| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200434
Identifier: 87200434
GI number: 87200434
Start: 2600398
End: 2602707
Strand: Direct
Name: 87200434
Synonym: Saro_2421
Alternate gene names: NA
Gene position: 2600398-2602707 (Clockwise)
Preceding gene: 87200433
Following gene: 87200435
Centisome position: 73.01
GC content: 68.14
Gene sequence:
>2310_bases ATGATCCGCCTGTCGCGTCGCGGACTGATGGCCGGGGCGGGCGCGCTGGGCCTGTCAGCGACCTTGCGCCCGGCAAGCGC CGCTGCCAGCCCGGAAGCGGCGCCGCCGAACCTGTTCATCGGCACCGGCGGCGATGGCCACACCTTCCCCGGAGCATCGC TGCCCTTCGGCATGGTCCAGCTTTCGCCCGATACAGACACCGCGCGCTGGGACACCTGCTCGGGCTATCACCACGGCGAT GCCTCGCTGCTGGGTTTCTCGCACACGCACCTGTCGGGCACCGGCATCGGCGACATGCTCGACGTTCTGGTCGTCCCTTG TCGCGGCCCCGTTCTGCTCCAGCCAGGAGCGCTCGACCGACCGGACGAAGGCTACCGCCTGCGCTATTCCGACGAGCTGG CCGAGCCCGGCTATTACCGCGTCGCGCTGGAAAACGGCGTCCTGGCCGAGCTGACCGTGACGCGCCGCACCGGCATCCAC CGCTATACCTTCCCGCAAGGTCCAGCACACCTCCTGGTCGACCTGTCGCACCTCGTGATGGAGGGCCCCGGCGAGGCCCC GCTGATCGACGAGGCGCTGCTCGCGCTGGATGAGGACGGCACGCTTTCCGGCACGCGCCGGGTCCACCGCTGGGCCAAGG GCCGACGCTGCTTCTTTGCCATGCAGTTCTCGCGCGCACCGGACCGCGTGGAGTTCTTCACCGACGGCGATGTTCCGGTT CCGGGCATGGCGGCAACCGGCAAGCGGCTGAAGGCCGTGCTGCATTACGACGATGCCGGGGCGGCCCCGCTCGTCGTGCG CTGCGGCATCTCCGCCGTGGACGCACAGGGCGCGCGCGCCAATCTTGCGGCCGAGGCGAAGCACTGGAACTTCGACCGCT ACCGCAAGAATGCCATGCGCGTCTGGTCGCGCGAACTTTCACGCATCCGCGTGGAAGGCGGCAGCACGGACGAGCGCACG GTCATGGCGACAGCGCTCTATCACGCCAGCCTCGGCCCGACGCTGTTCTCCGACGTCGATGGCCGCTACGTCGGGCTGGA CCGCCAGGTCCACAAGCTGGCGCGCGGCGAGGAAAGCTATACCGCCTATTCGTTGTGGGACACCTACCGCGCGTTCCATC CCTTGCAGACGCTGATCCGCCCCGCGCTCGGCGCCACCTTCGCCGCCGATCTCGTGCGGCAGACGCAACAGAGCCCGTTC GGTCCGCCGGTATGGCCGCTGCAGGGGGTTGAAACCGGCTGCATGATCGCCTGGCACAGCGTCTCGGTCCTCGCCGAATC CCGAGCCAAGGGCATTCCGGCCGACTACGCCGCCGCATGGCCCGGGATCGAACGTCGGCTGTTCGACTGGACCACGCCCA ATCTCGACAACAGCCACGGGCTGCGCATCTATGACGAGACCGGCTTCATTCCCGCCGACCAGATCTTCGAATCCGTCTCG CGCGTGCTCGAATACAGCTACGACGACCACGCCGCCGCGCAGATCGCCGATGCCGCAGGCGCCACCGCGCGCGCGGACAG GCTGCGCGAGCGCAGCGGCAACTGGCGCAACGTGTTCGACCCGGCCACCGGCTTTGTTCGCCCGCGTCTGGCCGATGGCT CGTGGGCCGAACCCTTTGCGCCCAACGGCGTCGGCCATTCGTCGCGCTGGCGCGATTTCACCGAGAGCAATTCCTGGCAG GCGACGTTCCTCAACCAGCATGACGTTCCCGGCCTGATCGCGGCAATGGGCGGGGATGCCGCTTTCGAGGCAAAGCTCGA CGCGCTGTTCACCGCTGATTCCACCCTGCCCGAAGGCGCGCCGCCCGATATCTCGGGGCTTGTCGGGCAGTACGCCCACG GCAACGAGCCGAGCCATCACGTCGCATATCTCTATGCCTATTGTGGCGCGGCGTGGAAGACGCAGGCCATGGTGCGCCGT CTCATGGCGGAGATGTACCATGCCCGGCCCGCCGGGATCATCGGTAACGACGATTGCGGTCAGATGAGCGCATGGTTCAT CCTCTCCGCCCTGGGCTTCTACCCGGTCGACCCGGTAAGCGCGACCTACGTGCTTGGCAGCCCGCTGTTCGAACGCGCAG AGGTCGAACTCGGCAAGGGGCGCAAGCTGGTGATCGAGGCGCCCGGCAACCGGGCCAGCACGCCCTATGTCCAGTCCGTG GCGTGGAACGGCGGGCCCTGGGCAAAAGGGTGGATTGCCCATGCCGATCTCGTCCGTGGCGGCACCTTGCGCTTCGAGAT GAGCGGCACGCCGAACAAGGACTTTGCGCGCCTGCCCGAACACCGCCCCAGCCGCACGCAAGCGGCATGA
Upstream 100 bases:
>100_bases CGAAGTTCACCCGCCACTGGTTCGCCTGGGCCAACGGCCTGTTCGGAGAGCTGATGATAGACCTCGCCAACCGCAAGCCG GCATTGCTGGGAGAAGCCGC
Downstream 100 bases:
>100_bases TCGCCGGCGCCGCACTTGCGCTGGCGGTTGCTGCGGTGCTTCCTGCGCCGCTCGATCTGGCGCGGCCGTGCACCGCGGGT GAAGCCGTGGCCTCGGACCT
Product: alpha-1,2-mannosidase
Products: NA
Alternate protein names: Alpha-1 2-Mannosidase Family Protein; Glycoside Hydrolase Family; Glycosyl Hydrolase Family; Sugar Hydrolase; Secreted Protein; Glycoside Hydrolase Family Protein; Outer Membrane Protein; Exported Alpha-1 2-Mannosidase; Alpha-1 2-Mannosidase Protein; Immunoreactive; Antigen; Lipoprotein
Number of amino acids: Translated: 769; Mature: 769
Protein sequence:
>769_residues MIRLSRRGLMAGAGALGLSATLRPASAAASPEAAPPNLFIGTGGDGHTFPGASLPFGMVQLSPDTDTARWDTCSGYHHGD ASLLGFSHTHLSGTGIGDMLDVLVVPCRGPVLLQPGALDRPDEGYRLRYSDELAEPGYYRVALENGVLAELTVTRRTGIH RYTFPQGPAHLLVDLSHLVMEGPGEAPLIDEALLALDEDGTLSGTRRVHRWAKGRRCFFAMQFSRAPDRVEFFTDGDVPV PGMAATGKRLKAVLHYDDAGAAPLVVRCGISAVDAQGARANLAAEAKHWNFDRYRKNAMRVWSRELSRIRVEGGSTDERT VMATALYHASLGPTLFSDVDGRYVGLDRQVHKLARGEESYTAYSLWDTYRAFHPLQTLIRPALGATFAADLVRQTQQSPF GPPVWPLQGVETGCMIAWHSVSVLAESRAKGIPADYAAAWPGIERRLFDWTTPNLDNSHGLRIYDETGFIPADQIFESVS RVLEYSYDDHAAAQIADAAGATARADRLRERSGNWRNVFDPATGFVRPRLADGSWAEPFAPNGVGHSSRWRDFTESNSWQ ATFLNQHDVPGLIAAMGGDAAFEAKLDALFTADSTLPEGAPPDISGLVGQYAHGNEPSHHVAYLYAYCGAAWKTQAMVRR LMAEMYHARPAGIIGNDDCGQMSAWFILSALGFYPVDPVSATYVLGSPLFERAEVELGKGRKLVIEAPGNRASTPYVQSV AWNGGPWAKGWIAHADLVRGGTLRFEMSGTPNKDFARLPEHRPSRTQAA
Sequences:
>Translated_769_residues MIRLSRRGLMAGAGALGLSATLRPASAAASPEAAPPNLFIGTGGDGHTFPGASLPFGMVQLSPDTDTARWDTCSGYHHGD ASLLGFSHTHLSGTGIGDMLDVLVVPCRGPVLLQPGALDRPDEGYRLRYSDELAEPGYYRVALENGVLAELTVTRRTGIH RYTFPQGPAHLLVDLSHLVMEGPGEAPLIDEALLALDEDGTLSGTRRVHRWAKGRRCFFAMQFSRAPDRVEFFTDGDVPV PGMAATGKRLKAVLHYDDAGAAPLVVRCGISAVDAQGARANLAAEAKHWNFDRYRKNAMRVWSRELSRIRVEGGSTDERT VMATALYHASLGPTLFSDVDGRYVGLDRQVHKLARGEESYTAYSLWDTYRAFHPLQTLIRPALGATFAADLVRQTQQSPF GPPVWPLQGVETGCMIAWHSVSVLAESRAKGIPADYAAAWPGIERRLFDWTTPNLDNSHGLRIYDETGFIPADQIFESVS RVLEYSYDDHAAAQIADAAGATARADRLRERSGNWRNVFDPATGFVRPRLADGSWAEPFAPNGVGHSSRWRDFTESNSWQ ATFLNQHDVPGLIAAMGGDAAFEAKLDALFTADSTLPEGAPPDISGLVGQYAHGNEPSHHVAYLYAYCGAAWKTQAMVRR LMAEMYHARPAGIIGNDDCGQMSAWFILSALGFYPVDPVSATYVLGSPLFERAEVELGKGRKLVIEAPGNRASTPYVQSV AWNGGPWAKGWIAHADLVRGGTLRFEMSGTPNKDFARLPEHRPSRTQAA >Mature_769_residues MIRLSRRGLMAGAGALGLSATLRPASAAASPEAAPPNLFIGTGGDGHTFPGASLPFGMVQLSPDTDTARWDTCSGYHHGD ASLLGFSHTHLSGTGIGDMLDVLVVPCRGPVLLQPGALDRPDEGYRLRYSDELAEPGYYRVALENGVLAELTVTRRTGIH RYTFPQGPAHLLVDLSHLVMEGPGEAPLIDEALLALDEDGTLSGTRRVHRWAKGRRCFFAMQFSRAPDRVEFFTDGDVPV PGMAATGKRLKAVLHYDDAGAAPLVVRCGISAVDAQGARANLAAEAKHWNFDRYRKNAMRVWSRELSRIRVEGGSTDERT VMATALYHASLGPTLFSDVDGRYVGLDRQVHKLARGEESYTAYSLWDTYRAFHPLQTLIRPALGATFAADLVRQTQQSPF GPPVWPLQGVETGCMIAWHSVSVLAESRAKGIPADYAAAWPGIERRLFDWTTPNLDNSHGLRIYDETGFIPADQIFESVS RVLEYSYDDHAAAQIADAAGATARADRLRERSGNWRNVFDPATGFVRPRLADGSWAEPFAPNGVGHSSRWRDFTESNSWQ ATFLNQHDVPGLIAAMGGDAAFEAKLDALFTADSTLPEGAPPDISGLVGQYAHGNEPSHHVAYLYAYCGAAWKTQAMVRR LMAEMYHARPAGIIGNDDCGQMSAWFILSALGFYPVDPVSATYVLGSPLFERAEVELGKGRKLVIEAPGNRASTPYVQSV AWNGGPWAKGWIAHADLVRGGTLRFEMSGTPNKDFARLPEHRPSRTQAA
Specific function: Unknown
COG id: COG3537
COG function: function code G; Putative alpha-1,2-mannosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 83607; Mature: 83607
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRLSRRGLMAGAGALGLSATLRPASAAASPEAAPPNLFIGTGGDGHTFPGASLPFGMVQ CEEECCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEE LSPDTDTARWDTCSGYHHGDASLLGFSHTHLSGTGIGDMLDVLVVPCRGPVLLQPGALDR ECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHEECCCCCEEECCCCCCC PDEGYRLRYSDELAEPGYYRVALENGVLAELTVTRRTGIHRYTFPQGPAHLLVDLSHLVM CCCCCEEEECHHCCCCCEEEEEECCCCEEEEEEEHHCCCEEEECCCCHHHHHHHHHHHHH EGPGEAPLIDEALLALDEDGTLSGTRRVHRWAKGRRCFFAMQFSRAPDRVEFFTDGDVPV CCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCEEEEECCCCCC PGMAATGKRLKAVLHYDDAGAAPLVVRCGISAVDAQGARANLAAEAKHWNFDRYRKNAMR CCCCCCCHHEEEEEEECCCCCCCEEEECCCHHCCCCCCCCCCCHHCCCCCHHHHHHHHHH VWSRELSRIRVEGGSTDERTVMATALYHASLGPTLFSDVDGRYVGLDRQVHKLARGEESY HHHHHHHEEEECCCCCCCCEEEHHHHHHHHCCCHHHHCCCCCEECCCHHHHHHHCCCCCC TAYSLWDTYRAFHPLQTLIRPALGATFAADLVRQTQQSPFGPPVWPLQGVETGCMIAWHS EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEHH VSVLAESRAKGIPADYAAAWPGIERRLFDWTTPNLDNSHGLRIYDETGFIPADQIFESVS HHHHHHHHCCCCCCCHHHHCCCHHHHEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHH RVLEYSYDDHAAAQIADAAGATARADRLRERSGNWRNVFDPATGFVRPRLADGSWAEPFA HHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PNGVGHSSRWRDFTESNSWQATFLNQHDVPGLIAAMGGDAAFEAKLDALFTADSTLPEGA CCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHEEEECCCCCCCCC PPDISGLVGQYAHGNEPSHHVAYLYAYCGAAWKTQAMVRRLMAEMYHARPAGIIGNDDCG CCCHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC QMSAWFILSALGFYPVDPVSATYVLGSPLFERAEVELGKGRKLVIEAPGNRASTPYVQSV HHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHEECCCCEEEEECCCCCCCCCCEEEE AWNGGPWAKGWIAHADLVRGGTLRFEMSGTPNKDFARLPEHRPSRTQAA ECCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCHHHHCCCCCCCCCCCC >Mature Secondary Structure MIRLSRRGLMAGAGALGLSATLRPASAAASPEAAPPNLFIGTGGDGHTFPGASLPFGMVQ CEEECCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEE LSPDTDTARWDTCSGYHHGDASLLGFSHTHLSGTGIGDMLDVLVVPCRGPVLLQPGALDR ECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHEECCCCCEEECCCCCCC PDEGYRLRYSDELAEPGYYRVALENGVLAELTVTRRTGIHRYTFPQGPAHLLVDLSHLVM CCCCCEEEECHHCCCCCEEEEEECCCCEEEEEEEHHCCCEEEECCCCHHHHHHHHHHHHH EGPGEAPLIDEALLALDEDGTLSGTRRVHRWAKGRRCFFAMQFSRAPDRVEFFTDGDVPV CCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCEEEEECCCCCC PGMAATGKRLKAVLHYDDAGAAPLVVRCGISAVDAQGARANLAAEAKHWNFDRYRKNAMR CCCCCCCHHEEEEEEECCCCCCCEEEECCCHHCCCCCCCCCCCHHCCCCCHHHHHHHHHH VWSRELSRIRVEGGSTDERTVMATALYHASLGPTLFSDVDGRYVGLDRQVHKLARGEESY HHHHHHHEEEECCCCCCCCEEEHHHHHHHHCCCHHHHCCCCCEECCCHHHHHHHCCCCCC TAYSLWDTYRAFHPLQTLIRPALGATFAADLVRQTQQSPFGPPVWPLQGVETGCMIAWHS EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEHH VSVLAESRAKGIPADYAAAWPGIERRLFDWTTPNLDNSHGLRIYDETGFIPADQIFESVS HHHHHHHHCCCCCCCHHHHCCCHHHHEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHH RVLEYSYDDHAAAQIADAAGATARADRLRERSGNWRNVFDPATGFVRPRLADGSWAEPFA HHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PNGVGHSSRWRDFTESNSWQATFLNQHDVPGLIAAMGGDAAFEAKLDALFTADSTLPEGA CCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHEEEECCCCCCCCC PPDISGLVGQYAHGNEPSHHVAYLYAYCGAAWKTQAMVRRLMAEMYHARPAGIIGNDDCG CCCHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC QMSAWFILSALGFYPVDPVSATYVLGSPLFERAEVELGKGRKLVIEAPGNRASTPYVQSV HHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHEECCCCEEEEECCCCCCCCCCEEEE AWNGGPWAKGWIAHADLVRGGTLRFEMSGTPNKDFARLPEHRPSRTQAA ECCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA