| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is yeiH [C]
Identifier: 87200462
GI number: 87200462
Start: 2638634
End: 2639713
Strand: Direct
Name: yeiH [C]
Synonym: Saro_2449
Alternate gene names: 87200462
Gene position: 2638634-2639713 (Clockwise)
Preceding gene: 87200460
Following gene: 87200469
Centisome position: 74.09
GC content: 65.46
Gene sequence:
>1080_bases TTGGGCCGTACGGAAATCGACTGGGAGTCCCTGCCTTCGGCTGCGGACTTGTTCGGGGAAATGCACCTTGCCGACCACGG CCCTGCCGAGGCGGAGCCGCGCGAGACCGTGTTCCACGGGCTTGCCATCTGCGCGATCGCCGCAGCGGCGGCTGCGTGGC TTTCCGAACACTACAAGTTCCCGATCATCCTGCTCGGCCTGCTGATCGGGCTTTCGCTGAGTTTCGTCGCGCGCGAGCCG CGAAGCCACAAGGGCCTCGACTTCGCCTCACGGACCTGCCTGCGGCTTGGCGTCGTGCTGCTGGGTCTGCAGGTGACGTT CACGCAGATAGGATCCCTCGGTCCAGCGCCCTTTGCGGCGCTGGTGGTGGTGATGGCGGCAACGTTCTTCGCGGGGCTCG TCGGTGCGCGGGTGGCGGGGCAATCGACCTATACCGGCATACTCGCAGGGGGCGCGACAGCGATCTGCGGGGCAAGCGCG GCGATGGCGCTGTATGGCATCATCGGCAAGGACCGGCTCAACCAGGCGCAATTCGCGATCTCGCTGGTCGGCGTCTCGAT GGCCAGCGCGCTCGCCATGTCGCTCTACCCGATCCTGGCGAGTTACCTGCACTTGTCCGACCAGCAGGCGGGGTTCCTGA TCGGGGCTTCGATTCACGACGTCGCGCAAGCGATCGGCGGGGGCTATGCCTTCTCCGAGACGGCCGGCAGCTATGCGACC ATCGTCAAGCTTTCACGCGTGGCGCTGTTGGCGCCGATCGTGGTGTTGACGAGCCTTGCCATCGGTGATTCGCAGCACGA TGCGGGTCGATCGGCGTGGCGGCGGTTTGCGCTGCCTTGGTTCATCACCGCCTTTTTCCTGGCCGTTCTGCTCAATTCGG TCGTCACCGTGCCGCACGCAGCGGCGGATTTTGCCTTGCGCGCGTCAAAGGGGCTGCTGCTGATCGCGGTGATCGCAACG GCAATGCGTAGCCGGCTCGATCTCTTGATGGAAACCGGGTTGCGTCCTGCGGTGCCGGTGCTGGTCGCGACGGTGGTCAG CTTCTTCATGGCGCTGGGTTCGGCGATGCTGGTGCTCTGA
Upstream 100 bases:
>100_bases ACAGTGCTTTTGCACCGCTTCCCGCTTGCACGATAGCCGACCGGGAGCGTAAGGGAAGCATTATATGACACCGTAGGACA CATACTGGGGAGAGCGTGTC
Downstream 100 bases:
>100_bases GCAGGGATCGAACACGCCACGTTGCGGGCACTCGACAGCCGGTTCAGGACAATTGCGGGCAGACGACCACTTTGCCGCCC CGGCCGCGTCGGGTGAGTGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 359; Mature: 358
Protein sequence:
>359_residues MGRTEIDWESLPSAADLFGEMHLADHGPAEAEPRETVFHGLAICAIAAAAAAWLSEHYKFPIILLGLLIGLSLSFVAREP RSHKGLDFASRTCLRLGVVLLGLQVTFTQIGSLGPAPFAALVVVMAATFFAGLVGARVAGQSTYTGILAGGATAICGASA AMALYGIIGKDRLNQAQFAISLVGVSMASALAMSLYPILASYLHLSDQQAGFLIGASIHDVAQAIGGGYAFSETAGSYAT IVKLSRVALLAPIVVLTSLAIGDSQHDAGRSAWRRFALPWFITAFFLAVLLNSVVTVPHAAADFALRASKGLLLIAVIAT AMRSRLDLLMETGLRPAVPVLVATVVSFFMALGSAMLVL
Sequences:
>Translated_359_residues MGRTEIDWESLPSAADLFGEMHLADHGPAEAEPRETVFHGLAICAIAAAAAAWLSEHYKFPIILLGLLIGLSLSFVAREP RSHKGLDFASRTCLRLGVVLLGLQVTFTQIGSLGPAPFAALVVVMAATFFAGLVGARVAGQSTYTGILAGGATAICGASA AMALYGIIGKDRLNQAQFAISLVGVSMASALAMSLYPILASYLHLSDQQAGFLIGASIHDVAQAIGGGYAFSETAGSYAT IVKLSRVALLAPIVVLTSLAIGDSQHDAGRSAWRRFALPWFITAFFLAVLLNSVVTVPHAAADFALRASKGLLLIAVIAT AMRSRLDLLMETGLRPAVPVLVATVVSFFMALGSAMLVL >Mature_358_residues GRTEIDWESLPSAADLFGEMHLADHGPAEAEPRETVFHGLAICAIAAAAAAWLSEHYKFPIILLGLLIGLSLSFVAREPR SHKGLDFASRTCLRLGVVLLGLQVTFTQIGSLGPAPFAALVVVMAATFFAGLVGARVAGQSTYTGILAGGATAICGASAA MALYGIIGKDRLNQAQFAISLVGVSMASALAMSLYPILASYLHLSDQQAGFLIGASIHDVAQAIGGGYAFSETAGSYATI VKLSRVALLAPIVVLTSLAIGDSQHDAGRSAWRRFALPWFITAFFLAVLLNSVVTVPHAAADFALRASKGLLLIAVIATA MRSRLDLLMETGLRPAVPVLVATVVSFFMALGSAMLVL
Specific function: Unknown
COG id: COG2855
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0324 family [H]
Homologues:
Organism=Escherichia coli, GI1788482, Length=288, Percent_Identity=28.4722222222222, Blast_Score=110, Evalue=1e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018383 [H]
Pfam domain/function: PF03601 Cons_hypoth698 [H]
EC number: NA
Molecular weight: Translated: 37395; Mature: 37264
Theoretical pI: Translated: 7.69; Mature: 7.69
Prosite motif: PS00501 SPASE_I_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRTEIDWESLPSAADLFGEMHLADHGPAEAEPRETVFHGLAICAIAAAAAAWLSEHYKF CCCCCCCHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC PIILLGLLIGLSLSFVAREPRSHKGLDFASRTCLRLGVVLLGLQVTFTQIGSLGPAPFAA HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH LVVVMAATFFAGLVGARVAGQSTYTGILAGGATAICGASAAMALYGIIGKDRLNQAQFAI HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLVGVSMASALAMSLYPILASYLHLSDQQAGFLIGASIHDVAQAIGGGYAFSETAGSYAT HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHCCCCEEHHCCCCHHH IVKLSRVALLAPIVVLTSLAIGDSQHDAGRSAWRRFALPWFITAFFLAVLLNSVVTVPHA HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH AADFALRASKGLLLIAVIATAMRSRLDLLMETGLRPAVPVLVATVVSFFMALGSAMLVL HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure GRTEIDWESLPSAADLFGEMHLADHGPAEAEPRETVFHGLAICAIAAAAAAWLSEHYKF CCCCCCHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC PIILLGLLIGLSLSFVAREPRSHKGLDFASRTCLRLGVVLLGLQVTFTQIGSLGPAPFAA HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH LVVVMAATFFAGLVGARVAGQSTYTGILAGGATAICGASAAMALYGIIGKDRLNQAQFAI HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLVGVSMASALAMSLYPILASYLHLSDQQAGFLIGASIHDVAQAIGGGYAFSETAGSYAT HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHCCCCEEHHCCCCHHH IVKLSRVALLAPIVVLTSLAIGDSQHDAGRSAWRRFALPWFITAFFLAVLLNSVVTVPHA HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH AADFALRASKGLLLIAVIATAMRSRLDLLMETGLRPAVPVLVATVVSFFMALGSAMLVL HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12093901 [H]