| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200433
Identifier: 87200433
GI number: 87200433
Start: 2598959
End: 2600401
Strand: Direct
Name: 87200433
Synonym: Saro_2420
Alternate gene names: NA
Gene position: 2598959-2600401 (Clockwise)
Preceding gene: 87200432
Following gene: 87200434
Centisome position: 72.97
GC content: 67.43
Gene sequence:
>1443_bases ATGAAGATCGACCGGCGACGGATGATGGCGGGTGCGGCGGCACTGGGCGGGATGGCCGCGCTTGGCCCGATGCGCGCCCT CGCCGCGCAGGCTGCCACTGCGACTGCCCGTCCGGAACCTGCCGACCGCCTGTTCGCCAGCCCCGCCGTGGAACGCGAGA TTGCGCGCGTATCGGCATTGATCGCCGATGCCGACCTCCGGCGGCTCTTCGTCAACTGCTATCCGAACACGCTCGACACC ACGGTCCATCTATCCAGCGTCGAGGGTCGTCCCGACGCTTTCGTCATCACCGGCGACATCGACTGCATGTGGTTGCGCGA CAGTTCGGCGCAGCTCAATCCCTACCTGCACCTCGTGCGCGAGGACGAGGCGTTGCGCGGTCTGTTCCGTGGGCTGATCG CGCGGCAGGCGCGCTCGATCCTGATCGACCCCTATGCCAATGCATTCATGCGCGACCCGTCGGCAAGCACGAACCTGCCA TGGGCGCTCGCCGACGATACCGAGATGAAGCCGGGCGTGGCGGAGCGGAAGTGGGAAGTGGATTCGCTCTGCTACCCGAT GCGCCTTGCCCATGACTACTGGAAGGCGAGCGGCGACACCGCGCCGTTCGACGCGCTCTGGGCCGAGGCGGCCTGGGCCA GCATCCGCACCTTCCGCGAACAGCAGCGCAAGGACGACCCCGGCCCCTACCGCTTCCTGCGCCGCGACAAGCTGGCGACC GAGACGCAGATCCTTGGCGGCTATGGCGCGCCGACGCGCAAGGTGGGCATGATCCACAGCATGTATCGCCCTTCCGACGA TGCCTGCGTGTTTCCCTTCCTGGTGCCGTCGAACCTCTTCGCCGTCGCCGCCCTGCGCAAGCTGGCGGCGCTGGCGGGTG CGGTGCAGCAGGCCAAGCTTGCCAGTGCCGCGCTGGACCTGGCGCGCGAGGTGGAGCTGGCCACCTATGCCAACGGCACG ATCATCGATCCGGCCAGCAACGAACGGCTCTGGGCCTACGAGGTCGACGGCTTCGGCAACGGACACTTCATGGACGATGC CAACGTGCCCAGCCTGTCGAGCCTTGCCTATCTCGGCGCGGTCCCTTCGGACGATCCGCTGTTCCTGCGCACCCGCGCCG CCGCGTGGAGCGAGCGCAATCCGTACTTCTTCAAGGGCACCGCCGCGGAAGGCATCGGCGGCCCCCACGCCGGGCTGCGC ATGATCTGGCCGATGGCAATCACCATGCGCGCGCTGTCGAGCGACGACGACGCAACGATCCGCCAGTGCCTGGCCATGCT CAAGGCCAGCCACGCCGGCACCTTCTTCATCCACGAGGCTTTCGACCAGGACGATCCGGCGAAGTTCACCCGCCACTGGT TCGCCTGGGCCAACGGCCTGTTCGGAGAGCTGATGATAGACCTCGCCAACCGCAAGCCGGCATTGCTGGGAGAAGCCGCA TGA
Upstream 100 bases:
>100_bases GTCCCGGCACCTACCGCCTGTTCATCGGCGGCGGGCAACCCGGCGCGGCATCCGGCGCAGAGATTTCCTTCACCATAGAG GGCACGCTGGAGTTGCCGAA
Downstream 100 bases:
>100_bases TCCGCCTGTCGCGTCGCGGACTGATGGCCGGGGCGGGCGCGCTGGGCCTGTCAGCGACCTTGCGCCCGGCAAGCGCCGCT GCCAGCCCGGAAGCGGCGCC
Product: twin-arginine translocation pathway signal protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 480; Mature: 480
Protein sequence:
>480_residues MKIDRRRMMAGAAALGGMAALGPMRALAAQAATATARPEPADRLFASPAVEREIARVSALIADADLRRLFVNCYPNTLDT TVHLSSVEGRPDAFVITGDIDCMWLRDSSAQLNPYLHLVREDEALRGLFRGLIARQARSILIDPYANAFMRDPSASTNLP WALADDTEMKPGVAERKWEVDSLCYPMRLAHDYWKASGDTAPFDALWAEAAWASIRTFREQQRKDDPGPYRFLRRDKLAT ETQILGGYGAPTRKVGMIHSMYRPSDDACVFPFLVPSNLFAVAALRKLAALAGAVQQAKLASAALDLAREVELATYANGT IIDPASNERLWAYEVDGFGNGHFMDDANVPSLSSLAYLGAVPSDDPLFLRTRAAAWSERNPYFFKGTAAEGIGGPHAGLR MIWPMAITMRALSSDDDATIRQCLAMLKASHAGTFFIHEAFDQDDPAKFTRHWFAWANGLFGELMIDLANRKPALLGEAA
Sequences:
>Translated_480_residues MKIDRRRMMAGAAALGGMAALGPMRALAAQAATATARPEPADRLFASPAVEREIARVSALIADADLRRLFVNCYPNTLDT TVHLSSVEGRPDAFVITGDIDCMWLRDSSAQLNPYLHLVREDEALRGLFRGLIARQARSILIDPYANAFMRDPSASTNLP WALADDTEMKPGVAERKWEVDSLCYPMRLAHDYWKASGDTAPFDALWAEAAWASIRTFREQQRKDDPGPYRFLRRDKLAT ETQILGGYGAPTRKVGMIHSMYRPSDDACVFPFLVPSNLFAVAALRKLAALAGAVQQAKLASAALDLAREVELATYANGT IIDPASNERLWAYEVDGFGNGHFMDDANVPSLSSLAYLGAVPSDDPLFLRTRAAAWSERNPYFFKGTAAEGIGGPHAGLR MIWPMAITMRALSSDDDATIRQCLAMLKASHAGTFFIHEAFDQDDPAKFTRHWFAWANGLFGELMIDLANRKPALLGEAA >Mature_480_residues MKIDRRRMMAGAAALGGMAALGPMRALAAQAATATARPEPADRLFASPAVEREIARVSALIADADLRRLFVNCYPNTLDT TVHLSSVEGRPDAFVITGDIDCMWLRDSSAQLNPYLHLVREDEALRGLFRGLIARQARSILIDPYANAFMRDPSASTNLP WALADDTEMKPGVAERKWEVDSLCYPMRLAHDYWKASGDTAPFDALWAEAAWASIRTFREQQRKDDPGPYRFLRRDKLAT ETQILGGYGAPTRKVGMIHSMYRPSDDACVFPFLVPSNLFAVAALRKLAALAGAVQQAKLASAALDLAREVELATYANGT IIDPASNERLWAYEVDGFGNGHFMDDANVPSLSSLAYLGAVPSDDPLFLRTRAAAWSERNPYFFKGTAAEGIGGPHAGLR MIWPMAITMRALSSDDDATIRQCLAMLKASHAGTFFIHEAFDQDDPAKFTRHWFAWANGLFGELMIDLANRKPALLGEAA
Specific function: Unknown
COG id: COG3538
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52703; Mature: 52703
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIDRRRMMAGAAALGGMAALGPMRALAAQAATATARPEPADRLFASPAVEREIARVSAL CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHH IADADLRRLFVNCYPNTLDTTVHLSSVEGRPDAFVITGDIDCMWLRDSSAQLNPYLHLVR HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEECCCEEEEEECCCCCCCCEEEEEE EDEALRGLFRGLIARQARSILIDPYANAFMRDPSASTNLPWALADDTEMKPGVAERKWEV CCHHHHHHHHHHHHHHHHHEEECCHHHHHHCCCCCCCCCCEEECCCCCCCCCCHHCCCCH DSLCYPMRLAHDYWKASGDTAPFDALWAEAAWASIRTFREQQRKDDPGPYRFLRRDKLAT HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH ETQILGGYGAPTRKVGMIHSMYRPSDDACVFPFLVPSNLFAVAALRKLAALAGAVQQAKL HHHHHCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH ASAALDLAREVELATYANGTIIDPASNERLWAYEVDGFGNGHFMDDANVPSLSSLAYLGA HHHHHHHHHHHHHEEECCCEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHCC VPSDDPLFLRTRAAAWSERNPYFFKGTAAEGIGGPHAGLRMIWPMAITMRALSSDDDATI CCCCCCEEEEEEHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHH RQCLAMLKASHAGTFFIHEAFDQDDPAKFTRHWFAWANGLFGELMIDLANRKPALLGEAA HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MKIDRRRMMAGAAALGGMAALGPMRALAAQAATATARPEPADRLFASPAVEREIARVSAL CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHH IADADLRRLFVNCYPNTLDTTVHLSSVEGRPDAFVITGDIDCMWLRDSSAQLNPYLHLVR HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEECCCEEEEEECCCCCCCCEEEEEE EDEALRGLFRGLIARQARSILIDPYANAFMRDPSASTNLPWALADDTEMKPGVAERKWEV CCHHHHHHHHHHHHHHHHHEEECCHHHHHHCCCCCCCCCCEEECCCCCCCCCCHHCCCCH DSLCYPMRLAHDYWKASGDTAPFDALWAEAAWASIRTFREQQRKDDPGPYRFLRRDKLAT HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH ETQILGGYGAPTRKVGMIHSMYRPSDDACVFPFLVPSNLFAVAALRKLAALAGAVQQAKL HHHHHCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH ASAALDLAREVELATYANGTIIDPASNERLWAYEVDGFGNGHFMDDANVPSLSSLAYLGA HHHHHHHHHHHHHEEECCCEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHCC VPSDDPLFLRTRAAAWSERNPYFFKGTAAEGIGGPHAGLRMIWPMAITMRALSSDDDATI CCCCCCEEEEEEHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHH RQCLAMLKASHAGTFFIHEAFDQDDPAKFTRHWFAWANGLFGELMIDLANRKPALLGEAA HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA