| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200423
Identifier: 87200423
GI number: 87200423
Start: 2578324
End: 2581104
Strand: Direct
Name: 87200423
Synonym: Saro_2410
Alternate gene names: NA
Gene position: 2578324-2581104 (Clockwise)
Preceding gene: 87200418
Following gene: 87200430
Centisome position: 72.39
GC content: 63.43
Gene sequence:
>2781_bases ATGATTGGACCCAACACATCCATTCGGGACCAAGGAGGGGGCCGGCCTTACACCGGCGAAATCTTTGGCGCGCACTGCGC CAAGCTGTTGGGGGAAATACGCATGACACTGCGGCATCTTCTGTTGATCACCACGACTGCCATGGTGGCCGCGCCCGTCG CCGCCCAGGCACAATCCGTTTCAAGCAACGAGGCTGACGGCATCGTCGTCACCGGCATTCGCGCCTCGCTGCGCGACGCC ATCGAGATCAAGCGCAAGGCCAGCTCGATCGTCGACGTGATCAGCGCCGAAGATGTCGGCAAGTTCCCCGACGCTAACGT CGCTGACTCGCTCGCCCGTCTTCCCGGCGTCACCGTCGACCGCCAGTTCGGCGAAGGCGAACAGCTTTCGATCGCAGGCG TCGAACCCGCCCTCAACCGCCTGACCATCGACGGCCACTCGGTCGCCTCGGCCGACTGGGGCGGCAACCCCTCCGACCGT TCGAGCCGCTCGTTCAACTACTCGCTGCTGTCGCCCTCGATCATCAGCCAGGCCGTGGTCTACAAGACCCCCGAAGCCCG CCTCCAGGAAGGCGCTATCGGCGCGTCCGTCGACGTCGTCACGCGCAAGCCGCTCGACCTCGACTCCAACACCTTCCGCT TCAACGGCGGCTACGAATACAACGACCGCGCCGATCGCGGCAGCATCCGCGGCAACGCGCTCTATAGCTGGAAGAACGCC GACGAAACCATCGGCATCCTTGCCGCCGCCAACTACGACAAGGAACAACTGAGCCGCGCTGGCGTGGCGGTCTACTGGTA CCGCACCGGCCAGGCCCTGCTGGACAACGCCCCGTCGACCGCCACCGTCAACGGCAAGGCGATCACCGACCTGACCGAAG ACGAGCGCAGCGAATTCGCCAGCTCGCGCTTCGCCTCGTTCCTCGCGCGCGAATTCTTCAAGCAGGAACGCGAACGCATC GGCTTCAACGGCGCGATCCAGGTCCGTCCGTCCGACAACCTGAAGCTGACCGGCACGGCCCTGATCATTCGCGGCAACTA CGACAACGTCTCGAACTCGATGTACACGTATGGGTACGAAGGTTCGCGCCTCATCTCGGCCCAGTTCAGCGGCGGTCTCG TGACCCAGGCGACCTTCTCGGGCATCGCGGACGGCCAGACCGGCTCGACCGGCCAGCTCGACACGCTCTATCGCCGCACC CGCGTGAAGAACGACACCTATTCGCTTGCCTACGAATGGGAACCCGACGGCTGGCACGTGACCGGCAACGTCGGCTACAC CCGCGCTTCGGGCGGCAAGGACCCCGAATACCTGCTCGACTTCCGCACCCAGCAGGGCTTCACTTCGGGTGCTAACGGCC GCAACACGACCGTCGACTGGGACAGCCCGGCGACCGACCCGACCAAGTGGCTGAGCAATTACACCGCAAACGGCGGCGAG AACATCACCGCCTCCGACGGCCGCACCTTCTTCGGTCGCCAGATCGGCGGCATCCCGACCAAGTCCGGCTTCACGCTGGA CAAGGAATGGTTCACCGAAGCCAATGCCGTGCATGACCTGAACGCCGGGCCGTTCACCCAGCTGCTGTTCGGCGCGCGCT TCACTTCGCACGAAAACAGCAACACGACCTACAGCAACGCGATCTTCACCGACCAGGACTTCACCCTGGCGGATCTTGAC TACAACGTGCTGCCTTCGGGTCTCTATGATGGCCTTGGCACCTCGGGCAACGGTGCACCCTATGTCGGCATGGACAAGGA CGGCATCATCGCCGCCCTGGCCAAGTACGGCAATTTCACCGACGACCGCGGCCTGGCGAAGGGCGAATACTGGCTGGTGA AGGAAAAGATCGCGGCCGGCTATGCCCAGGCGAACTTCGAAACCGGCAAGCTGCGCGGCAACGTCGGCGTCCGCTTCGTC AGCACCAAGACGGAATCGAACTTCTACGCGCAGAGCGGTTCGACCGTTCAGCTCGTGCAGTACAACAAGACCGACAACCG GTTCCTGCCCTCGATCAACGTGATCTACGACGCGGGCGATACGGTTGTGCTGCGTGCAGCGGCGGCCAAGGTCATGTCGC GTCCGCGCTACTCCGACCTTGCCGGCTACCTTTCGTTGACCGACTCCACCTTGAGCGGCAGCGGCGGCAACCCCGACCTG AAGCCCTACCTTGCGACCAACTTCGGGTTCTCGGCCGAATGGTACTTCGCACCGGGCAGCTTCCTTTCGGGCGAAGTGTT CTACCGCGACATCTCGAACTACGTGGGCAACGAGACGCTCGAGACCGAACTGACCAACCCGATCACCGGCAACACCCTCA CCTATGCGGTGTCGCGCCCGGTAAACGGCGGCAAGGCATCGGTCACCGGCTTCTCGATCTCGGGCAACACCAACCTCGCC TGGGGCTTCGGCATCCAGGCCTCCTACACCTTCGCCGATGCCGAGACGAGCAAGGCGGAAGGCCTGCCCTTCCTGTCGCG CAACACGATCCAGATCTCGCCCTACTACGAGAACGGACCGTTCCAGGCGCGCGTCAGCTACAACCGTCGTTCGAAGTACT TCTACCGCTTCGGCCGCCAGCAGTCGCAGGACTACACCGACGCCTACCGCCAGCTTGACGCGCAGGTCTCCTACGCGATC AACGAGAACCTGAGCGTGACGGCGACGGCTTCGAACCTGCTGGACGAGACGTACTACCAGTACAGCTCGACCAAGAACGC GCCGACTTCGATCTACAAGAATGGCCGCGTCTATTCGGCCAGCATGACTGCGAAGTTCTAA
Upstream 100 bases:
>100_bases AATGCAAACAGGTTACCAGCGTATGTCCAGATAGCATTTTTCGTTGGAATATCGGCGCCACAGATATAACATACGCATAA CCAAATAGGGTGTTGGTAAC
Downstream 100 bases:
>100_bases GAACCACCACTGCGCTCCCAGGTGGCTTGCCCGCTCCCCGAAAGGGGGGCGGGCATTTTTCGTTGGTGACCGCGGTACGT GCGCGCGTGAACGCCTCCGG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Nb-Dependent Receptor; NB-Dependent Receptor Plug; NB-Dependent Outer Membrane Receptor; Nb-Dependent Outer Membrane Receptor Protein; NB-Dependent Receptor Subfamily; Outer Membrane Protein; NB-Dependent Receptor Subfamily Protein; NB-Dependent Outer Membrane Receptor Protein; Outer Membrane Insertion C-Terminal Signal; Nucleoside Diphosphate Kinase; NB-Dependent Receptor-Like Protein; NB-Dependent Maltose Outer Membrane Transporter MalA; NB Dependent Receptor For Iron Chelates; NB-Dependent Receptor Protein; 50S Ribosomal Protein L; NB-Dependent Outer Membrane Ferripyoverdine Receptor; NB-Dependent Receptor Plug Domain; NB Dependent Receptor-Related Protein; 3-Dehydroquinate Synthase; DEAD/DEAH Box Helicase-Like; Peptidase; NB Dependent Receptor Protein; Argininosuccinate Synthase; NB-Dependent Receptor Domain Protein
Number of amino acids: Translated: 926; Mature: 926
Protein sequence:
>926_residues MIGPNTSIRDQGGGRPYTGEIFGAHCAKLLGEIRMTLRHLLLITTTAMVAAPVAAQAQSVSSNEADGIVVTGIRASLRDA IEIKRKASSIVDVISAEDVGKFPDANVADSLARLPGVTVDRQFGEGEQLSIAGVEPALNRLTIDGHSVASADWGGNPSDR SSRSFNYSLLSPSIISQAVVYKTPEARLQEGAIGASVDVVTRKPLDLDSNTFRFNGGYEYNDRADRGSIRGNALYSWKNA DETIGILAAANYDKEQLSRAGVAVYWYRTGQALLDNAPSTATVNGKAITDLTEDERSEFASSRFASFLAREFFKQERERI GFNGAIQVRPSDNLKLTGTALIIRGNYDNVSNSMYTYGYEGSRLISAQFSGGLVTQATFSGIADGQTGSTGQLDTLYRRT RVKNDTYSLAYEWEPDGWHVTGNVGYTRASGGKDPEYLLDFRTQQGFTSGANGRNTTVDWDSPATDPTKWLSNYTANGGE NITASDGRTFFGRQIGGIPTKSGFTLDKEWFTEANAVHDLNAGPFTQLLFGARFTSHENSNTTYSNAIFTDQDFTLADLD YNVLPSGLYDGLGTSGNGAPYVGMDKDGIIAALAKYGNFTDDRGLAKGEYWLVKEKIAAGYAQANFETGKLRGNVGVRFV STKTESNFYAQSGSTVQLVQYNKTDNRFLPSINVIYDAGDTVVLRAAAAKVMSRPRYSDLAGYLSLTDSTLSGSGGNPDL KPYLATNFGFSAEWYFAPGSFLSGEVFYRDISNYVGNETLETELTNPITGNTLTYAVSRPVNGGKASVTGFSISGNTNLA WGFGIQASYTFADAETSKAEGLPFLSRNTIQISPYYENGPFQARVSYNRRSKYFYRFGRQQSQDYTDAYRQLDAQVSYAI NENLSVTATASNLLDETYYQYSSTKNAPTSIYKNGRVYSASMTAKF
Sequences:
>Translated_926_residues MIGPNTSIRDQGGGRPYTGEIFGAHCAKLLGEIRMTLRHLLLITTTAMVAAPVAAQAQSVSSNEADGIVVTGIRASLRDA IEIKRKASSIVDVISAEDVGKFPDANVADSLARLPGVTVDRQFGEGEQLSIAGVEPALNRLTIDGHSVASADWGGNPSDR SSRSFNYSLLSPSIISQAVVYKTPEARLQEGAIGASVDVVTRKPLDLDSNTFRFNGGYEYNDRADRGSIRGNALYSWKNA DETIGILAAANYDKEQLSRAGVAVYWYRTGQALLDNAPSTATVNGKAITDLTEDERSEFASSRFASFLAREFFKQERERI GFNGAIQVRPSDNLKLTGTALIIRGNYDNVSNSMYTYGYEGSRLISAQFSGGLVTQATFSGIADGQTGSTGQLDTLYRRT RVKNDTYSLAYEWEPDGWHVTGNVGYTRASGGKDPEYLLDFRTQQGFTSGANGRNTTVDWDSPATDPTKWLSNYTANGGE NITASDGRTFFGRQIGGIPTKSGFTLDKEWFTEANAVHDLNAGPFTQLLFGARFTSHENSNTTYSNAIFTDQDFTLADLD YNVLPSGLYDGLGTSGNGAPYVGMDKDGIIAALAKYGNFTDDRGLAKGEYWLVKEKIAAGYAQANFETGKLRGNVGVRFV STKTESNFYAQSGSTVQLVQYNKTDNRFLPSINVIYDAGDTVVLRAAAAKVMSRPRYSDLAGYLSLTDSTLSGSGGNPDL KPYLATNFGFSAEWYFAPGSFLSGEVFYRDISNYVGNETLETELTNPITGNTLTYAVSRPVNGGKASVTGFSISGNTNLA WGFGIQASYTFADAETSKAEGLPFLSRNTIQISPYYENGPFQARVSYNRRSKYFYRFGRQQSQDYTDAYRQLDAQVSYAI NENLSVTATASNLLDETYYQYSSTKNAPTSIYKNGRVYSASMTAKF >Mature_926_residues MIGPNTSIRDQGGGRPYTGEIFGAHCAKLLGEIRMTLRHLLLITTTAMVAAPVAAQAQSVSSNEADGIVVTGIRASLRDA IEIKRKASSIVDVISAEDVGKFPDANVADSLARLPGVTVDRQFGEGEQLSIAGVEPALNRLTIDGHSVASADWGGNPSDR SSRSFNYSLLSPSIISQAVVYKTPEARLQEGAIGASVDVVTRKPLDLDSNTFRFNGGYEYNDRADRGSIRGNALYSWKNA DETIGILAAANYDKEQLSRAGVAVYWYRTGQALLDNAPSTATVNGKAITDLTEDERSEFASSRFASFLAREFFKQERERI GFNGAIQVRPSDNLKLTGTALIIRGNYDNVSNSMYTYGYEGSRLISAQFSGGLVTQATFSGIADGQTGSTGQLDTLYRRT RVKNDTYSLAYEWEPDGWHVTGNVGYTRASGGKDPEYLLDFRTQQGFTSGANGRNTTVDWDSPATDPTKWLSNYTANGGE NITASDGRTFFGRQIGGIPTKSGFTLDKEWFTEANAVHDLNAGPFTQLLFGARFTSHENSNTTYSNAIFTDQDFTLADLD YNVLPSGLYDGLGTSGNGAPYVGMDKDGIIAALAKYGNFTDDRGLAKGEYWLVKEKIAAGYAQANFETGKLRGNVGVRFV STKTESNFYAQSGSTVQLVQYNKTDNRFLPSINVIYDAGDTVVLRAAAAKVMSRPRYSDLAGYLSLTDSTLSGSGGNPDL KPYLATNFGFSAEWYFAPGSFLSGEVFYRDISNYVGNETLETELTNPITGNTLTYAVSRPVNGGKASVTGFSISGNTNLA WGFGIQASYTFADAETSKAEGLPFLSRNTIQISPYYENGPFQARVSYNRRSKYFYRFGRQQSQDYTDAYRQLDAQVSYAI NENLSVTATASNLLDETYYQYSSTKNAPTSIYKNGRVYSASMTAKF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 100693; Mature: 100693
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIGPNTSIRDQGGGRPYTGEIFGAHCAKLLGEIRMTLRHLLLITTTAMVAAPVAAQAQSV CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SSNEADGIVVTGIRASLRDAIEIKRKASSIVDVISAEDVGKFPDANVADSLARLPGVTVD CCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEE RQFGEGEQLSIAGVEPALNRLTIDGHSVASADWGGNPSDRSSRSFNYSLLSPSIISQAVV CCCCCCCEEEEECCCCCHHEEEECCCCEECCCCCCCCCCCCCCCEEEEECCHHHHHHHHE YKTPEARLQEGAIGASVDVVTRKPLDLDSNTFRFNGGYEYNDRADRGSIRGNALYSWKNA EECCHHHHHCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCC DETIGILAAANYDKEQLSRAGVAVYWYRTGQALLDNAPSTATVNGKAITDLTEDERSEFA CCEEEEEEECCCCHHHHHHCCEEEEEEECCHHHHCCCCCEEEECCCEEECCCHHHHHHHH SSRFASFLAREFFKQERERIGFNGAIQVRPSDNLKLTGTALIIRGNYDNVSNSMYTYGYE HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEEEEEECCCCCCCCCEEEECCC GSRLISAQFSGGLVTQATFSGIADGQTGSTGQLDTLYRRTRVKNDTYSLAYEWEPDGWHV CCEEEEEECCCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCEEE TGNVGYTRASGGKDPEYLLDFRTQQGFTSGANGRNTTVDWDSPATDPTKWLSNYTANGGE ECCCCEEECCCCCCHHHHEEEHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHCCCCCCCC NITASDGRTFFGRQIGGIPTKSGFTLDKEWFTEANAVHDLNAGPFTQLLFGARFTSHENS EEECCCCCEEECHHCCCCCCCCCCEECHHHHCCCCCEEECCCCHHHHHHHHHHCCCCCCC NTTYSNAIFTDQDFTLADLDYNVLPSGLYDGLGTSGNGAPYVGMDKDGIIAALAKYGNFT CCEECCEEEECCCCEEEECCCCCCCCHHHHCCCCCCCCCCEECCCCCCHHHHHHHHCCCC DDRGLAKGEYWLVKEKIAAGYAQANFETGKLRGNVGVRFVSTKTESNFYAQSGSTVQLVQ CCCCCCCCCEEEEEHHHHCCHHHCCCCCCEEECCCEEEEEEECCCCCEEECCCCEEEEEE YNKTDNRFLPSINVIYDAGDTVVLRAAAAKVMSRPRYSDLAGYLSLTDSTLSGSGGNPDL ECCCCCCCCCCEEEEEECCCEEEEHHHHHHHHCCCCHHHHHHEEEEECCCCCCCCCCCCC KPYLATNFGFSAEWYFAPGSFLSGEVFYRDISNYVGNETLETELTNPITGNTLTYAVSRP CCEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHHCCCCCCCCEEEEEEECC VNGGKASVTGFSISGNTNLAWGFGIQASYTFADAETSKAEGLPFLSRNTIQISPYYENGP CCCCCEEEEEEEECCCCEEEEEECCEEEEEECCCCCCHHCCCCEECCCEEEEEEEECCCC FQARVSYNRRSKYFYRFGRQQSQDYTDAYRQLDAQVSYAINENLSVTATASNLLDETYYQ EEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHCEEEEEECCCCEEEEEHHHHHHHHHHH YSSTKNAPTSIYKNGRVYSASMTAKF HCCCCCCCHHHCCCCEEEEEEEEECC >Mature Secondary Structure MIGPNTSIRDQGGGRPYTGEIFGAHCAKLLGEIRMTLRHLLLITTTAMVAAPVAAQAQSV CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SSNEADGIVVTGIRASLRDAIEIKRKASSIVDVISAEDVGKFPDANVADSLARLPGVTVD CCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEE RQFGEGEQLSIAGVEPALNRLTIDGHSVASADWGGNPSDRSSRSFNYSLLSPSIISQAVV CCCCCCCEEEEECCCCCHHEEEECCCCEECCCCCCCCCCCCCCCEEEEECCHHHHHHHHE YKTPEARLQEGAIGASVDVVTRKPLDLDSNTFRFNGGYEYNDRADRGSIRGNALYSWKNA EECCHHHHHCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCC DETIGILAAANYDKEQLSRAGVAVYWYRTGQALLDNAPSTATVNGKAITDLTEDERSEFA CCEEEEEEECCCCHHHHHHCCEEEEEEECCHHHHCCCCCEEEECCCEEECCCHHHHHHHH SSRFASFLAREFFKQERERIGFNGAIQVRPSDNLKLTGTALIIRGNYDNVSNSMYTYGYE HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEEEEEECCCCCCCCCEEEECCC GSRLISAQFSGGLVTQATFSGIADGQTGSTGQLDTLYRRTRVKNDTYSLAYEWEPDGWHV CCEEEEEECCCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCEEE TGNVGYTRASGGKDPEYLLDFRTQQGFTSGANGRNTTVDWDSPATDPTKWLSNYTANGGE ECCCCEEECCCCCCHHHHEEEHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHCCCCCCCC NITASDGRTFFGRQIGGIPTKSGFTLDKEWFTEANAVHDLNAGPFTQLLFGARFTSHENS EEECCCCCEEECHHCCCCCCCCCCEECHHHHCCCCCEEECCCCHHHHHHHHHHCCCCCCC NTTYSNAIFTDQDFTLADLDYNVLPSGLYDGLGTSGNGAPYVGMDKDGIIAALAKYGNFT CCEECCEEEECCCCEEEECCCCCCCCHHHHCCCCCCCCCCEECCCCCCHHHHHHHHCCCC DDRGLAKGEYWLVKEKIAAGYAQANFETGKLRGNVGVRFVSTKTESNFYAQSGSTVQLVQ CCCCCCCCCEEEEEHHHHCCHHHCCCCCCEEECCCEEEEEEECCCCCEEECCCCEEEEEE YNKTDNRFLPSINVIYDAGDTVVLRAAAAKVMSRPRYSDLAGYLSLTDSTLSGSGGNPDL ECCCCCCCCCCEEEEEECCCEEEEHHHHHHHHCCCCHHHHHHEEEEECCCCCCCCCCCCC KPYLATNFGFSAEWYFAPGSFLSGEVFYRDISNYVGNETLETELTNPITGNTLTYAVSRP CCEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHHCCCCCCCCEEEEEEECC VNGGKASVTGFSISGNTNLAWGFGIQASYTFADAETSKAEGLPFLSRNTIQISPYYENGP CCCCCEEEEEEEECCCCEEEEEECCEEEEEECCCCCCHHCCCCEECCCEEEEEEEECCCC FQARVSYNRRSKYFYRFGRQQSQDYTDAYRQLDAQVSYAINENLSVTATASNLLDETYYQ EEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHCEEEEEECCCCEEEEEHHHHHHHHHHH YSSTKNAPTSIYKNGRVYSASMTAKF HCCCCCCCHHHCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA