Definition Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome.
Accession NC_007794
Length 3,561,584

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The map label for this gene is 87200423

Identifier: 87200423

GI number: 87200423

Start: 2578324

End: 2581104

Strand: Direct

Name: 87200423

Synonym: Saro_2410

Alternate gene names: NA

Gene position: 2578324-2581104 (Clockwise)

Preceding gene: 87200418

Following gene: 87200430

Centisome position: 72.39

GC content: 63.43

Gene sequence:

>2781_bases
ATGATTGGACCCAACACATCCATTCGGGACCAAGGAGGGGGCCGGCCTTACACCGGCGAAATCTTTGGCGCGCACTGCGC
CAAGCTGTTGGGGGAAATACGCATGACACTGCGGCATCTTCTGTTGATCACCACGACTGCCATGGTGGCCGCGCCCGTCG
CCGCCCAGGCACAATCCGTTTCAAGCAACGAGGCTGACGGCATCGTCGTCACCGGCATTCGCGCCTCGCTGCGCGACGCC
ATCGAGATCAAGCGCAAGGCCAGCTCGATCGTCGACGTGATCAGCGCCGAAGATGTCGGCAAGTTCCCCGACGCTAACGT
CGCTGACTCGCTCGCCCGTCTTCCCGGCGTCACCGTCGACCGCCAGTTCGGCGAAGGCGAACAGCTTTCGATCGCAGGCG
TCGAACCCGCCCTCAACCGCCTGACCATCGACGGCCACTCGGTCGCCTCGGCCGACTGGGGCGGCAACCCCTCCGACCGT
TCGAGCCGCTCGTTCAACTACTCGCTGCTGTCGCCCTCGATCATCAGCCAGGCCGTGGTCTACAAGACCCCCGAAGCCCG
CCTCCAGGAAGGCGCTATCGGCGCGTCCGTCGACGTCGTCACGCGCAAGCCGCTCGACCTCGACTCCAACACCTTCCGCT
TCAACGGCGGCTACGAATACAACGACCGCGCCGATCGCGGCAGCATCCGCGGCAACGCGCTCTATAGCTGGAAGAACGCC
GACGAAACCATCGGCATCCTTGCCGCCGCCAACTACGACAAGGAACAACTGAGCCGCGCTGGCGTGGCGGTCTACTGGTA
CCGCACCGGCCAGGCCCTGCTGGACAACGCCCCGTCGACCGCCACCGTCAACGGCAAGGCGATCACCGACCTGACCGAAG
ACGAGCGCAGCGAATTCGCCAGCTCGCGCTTCGCCTCGTTCCTCGCGCGCGAATTCTTCAAGCAGGAACGCGAACGCATC
GGCTTCAACGGCGCGATCCAGGTCCGTCCGTCCGACAACCTGAAGCTGACCGGCACGGCCCTGATCATTCGCGGCAACTA
CGACAACGTCTCGAACTCGATGTACACGTATGGGTACGAAGGTTCGCGCCTCATCTCGGCCCAGTTCAGCGGCGGTCTCG
TGACCCAGGCGACCTTCTCGGGCATCGCGGACGGCCAGACCGGCTCGACCGGCCAGCTCGACACGCTCTATCGCCGCACC
CGCGTGAAGAACGACACCTATTCGCTTGCCTACGAATGGGAACCCGACGGCTGGCACGTGACCGGCAACGTCGGCTACAC
CCGCGCTTCGGGCGGCAAGGACCCCGAATACCTGCTCGACTTCCGCACCCAGCAGGGCTTCACTTCGGGTGCTAACGGCC
GCAACACGACCGTCGACTGGGACAGCCCGGCGACCGACCCGACCAAGTGGCTGAGCAATTACACCGCAAACGGCGGCGAG
AACATCACCGCCTCCGACGGCCGCACCTTCTTCGGTCGCCAGATCGGCGGCATCCCGACCAAGTCCGGCTTCACGCTGGA
CAAGGAATGGTTCACCGAAGCCAATGCCGTGCATGACCTGAACGCCGGGCCGTTCACCCAGCTGCTGTTCGGCGCGCGCT
TCACTTCGCACGAAAACAGCAACACGACCTACAGCAACGCGATCTTCACCGACCAGGACTTCACCCTGGCGGATCTTGAC
TACAACGTGCTGCCTTCGGGTCTCTATGATGGCCTTGGCACCTCGGGCAACGGTGCACCCTATGTCGGCATGGACAAGGA
CGGCATCATCGCCGCCCTGGCCAAGTACGGCAATTTCACCGACGACCGCGGCCTGGCGAAGGGCGAATACTGGCTGGTGA
AGGAAAAGATCGCGGCCGGCTATGCCCAGGCGAACTTCGAAACCGGCAAGCTGCGCGGCAACGTCGGCGTCCGCTTCGTC
AGCACCAAGACGGAATCGAACTTCTACGCGCAGAGCGGTTCGACCGTTCAGCTCGTGCAGTACAACAAGACCGACAACCG
GTTCCTGCCCTCGATCAACGTGATCTACGACGCGGGCGATACGGTTGTGCTGCGTGCAGCGGCGGCCAAGGTCATGTCGC
GTCCGCGCTACTCCGACCTTGCCGGCTACCTTTCGTTGACCGACTCCACCTTGAGCGGCAGCGGCGGCAACCCCGACCTG
AAGCCCTACCTTGCGACCAACTTCGGGTTCTCGGCCGAATGGTACTTCGCACCGGGCAGCTTCCTTTCGGGCGAAGTGTT
CTACCGCGACATCTCGAACTACGTGGGCAACGAGACGCTCGAGACCGAACTGACCAACCCGATCACCGGCAACACCCTCA
CCTATGCGGTGTCGCGCCCGGTAAACGGCGGCAAGGCATCGGTCACCGGCTTCTCGATCTCGGGCAACACCAACCTCGCC
TGGGGCTTCGGCATCCAGGCCTCCTACACCTTCGCCGATGCCGAGACGAGCAAGGCGGAAGGCCTGCCCTTCCTGTCGCG
CAACACGATCCAGATCTCGCCCTACTACGAGAACGGACCGTTCCAGGCGCGCGTCAGCTACAACCGTCGTTCGAAGTACT
TCTACCGCTTCGGCCGCCAGCAGTCGCAGGACTACACCGACGCCTACCGCCAGCTTGACGCGCAGGTCTCCTACGCGATC
AACGAGAACCTGAGCGTGACGGCGACGGCTTCGAACCTGCTGGACGAGACGTACTACCAGTACAGCTCGACCAAGAACGC
GCCGACTTCGATCTACAAGAATGGCCGCGTCTATTCGGCCAGCATGACTGCGAAGTTCTAA

Upstream 100 bases:

>100_bases
AATGCAAACAGGTTACCAGCGTATGTCCAGATAGCATTTTTCGTTGGAATATCGGCGCCACAGATATAACATACGCATAA
CCAAATAGGGTGTTGGTAAC

Downstream 100 bases:

>100_bases
GAACCACCACTGCGCTCCCAGGTGGCTTGCCCGCTCCCCGAAAGGGGGGCGGGCATTTTTCGTTGGTGACCGCGGTACGT
GCGCGCGTGAACGCCTCCGG

Product: TonB-dependent receptor

Products: NA

Alternate protein names: Nb-Dependent Receptor; NB-Dependent Receptor Plug; NB-Dependent Outer Membrane Receptor; Nb-Dependent Outer Membrane Receptor Protein; NB-Dependent Receptor Subfamily; Outer Membrane Protein; NB-Dependent Receptor Subfamily Protein; NB-Dependent Outer Membrane Receptor Protein; Outer Membrane Insertion C-Terminal Signal; Nucleoside Diphosphate Kinase; NB-Dependent Receptor-Like Protein; NB-Dependent Maltose Outer Membrane Transporter MalA; NB Dependent Receptor For Iron Chelates; NB-Dependent Receptor Protein; 50S Ribosomal Protein L; NB-Dependent Outer Membrane Ferripyoverdine Receptor; NB-Dependent Receptor Plug Domain; NB Dependent Receptor-Related Protein; 3-Dehydroquinate Synthase; DEAD/DEAH Box Helicase-Like; Peptidase; NB Dependent Receptor Protein; Argininosuccinate Synthase; NB-Dependent Receptor Domain Protein

Number of amino acids: Translated: 926; Mature: 926

Protein sequence:

>926_residues
MIGPNTSIRDQGGGRPYTGEIFGAHCAKLLGEIRMTLRHLLLITTTAMVAAPVAAQAQSVSSNEADGIVVTGIRASLRDA
IEIKRKASSIVDVISAEDVGKFPDANVADSLARLPGVTVDRQFGEGEQLSIAGVEPALNRLTIDGHSVASADWGGNPSDR
SSRSFNYSLLSPSIISQAVVYKTPEARLQEGAIGASVDVVTRKPLDLDSNTFRFNGGYEYNDRADRGSIRGNALYSWKNA
DETIGILAAANYDKEQLSRAGVAVYWYRTGQALLDNAPSTATVNGKAITDLTEDERSEFASSRFASFLAREFFKQERERI
GFNGAIQVRPSDNLKLTGTALIIRGNYDNVSNSMYTYGYEGSRLISAQFSGGLVTQATFSGIADGQTGSTGQLDTLYRRT
RVKNDTYSLAYEWEPDGWHVTGNVGYTRASGGKDPEYLLDFRTQQGFTSGANGRNTTVDWDSPATDPTKWLSNYTANGGE
NITASDGRTFFGRQIGGIPTKSGFTLDKEWFTEANAVHDLNAGPFTQLLFGARFTSHENSNTTYSNAIFTDQDFTLADLD
YNVLPSGLYDGLGTSGNGAPYVGMDKDGIIAALAKYGNFTDDRGLAKGEYWLVKEKIAAGYAQANFETGKLRGNVGVRFV
STKTESNFYAQSGSTVQLVQYNKTDNRFLPSINVIYDAGDTVVLRAAAAKVMSRPRYSDLAGYLSLTDSTLSGSGGNPDL
KPYLATNFGFSAEWYFAPGSFLSGEVFYRDISNYVGNETLETELTNPITGNTLTYAVSRPVNGGKASVTGFSISGNTNLA
WGFGIQASYTFADAETSKAEGLPFLSRNTIQISPYYENGPFQARVSYNRRSKYFYRFGRQQSQDYTDAYRQLDAQVSYAI
NENLSVTATASNLLDETYYQYSSTKNAPTSIYKNGRVYSASMTAKF

Sequences:

>Translated_926_residues
MIGPNTSIRDQGGGRPYTGEIFGAHCAKLLGEIRMTLRHLLLITTTAMVAAPVAAQAQSVSSNEADGIVVTGIRASLRDA
IEIKRKASSIVDVISAEDVGKFPDANVADSLARLPGVTVDRQFGEGEQLSIAGVEPALNRLTIDGHSVASADWGGNPSDR
SSRSFNYSLLSPSIISQAVVYKTPEARLQEGAIGASVDVVTRKPLDLDSNTFRFNGGYEYNDRADRGSIRGNALYSWKNA
DETIGILAAANYDKEQLSRAGVAVYWYRTGQALLDNAPSTATVNGKAITDLTEDERSEFASSRFASFLAREFFKQERERI
GFNGAIQVRPSDNLKLTGTALIIRGNYDNVSNSMYTYGYEGSRLISAQFSGGLVTQATFSGIADGQTGSTGQLDTLYRRT
RVKNDTYSLAYEWEPDGWHVTGNVGYTRASGGKDPEYLLDFRTQQGFTSGANGRNTTVDWDSPATDPTKWLSNYTANGGE
NITASDGRTFFGRQIGGIPTKSGFTLDKEWFTEANAVHDLNAGPFTQLLFGARFTSHENSNTTYSNAIFTDQDFTLADLD
YNVLPSGLYDGLGTSGNGAPYVGMDKDGIIAALAKYGNFTDDRGLAKGEYWLVKEKIAAGYAQANFETGKLRGNVGVRFV
STKTESNFYAQSGSTVQLVQYNKTDNRFLPSINVIYDAGDTVVLRAAAAKVMSRPRYSDLAGYLSLTDSTLSGSGGNPDL
KPYLATNFGFSAEWYFAPGSFLSGEVFYRDISNYVGNETLETELTNPITGNTLTYAVSRPVNGGKASVTGFSISGNTNLA
WGFGIQASYTFADAETSKAEGLPFLSRNTIQISPYYENGPFQARVSYNRRSKYFYRFGRQQSQDYTDAYRQLDAQVSYAI
NENLSVTATASNLLDETYYQYSSTKNAPTSIYKNGRVYSASMTAKF
>Mature_926_residues
MIGPNTSIRDQGGGRPYTGEIFGAHCAKLLGEIRMTLRHLLLITTTAMVAAPVAAQAQSVSSNEADGIVVTGIRASLRDA
IEIKRKASSIVDVISAEDVGKFPDANVADSLARLPGVTVDRQFGEGEQLSIAGVEPALNRLTIDGHSVASADWGGNPSDR
SSRSFNYSLLSPSIISQAVVYKTPEARLQEGAIGASVDVVTRKPLDLDSNTFRFNGGYEYNDRADRGSIRGNALYSWKNA
DETIGILAAANYDKEQLSRAGVAVYWYRTGQALLDNAPSTATVNGKAITDLTEDERSEFASSRFASFLAREFFKQERERI
GFNGAIQVRPSDNLKLTGTALIIRGNYDNVSNSMYTYGYEGSRLISAQFSGGLVTQATFSGIADGQTGSTGQLDTLYRRT
RVKNDTYSLAYEWEPDGWHVTGNVGYTRASGGKDPEYLLDFRTQQGFTSGANGRNTTVDWDSPATDPTKWLSNYTANGGE
NITASDGRTFFGRQIGGIPTKSGFTLDKEWFTEANAVHDLNAGPFTQLLFGARFTSHENSNTTYSNAIFTDQDFTLADLD
YNVLPSGLYDGLGTSGNGAPYVGMDKDGIIAALAKYGNFTDDRGLAKGEYWLVKEKIAAGYAQANFETGKLRGNVGVRFV
STKTESNFYAQSGSTVQLVQYNKTDNRFLPSINVIYDAGDTVVLRAAAAKVMSRPRYSDLAGYLSLTDSTLSGSGGNPDL
KPYLATNFGFSAEWYFAPGSFLSGEVFYRDISNYVGNETLETELTNPITGNTLTYAVSRPVNGGKASVTGFSISGNTNLA
WGFGIQASYTFADAETSKAEGLPFLSRNTIQISPYYENGPFQARVSYNRRSKYFYRFGRQQSQDYTDAYRQLDAQVSYAI
NENLSVTATASNLLDETYYQYSSTKNAPTSIYKNGRVYSASMTAKF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 100693; Mature: 100693

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGPNTSIRDQGGGRPYTGEIFGAHCAKLLGEIRMTLRHLLLITTTAMVAAPVAAQAQSV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SSNEADGIVVTGIRASLRDAIEIKRKASSIVDVISAEDVGKFPDANVADSLARLPGVTVD
CCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEE
RQFGEGEQLSIAGVEPALNRLTIDGHSVASADWGGNPSDRSSRSFNYSLLSPSIISQAVV
CCCCCCCEEEEECCCCCHHEEEECCCCEECCCCCCCCCCCCCCCEEEEECCHHHHHHHHE
YKTPEARLQEGAIGASVDVVTRKPLDLDSNTFRFNGGYEYNDRADRGSIRGNALYSWKNA
EECCHHHHHCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCC
DETIGILAAANYDKEQLSRAGVAVYWYRTGQALLDNAPSTATVNGKAITDLTEDERSEFA
CCEEEEEEECCCCHHHHHHCCEEEEEEECCHHHHCCCCCEEEECCCEEECCCHHHHHHHH
SSRFASFLAREFFKQERERIGFNGAIQVRPSDNLKLTGTALIIRGNYDNVSNSMYTYGYE
HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEEEEEECCCCCCCCCEEEECCC
GSRLISAQFSGGLVTQATFSGIADGQTGSTGQLDTLYRRTRVKNDTYSLAYEWEPDGWHV
CCEEEEEECCCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCEEE
TGNVGYTRASGGKDPEYLLDFRTQQGFTSGANGRNTTVDWDSPATDPTKWLSNYTANGGE
ECCCCEEECCCCCCHHHHEEEHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHCCCCCCCC
NITASDGRTFFGRQIGGIPTKSGFTLDKEWFTEANAVHDLNAGPFTQLLFGARFTSHENS
EEECCCCCEEECHHCCCCCCCCCCEECHHHHCCCCCEEECCCCHHHHHHHHHHCCCCCCC
NTTYSNAIFTDQDFTLADLDYNVLPSGLYDGLGTSGNGAPYVGMDKDGIIAALAKYGNFT
CCEECCEEEECCCCEEEECCCCCCCCHHHHCCCCCCCCCCEECCCCCCHHHHHHHHCCCC
DDRGLAKGEYWLVKEKIAAGYAQANFETGKLRGNVGVRFVSTKTESNFYAQSGSTVQLVQ
CCCCCCCCCEEEEEHHHHCCHHHCCCCCCEEECCCEEEEEEECCCCCEEECCCCEEEEEE
YNKTDNRFLPSINVIYDAGDTVVLRAAAAKVMSRPRYSDLAGYLSLTDSTLSGSGGNPDL
ECCCCCCCCCCEEEEEECCCEEEEHHHHHHHHCCCCHHHHHHEEEEECCCCCCCCCCCCC
KPYLATNFGFSAEWYFAPGSFLSGEVFYRDISNYVGNETLETELTNPITGNTLTYAVSRP
CCEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHHCCCCCCCCEEEEEEECC
VNGGKASVTGFSISGNTNLAWGFGIQASYTFADAETSKAEGLPFLSRNTIQISPYYENGP
CCCCCEEEEEEEECCCCEEEEEECCEEEEEECCCCCCHHCCCCEECCCEEEEEEEECCCC
FQARVSYNRRSKYFYRFGRQQSQDYTDAYRQLDAQVSYAINENLSVTATASNLLDETYYQ
EEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHCEEEEEECCCCEEEEEHHHHHHHHHHH
YSSTKNAPTSIYKNGRVYSASMTAKF
HCCCCCCCHHHCCCCEEEEEEEEECC
>Mature Secondary Structure
MIGPNTSIRDQGGGRPYTGEIFGAHCAKLLGEIRMTLRHLLLITTTAMVAAPVAAQAQSV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SSNEADGIVVTGIRASLRDAIEIKRKASSIVDVISAEDVGKFPDANVADSLARLPGVTVD
CCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEE
RQFGEGEQLSIAGVEPALNRLTIDGHSVASADWGGNPSDRSSRSFNYSLLSPSIISQAVV
CCCCCCCEEEEECCCCCHHEEEECCCCEECCCCCCCCCCCCCCCEEEEECCHHHHHHHHE
YKTPEARLQEGAIGASVDVVTRKPLDLDSNTFRFNGGYEYNDRADRGSIRGNALYSWKNA
EECCHHHHHCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCC
DETIGILAAANYDKEQLSRAGVAVYWYRTGQALLDNAPSTATVNGKAITDLTEDERSEFA
CCEEEEEEECCCCHHHHHHCCEEEEEEECCHHHHCCCCCEEEECCCEEECCCHHHHHHHH
SSRFASFLAREFFKQERERIGFNGAIQVRPSDNLKLTGTALIIRGNYDNVSNSMYTYGYE
HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEEEEEECCCCCCCCCEEEECCC
GSRLISAQFSGGLVTQATFSGIADGQTGSTGQLDTLYRRTRVKNDTYSLAYEWEPDGWHV
CCEEEEEECCCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCEEE
TGNVGYTRASGGKDPEYLLDFRTQQGFTSGANGRNTTVDWDSPATDPTKWLSNYTANGGE
ECCCCEEECCCCCCHHHHEEEHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHCCCCCCCC
NITASDGRTFFGRQIGGIPTKSGFTLDKEWFTEANAVHDLNAGPFTQLLFGARFTSHENS
EEECCCCCEEECHHCCCCCCCCCCEECHHHHCCCCCEEECCCCHHHHHHHHHHCCCCCCC
NTTYSNAIFTDQDFTLADLDYNVLPSGLYDGLGTSGNGAPYVGMDKDGIIAALAKYGNFT
CCEECCEEEECCCCEEEECCCCCCCCHHHHCCCCCCCCCCEECCCCCCHHHHHHHHCCCC
DDRGLAKGEYWLVKEKIAAGYAQANFETGKLRGNVGVRFVSTKTESNFYAQSGSTVQLVQ
CCCCCCCCCEEEEEHHHHCCHHHCCCCCCEEECCCEEEEEEECCCCCEEECCCCEEEEEE
YNKTDNRFLPSINVIYDAGDTVVLRAAAAKVMSRPRYSDLAGYLSLTDSTLSGSGGNPDL
ECCCCCCCCCCEEEEEECCCEEEEHHHHHHHHCCCCHHHHHHEEEEECCCCCCCCCCCCC
KPYLATNFGFSAEWYFAPGSFLSGEVFYRDISNYVGNETLETELTNPITGNTLTYAVSRP
CCEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHHCCCCCCCCEEEEEEECC
VNGGKASVTGFSISGNTNLAWGFGIQASYTFADAETSKAEGLPFLSRNTIQISPYYENGP
CCCCCEEEEEEEECCCCEEEEEECCEEEEEECCCCCCHHCCCCEECCCEEEEEEEECCCC
FQARVSYNRRSKYFYRFGRQQSQDYTDAYRQLDAQVSYAINENLSVTATASNLLDETYYQ
EEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHCEEEEEECCCCEEEEEHHHHHHHHHHH
YSSTKNAPTSIYKNGRVYSASMTAKF
HCCCCCCCHHHCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA