAT
CTCGCACTGACAGGAGGACTTGATCTCATCGGCCCGCCCGACCAGCCACCGCCGCCGCCGCTCAACTTTGCCGCGAACTT
CGGGGGCGGCGGCATGCTGCTGGTGGCCGGCATCCTTGCCGCGCTGGTGGAACGCGCGACAAGCGGGCGAGGCCAGGTGA
TCGACGCCGCGATGATCGACGGAGCATCACTGTTGATGACGCAGGTCTTCGCGTGGACCCGCATGGGTATCTGGCGGCCC
GGCCGAGGCGGCAACCTGCTCGACGGAAGCGCCTATTTCTATCGCTGCTACGAGACGAGCGACGGACGCTACATGGCCGT
GGGCGCGCTCGAGCCGCAGTTCCACGCGCTGTTCGTTGCCGCGTTGGGCCTCGACCCGGTCGAATTTGCGAACCACCTTG
ATCCGAGGAACTGGGCAGAACGGGCAACGCGCATCGCACTGCTCTTCCGCGAGCGGACCCAGGCGGAATGGACGGCGGTG
TTCGAAGGGATCGATGCCTGCGTCACCCCGGTGCTGTCGCCCGAGGAAGCAGTACATCATCCGGCAAACATGGCGCGAGG
TGTGCACGTGGGCCCGGAAGATGCACGACAGCCCGCCCCTGCTCCGCGCCTGTCGCGGACGCCCGGAATGGTGCGCAGCA
TGCCGTCGCTGGCAGGCGAGAATGGTGCACAGGCACTCGAGAATTGGGGTTTCGACAGCAGGACGATTGCCACCCTGAAC
GCGGCCGGGGTGCTGGCGGCGCGCTAG

Upstream 100 bases:

>100_bases
GCTAGTATATTTTTTGACCTGTGATAAGAATTACGGAAAGATCGTGCCGGAATGCACGGCAAATTGCGGCTGAAAACGGC
CAAACGGGGAAATCGAATTG

Downstream 100 bases:

>100_bases
CCGCTCCCCATCGGATCAAGAACCGGACGGAAGCCGCTTCCATCGCGCAGCACGCGCGCCATATGGCTGCCGCCGAAATG
TGCCGGGATCAACAAGGCCT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MESAGNRPLSSHTGDLDGVGHAGTPETRGPLAGIRVVEFAGLGPTPFSCMILADFGAEVLRVERIGQVSAAGGDERYNYL
NRSRSTIALDLKSDEGLALARELASRADVLVEGFRPGAMERLGLGPDELCALNPRLVYSRMTGWGQTGPLAQTAGHDINY
LALTGGLDLIGPPDQPPPPPLNFAANFGGGGMLLVAGILAALVERATSGRGQVIDAAMIDGASLLMTQVFAWTRMGIWRP
GRGGNLLDGSAYFYRCYETSDGRYMAVGALEPQFHALFVAALGLDPVEFANHLDPRNWAERATRIALLFRERTQAEWTAV
FEGIDACVTPVLSPEEAVHHPANMARGVHVGPEDARQPAPAPRLSRTPGMVRSMPSLAGENGAQALENWGFDSRTIATLN
AAGVLAAR

Sequences:

>Translated_408_residues
MESAGNRPLSSHTGDLDGVGHAGTPETRGPLAGIRVVEFAGLGPTPFSCMILADFGAEVLRVERIGQVSAAGGDERYNYL
NRSRSTIALDLKSDEGLALARELASRADVLVEGFRPGAMERLGLGPDELCALNPRLVYSRMTGWGQTGPLAQTAGHDINY
LALTGGLDLIGPPDQPPPPPLNFAANFGGGGMLLVAGILAALVERATSGRGQVIDAAMIDGASLLMTQVFAWTRMGIWRP
GRGGNLLDGSAYFYRCYETSDGRYMAVGALEPQFHALFVAALGLDPVEFANHLDPRNWAERATRIALLFRERTQAEWTAV
FEGIDACVTPVLSPEEAVHHPANMARGVHVGPEDARQPAPAPRLSRTPGMVRSMPSLAGENGAQALENWGFDSRTIATLN
AAGVLAAR
>Mature_408_residues
MESAGNRPLSSHTGDLDGVGHAGTPETRGPLAGIRVVEFAGLGPTPFSCMILADFGAEVLRVERIGQVSAAGGDERYNYL
NRSRSTIALDLKSDEGLALARELASRADVLVEGFRPGAMERLGLGPDELCALNPRLVYSRMTGWGQTGPLAQTAGHDINY
LALTGGLDLIGPPDQPPPPPLNFAANFGGGGMLLVAGILAALVERATSGRGQVIDAAMIDGASLLMTQVFAWTRMGIWRP
GRGGNLLDGSAYFYRCYETSDGRYMAVGALEPQFHALFVAALGLDPVEFANHLDPRNWAERATRIALLFRERTQAEWTAV
FEGIDACVTPVLSPEEAVHHPANMARGVHVGPEDARQPAPAPRLSRTPGMVRSMPSLAGENGAQALENWGFDSRTIATLN
AAGVLAAR

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=385, Percent_Identity=44.9350649350649, Blast_Score=331, Evalue=9e-91,
Organism=Homo sapiens, GI266456254, Length=385, Percent_Identity=44.9350649350649, Blast_Score=330, Evalue=1e-90,
Organism=Homo sapiens, GI266458393, Length=255, Percent_Identity=48.6274509803922, Blast_Score=242, Evalue=6e-64,
Organism=Homo sapiens, GI266458397, Length=251, Percent_Identity=48.605577689243, Blast_Score=238, Evalue=9e-63,
Organism=Homo sapiens, GI300863128, Length=400, Percent_Identity=29.5, Blast_Score=163, Evalue=2e-40,
Organism=Homo sapiens, GI300863124, Length=426, Percent_Identity=29.1079812206573, Blast_Score=156, Evalue=3e-38,
Organism=Homo sapiens, GI266458395, Length=142, Percent_Identity=51.4084507042254, Blast_Score=137, Evalue=1e-32,
Organism=Homo sapiens, GI42822893, Length=142, Percent_Identity=51.4084507042254, Blast_Score=137, Evalue=3e-32,
Organism=Homo sapiens, GI13376042, Length=426, Percent_Identity=26.056338028169, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI300863126, Length=156, Percent_Identity=35.8974358974359, Blast_Score=110, Evalue=3e-24,
Organism=Escherichia coli, GI87082093, Length=342, Percent_Identity=31.5789473684211, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1788717, Length=204, Percent_Identity=32.843137254902, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1786222, Length=399, Percent_Identity=26.3157894736842, Blast_Score=84, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI115535051, Length=311, Percent_Identity=38.2636655948553, Blast_Score=207, Evalue=8e-54,
Organism=Caenorhabditis elegans, GI32564160, Length=336, Percent_Identity=34.2261904761905, Blast_Score=193, Evalue=1e-49,
Organism=Drosophila melanogaster, GI24585488, Length=344, Percent_Identity=45.3488372093023, Blast_Score=301, Evalue=4e-82,
Organism=Drosophila melanogaster, GI24648431, Length=403, Percent_Identity=30.0248138957816, Blast_Score=138, Evalue=7e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43288; Mature: 43288

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESAGNRPLSSHTGDLDGVGHAGTPETRGPLAGIRVVEFAGLGPTPFSCMILADFGAEVL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCHHHH
RVERIGQVSAAGGDERYNYLNRSRSTIALDLKSDEGLALARELASRADVLVEGFRPGAME
HHHHHCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHH
RLGLGPDELCALNPRLVYSRMTGWGQTGPLAQTAGHDINYLALTGGLDLIGPPDQPPPPP
HHCCCHHHHHCCCCHHHHHHHCCCCCCCCCHHHCCCCCEEEEEECCCCCCCCCCCCCCCC
LNFAANFGGGGMLLVAGILAALVERATSGRGQVIDAAMIDGASLLMTQVFAWTRMGIWRP
CCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHCCHHHHHHHHHHHHHHCCCCC
GRGGNLLDGSAYFYRCYETSDGRYMAVGALEPQFHALFVAALGLDPVEFANHLDPRNWAE
CCCCCCCCCCEEEEEEEECCCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHCCCCHHHHH
RATRIALLFRERTQAEWTAVFEGIDACVTPVLSPEEAVHHPANMARGVHVGPEDARQPAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHCCCCCCCHHHCCCCC
APRLSRTPGMVRSMPSLAGENGAQALENWGFDSRTIATLNAAGVLAAR
CCCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEEECCEEEECC
>Mature Secondary Structure
MESAGNRPLSSHTGDLDGVGHAGTPETRGPLAGIRVVEFAGLGPTPFSCMILADFGAEVL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCHHHH
RVERIGQVSAAGGDERYNYLNRSRSTIALDLKSDEGLALARELASRADVLVEGFRPGAME
HHHHHCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHH
RLGLGPDELCALNPRLVYSRMTGWGQTGPLAQTAGHDINYLALTGGLDLIGPPDQPPPPP
HHCCCHHHHHCCCCHHHHHHHCCCCCCCCCHHHCCCCCEEEEEECCCCCCCCCCCCCCCC
LNFAANFGGGGMLLVAGILAALVERATSGRGQVIDAAMIDGASLLMTQVFAWTRMGIWRP
CCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHCCHHHHHHHHHHHHHHCCCCC
GRGGNLLDGSAYFYRCYETSDGRYMAVGALEPQFHALFVAALGLDPVEFANHLDPRNWAE
CCCCCCCCCCEEEEEEEECCCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHCCCCHHHHH
RATRIALLFRERTQAEWTAVFEGIDACVTPVLSPEEAVHHPANMARGVHVGPEDARQPAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHCCCCCCCHHHCCCCC
APRLSRTPGMVRSMPSLAGENGAQALENWGFDSRTIATLNAAGVLAAR
CCCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEEECCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]