| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is fyuA [H]
Identifier: 87200460
GI number: 87200460
Start: 2634603
End: 2636954
Strand: Direct
Name: fyuA [H]
Synonym: Saro_2447
Alternate gene names: 87200460
Gene position: 2634603-2636954 (Clockwise)
Preceding gene: 87200453
Following gene: 87200462
Centisome position: 73.97
GC content: 64.67
Gene sequence:
>2352_bases ATGAGGTTCAAGCACATTGCCCATGCGCGCGCACTGGCCCTTTCCGCCAGTGCCCTGACGCTTTGCCTTGGAGCGCAGGC GCACGCCCAGGAGGCCGCGCAGGAACAGGCCGCGGAAGAGACCGGCGGCATCAGCGAGATCGTCGTCACCGCGCAGAAGG TCGCCGAAAACGTCCAGGACGTGCCGATCGCGATCACCGCACTGACCGCCGAACGACTCGAGAACGCAGGCACCACCAGC CTCGAAGGGCTGACCCAGCTTGTCCCGTCGGTCACGTTCCGCAAGGGCACCACCAGCGCAAACAGCGCCATCGTGATGCG CGGCGTCGGCACGATCACCTTCTCGGTCGCGGCCGAGCCCAGCGTCTCGACCGTGGTCGACGGCGTGGTGCTGAGCCGCT CGGGCCAGGCGTTCATGGACCTGGTCGATGCCGAGCGCCTGGAAGTGCTGCGCGGGCCGCAGGGCACACTGTTCGGCAAG AACGCGTCGGCGGGCCTCGTCAACATCGTCTCGAAGGGCGGCACCGATACGCTCCAGGCCGAAGGCCGCGCTGAATGGTA CGAAGGCGACGAATACCGCCTGCGCGCTTCGGTTTCCGGCCCGCTTGCCGATGGCCTGACCGCCCGCGTCACCGGCTTCT ACGGCAGCTATGACGGCAACATCACCAACATCTACGGCGGCAAGAACGAGAAGATCAACGGCTACGAACACTACGGTGCG CGCGGCATCATCGACTATGACAATGGTGGATCGAAGTTCCGCCTGATCGCCGACTATTTCAAGGCGAATGACGACTGCTG CGCCGACGTGACCACCGTCAGCCGTGGCACGGCGCTCGACAAGGAACTGGGCCTGCCGGGCGGCGTGGCGCAGGGACTGG AGCAGCGCTACGTCAACCACAACCTCGTCACGCAGACCAAGGACCGCCAGTGGAGCCTCACCGCGTCAGGCGACTTCGAC GTGTTCGAGAGCCATACGCTGAGCGTGGTGGCGGGCTATCGCAACTGGAAGAACGAGGAAATCCGCGAGGGCGACTTCCT GCCGCGCGCGCTGGTCGGCACCGACCAGCTTCACGACAACGGCGAAGTGAGGACCGAGCAGCTCTCGCTGGAAGTGCGCC TCGCGTCCGACCAGACCAAGCCGTTCTTCTATCAGGTCGGCGCATTCGCGTGGGGTTCGAACAACCAGCAGGACTTCACC CGCAGCGACGTGAAGTGCGCCACTTCCACGCTGCCGGTCGATCCGCTGACGGGCGCCCAGCCGTGCAACCTCAACGACAC GGTCAACACGATCTTCCCAACGGCGACCTCGTTCAGCGACGTGAAGTCGCGCAACTATGCGGTGTTCGGCCAGGCGACCT ATCGCTTCTCCGACCTGATCTCGCTGACCGGCGGGCTGCGCTACACATGGGATGACCTCTCGTTCACCCACACCCGTGCG CCGGGCGTGAACGCGACGGACGGCCTTCCCGCGACCGGCGCAGGCATCAACGACAACCCGGCGGGCGGCAAGATTTCTGC CGGCGGCAACGGAACGAACACCTCGCGCGGGAGCAGCAACAACGGCAACCTTTCGGGCCGCGCGGTCCTGCAGATCACAC CTTCGGACGACGTGATGCTCTATGGCAGCTACACCCGTGGCTACAAGGGTCCGGCGTTCAACGTGTTCTTCAATCACACT GCGCCAACCAATGCCGTGCCGATCGACGAGGAAACTTCCGATGCCTTCGAAATCGGGCTCAAGTCGCAGTTCCTCGACAA CCGTGTGCAGTTCAACGCGGCAGCCTTCACCGTCACCTACAACGGCTTCCAGGCGAACAACTTCGTGCTGCTGAACGGCG CGGTGGTCTCGAATCTGACCAACGCGGGTTCGGTGCGCAGCAAGGGCTTTGAAGCCGACCTGCTGACCGTGCCGGTAGAC GGGCTGACCCTGCGCGCAAGTGCCGCCTATGCCGATGCCAAGGTGCTGAAGTTCAACCCGAACCCTTCGACCAACGCACC CGACGCCCGCAATGGCACGCGCTTGCCGCTGGCGCCCAAGTTCACCTGGACGCTGGGTGGCAGCTACGAACGTGACCTGG GCGGCTTCAAGGTCTATCTCGACAGCGATTTCCGCCATGTCGGCAAGCAGTTCTCGGACCTTGGCGAATCCGGCCCGATC GCGGCGTATGGCATCTGGAACGCCGGGCTCGGCTTCTCGGATGCGGAGGACCTCTACCGGCTGACGTTCCACGTGCGGAA CATCACCGACAAGTCCTACGCCCTGCTCAACGTCAGCAGCGGCCAGCGCCTGCAGATCCCGCGCGACGCAGACCGCTACT TCGGCGTCAGCCTGCGCGCGAAGATCAGGTAA
Upstream 100 bases:
>100_bases TATCGAGACAACGAGCGCAGATCAAGCATCAATCGCGGCCGATCAACGGGGGAGCAAAGTCGACTCCCGGACGACCGCCT TTCGCAGGGGAGAGGTTTTT
Downstream 100 bases:
>100_bases CCGCCCCCCCTCCCGGGCGGGAAAGCAGAGAGGCCCCGGACTTCGGTCCGGGGCCTCTCTTGTTTTTGGCACAGGGCGGA CATGGCGCCAACGCATCGCG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: IPR65; IRPC [H]
Number of amino acids: Translated: 783; Mature: 783
Protein sequence:
>783_residues MRFKHIAHARALALSASALTLCLGAQAHAQEAAQEQAAEETGGISEIVVTAQKVAENVQDVPIAITALTAERLENAGTTS LEGLTQLVPSVTFRKGTTSANSAIVMRGVGTITFSVAAEPSVSTVVDGVVLSRSGQAFMDLVDAERLEVLRGPQGTLFGK NASAGLVNIVSKGGTDTLQAEGRAEWYEGDEYRLRASVSGPLADGLTARVTGFYGSYDGNITNIYGGKNEKINGYEHYGA RGIIDYDNGGSKFRLIADYFKANDDCCADVTTVSRGTALDKELGLPGGVAQGLEQRYVNHNLVTQTKDRQWSLTASGDFD VFESHTLSVVAGYRNWKNEEIREGDFLPRALVGTDQLHDNGEVRTEQLSLEVRLASDQTKPFFYQVGAFAWGSNNQQDFT RSDVKCATSTLPVDPLTGAQPCNLNDTVNTIFPTATSFSDVKSRNYAVFGQATYRFSDLISLTGGLRYTWDDLSFTHTRA PGVNATDGLPATGAGINDNPAGGKISAGGNGTNTSRGSSNNGNLSGRAVLQITPSDDVMLYGSYTRGYKGPAFNVFFNHT APTNAVPIDEETSDAFEIGLKSQFLDNRVQFNAAAFTVTYNGFQANNFVLLNGAVVSNLTNAGSVRSKGFEADLLTVPVD GLTLRASAAYADAKVLKFNPNPSTNAPDARNGTRLPLAPKFTWTLGGSYERDLGGFKVYLDSDFRHVGKQFSDLGESGPI AAYGIWNAGLGFSDAEDLYRLTFHVRNITDKSYALLNVSSGQRLQIPRDADRYFGVSLRAKIR
Sequences:
>Translated_783_residues MRFKHIAHARALALSASALTLCLGAQAHAQEAAQEQAAEETGGISEIVVTAQKVAENVQDVPIAITALTAERLENAGTTS LEGLTQLVPSVTFRKGTTSANSAIVMRGVGTITFSVAAEPSVSTVVDGVVLSRSGQAFMDLVDAERLEVLRGPQGTLFGK NASAGLVNIVSKGGTDTLQAEGRAEWYEGDEYRLRASVSGPLADGLTARVTGFYGSYDGNITNIYGGKNEKINGYEHYGA RGIIDYDNGGSKFRLIADYFKANDDCCADVTTVSRGTALDKELGLPGGVAQGLEQRYVNHNLVTQTKDRQWSLTASGDFD VFESHTLSVVAGYRNWKNEEIREGDFLPRALVGTDQLHDNGEVRTEQLSLEVRLASDQTKPFFYQVGAFAWGSNNQQDFT RSDVKCATSTLPVDPLTGAQPCNLNDTVNTIFPTATSFSDVKSRNYAVFGQATYRFSDLISLTGGLRYTWDDLSFTHTRA PGVNATDGLPATGAGINDNPAGGKISAGGNGTNTSRGSSNNGNLSGRAVLQITPSDDVMLYGSYTRGYKGPAFNVFFNHT APTNAVPIDEETSDAFEIGLKSQFLDNRVQFNAAAFTVTYNGFQANNFVLLNGAVVSNLTNAGSVRSKGFEADLLTVPVD GLTLRASAAYADAKVLKFNPNPSTNAPDARNGTRLPLAPKFTWTLGGSYERDLGGFKVYLDSDFRHVGKQFSDLGESGPI AAYGIWNAGLGFSDAEDLYRLTFHVRNITDKSYALLNVSSGQRLQIPRDADRYFGVSLRAKIR >Mature_783_residues MRFKHIAHARALALSASALTLCLGAQAHAQEAAQEQAAEETGGISEIVVTAQKVAENVQDVPIAITALTAERLENAGTTS LEGLTQLVPSVTFRKGTTSANSAIVMRGVGTITFSVAAEPSVSTVVDGVVLSRSGQAFMDLVDAERLEVLRGPQGTLFGK NASAGLVNIVSKGGTDTLQAEGRAEWYEGDEYRLRASVSGPLADGLTARVTGFYGSYDGNITNIYGGKNEKINGYEHYGA RGIIDYDNGGSKFRLIADYFKANDDCCADVTTVSRGTALDKELGLPGGVAQGLEQRYVNHNLVTQTKDRQWSLTASGDFD VFESHTLSVVAGYRNWKNEEIREGDFLPRALVGTDQLHDNGEVRTEQLSLEVRLASDQTKPFFYQVGAFAWGSNNQQDFT RSDVKCATSTLPVDPLTGAQPCNLNDTVNTIFPTATSFSDVKSRNYAVFGQATYRFSDLISLTGGLRYTWDDLSFTHTRA PGVNATDGLPATGAGINDNPAGGKISAGGNGTNTSRGSSNNGNLSGRAVLQITPSDDVMLYGSYTRGYKGPAFNVFFNHT APTNAVPIDEETSDAFEIGLKSQFLDNRVQFNAAAFTVTYNGFQANNFVLLNGAVVSNLTNAGSVRSKGFEADLLTVPVD GLTLRASAAYADAKVLKFNPNPSTNAPDARNGTRLPLAPKFTWTLGGSYERDLGGFKVYLDSDFRHVGKQFSDLGESGPI AAYGIWNAGLGFSDAEDLYRLTFHVRNITDKSYALLNVSSGQRLQIPRDADRYFGVSLRAKIR
Specific function: Receptor for the bacteriocin pesticin and for the siderophore yersiniabactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=207, Percent_Identity=30.4347826086957, Blast_Score=70, Evalue=7e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 83997; Mature: 83997
Theoretical pI: Translated: 5.33; Mature: 5.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFKHIAHARALALSASALTLCLGAQAHAQEAAQEQAAEETGGISEIVVTAQKVAENVQD CCCHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC VPIAITALTAERLENAGTTSLEGLTQLVPSVTFRKGTTSANSAIVMRGVGTITFSVAAEP CCEEEEEEEHHHHHCCCCCHHHHHHHHHCCCEEECCCCCCCCEEEEEECCEEEEEEECCC SVSTVVDGVVLSRSGQAFMDLVDAERLEVLRGPQGTLFGKNASAGLVNIVSKGGTDTLQA CHHHHHCCEEEECCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEEEECCCCCCEEEC EGRAEWYEGDEYRLRASVSGPLADGLTARVTGFYGSYDGNITNIYGGKNEKINGYEHYGA CCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCC RGIIDYDNGGSKFRLIADYFKANDDCCADVTTVSRGTALDKELGLPGGVAQGLEQRYVNH CEEEEECCCCCEEEEEEEHHCCCCCCCCCEEECCCCCCCHHHCCCCCHHHHHHHHHHCCC NLVTQTKDRQWSLTASGDFDVFESHTLSVVAGYRNWKNEEIREGDFLPRALVGTDQLHDN CCEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCC GEVRTEQLSLEVRLASDQTKPFFYQVGAFAWGSNNQQDFTRSDVKCATSTLPVDPLTGAQ CCEEEEEEEEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCC PCNLNDTVNTIFPTATSFSDVKSRNYAVFGQATYRFSDLISLTGGLRYTWDDLSFTHTRA CCCCCCCHHHCCCCCCCHHHHCCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCEEECCC PGVNATDGLPATGAGINDNPAGGKISAGGNGTNTSRGSSNNGNLSGRAVLQITPSDDVML CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE YGSYTRGYKGPAFNVFFNHTAPTNAVPIDEETSDAFEIGLKSQFLDNRVQFNAAAFTVTY EECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHCCHHHHHCCCEEEEEEEEEEEE NGFQANNFVLLNGAVVSNLTNAGSVRSKGFEADLLTVPVDGLTLRASAAYADAKVLKFNP CCEECCCEEEECCHHHHCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECC NPSTNAPDARNGTRLPLAPKFTWTLGGSYERDLGGFKVYLDSDFRHVGKQFSDLGESGPI CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECHHHHHHHHHHHCCCCCCE AAYGIWNAGLGFSDAEDLYRLTFHVRNITDKSYALLNVSSGQRLQIPRDADRYFGVSLRA EEEEECCCCCCCCCHHHHEEEEEEEECCCCCCEEEEECCCCCEEECCCCCCHHCCEEEEE KIR ECC >Mature Secondary Structure MRFKHIAHARALALSASALTLCLGAQAHAQEAAQEQAAEETGGISEIVVTAQKVAENVQD CCCHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC VPIAITALTAERLENAGTTSLEGLTQLVPSVTFRKGTTSANSAIVMRGVGTITFSVAAEP CCEEEEEEEHHHHHCCCCCHHHHHHHHHCCCEEECCCCCCCCEEEEEECCEEEEEEECCC SVSTVVDGVVLSRSGQAFMDLVDAERLEVLRGPQGTLFGKNASAGLVNIVSKGGTDTLQA CHHHHHCCEEEECCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEEEECCCCCCEEEC EGRAEWYEGDEYRLRASVSGPLADGLTARVTGFYGSYDGNITNIYGGKNEKINGYEHYGA CCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCC RGIIDYDNGGSKFRLIADYFKANDDCCADVTTVSRGTALDKELGLPGGVAQGLEQRYVNH CEEEEECCCCCEEEEEEEHHCCCCCCCCCEEECCCCCCCHHHCCCCCHHHHHHHHHHCCC NLVTQTKDRQWSLTASGDFDVFESHTLSVVAGYRNWKNEEIREGDFLPRALVGTDQLHDN CCEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCC GEVRTEQLSLEVRLASDQTKPFFYQVGAFAWGSNNQQDFTRSDVKCATSTLPVDPLTGAQ CCEEEEEEEEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCC PCNLNDTVNTIFPTATSFSDVKSRNYAVFGQATYRFSDLISLTGGLRYTWDDLSFTHTRA CCCCCCCHHHCCCCCCCHHHHCCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCEEECCC PGVNATDGLPATGAGINDNPAGGKISAGGNGTNTSRGSSNNGNLSGRAVLQITPSDDVML CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE YGSYTRGYKGPAFNVFFNHTAPTNAVPIDEETSDAFEIGLKSQFLDNRVQFNAAAFTVTY EECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHCCHHHHHCCCEEEEEEEEEEEE NGFQANNFVLLNGAVVSNLTNAGSVRSKGFEADLLTVPVDGLTLRASAAYADAKVLKFNP CCEECCCEEEECCHHHHCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECC NPSTNAPDARNGTRLPLAPKFTWTLGGSYERDLGGFKVYLDSDFRHVGKQFSDLGESGPI CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECHHHHHHHHHHHCCCCCCE AAYGIWNAGLGFSDAEDLYRLTFHVRNITDKSYALLNVSSGQRLQIPRDADRYFGVSLRA EEEEECCCCCCCCCHHHHEEEEEEEECCCCCCEEEEECCCCCEEECCCCCCHHCCEEEEE KIR ECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA