| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is nahA [H]
Identifier: 87200430
GI number: 87200430
Start: 2591327
End: 2593792
Strand: Direct
Name: nahA [H]
Synonym: Saro_2417
Alternate gene names: 87200430
Gene position: 2591327-2593792 (Clockwise)
Preceding gene: 87200423
Following gene: 87200431
Centisome position: 72.76
GC content: 67.27
Gene sequence:
>2466_bases GTGACTTTGGACTGGATTTTGCGGCGGCATCATATAACATACTCCATACCAATTATGGAATTGGACATGGCGCAGGCGGT GCGGTCCGGGGGTTTCGGCCCTTTCAGCGATTCGGCGGGCCGGTCCGGTGTCCTGCAGGGAGATCCCATGAAGCCGTCGA TGCTCAACCCGGCCCATCTTGCAGCAGTCCCTTTCGCGATCGCCGCGCTCGCGTCGGGCGCGGGCATTACTTCGGCACAG GCGTCGGCACGATCAGGGACCGACCTCCCGCTCATTCCGATGCCCGCCAGCGTCGTCGCCGGACAAGGCGCGCTGCGAAT CGGGGCGGATACGCCGGTCGTCGCGGCATCCGGTGACGCAGGGGCCGAGCGCGCGGCGCGGTTCCTCGCCGAAAGGGCGA AGGCGCAGCGTGGGCTCTCGCTGGCGACCGCAAGCATGGCTTCGGGCCCGGCCATACGGTTCGTCCGGGACAACGCGATC GCGGGCGAAGAGGCCTATCGGCTCACCGTCACGGCCAAGGGCGCGACCGTCGCGGCATCCGGCGACCGCGGCATGATCTG GGGGGCGGCAACGCTGGTGCAGCTCCTGTCGCCCGACGGGCGCACCGGCCAGCCGGTGCAGGTTCCGGCAATGACCATAG AGGACGCGCCGCGCTATTCCTGGCGCGGGCTGATGATGGACGTGGCGCGGCACTTCCAGCCGATCGAGACGCTCTATCCG GTGGTCGACGCAATGGCCGAGCAGAAGCTCAACGTGCTCCACCTCCACCTCAGCGACGACCAGGGCTGGCGGGTGGAGAT CAAGCGCTATCCGAAACTGACCGAGATCGGCGCCTGGCGCACGCCGCCATCCGCCGGGGAGCCGACGGCCGCGAAAGTCG GCGGGTTCTACACGCAGGAACAGCTCAAGGCGCTGGTCGCCTATGCCGGCGCGCGCGGGATCACCGTTGTCCCCGAAATC GACATGCCCGGCCACGCGCAAGCCGCGGTTGCCGCCTATCCGGAAGAAGTCGGCGTGCTGGGCGACAGGCCGCAGGTGGG GCATGACTGGGGCGTCAATCCGTGGCTGTTCTCACCATCGGAAGGCAGCATGACCTTTATCCGCAACGTGCTCGACGAAC TGGTCGAGGTGTTCCCCTCGCCCTTCATCCACGTCGGCGGCGACGAGGCGGTCAAGGACCAGTGGCAACGGTCGCCCGAA GTGCAGGCGCAGATGGCCGCGCTCGGGCTCAAGACCGAGAACCAGCTTCAGGGCTGGATGATCGCAGAACTGGGCAAGCA TCTGGCCACCAAGGGCCGGCGCCTGATCGGCTGGGACGAAATCCTCGAGGGTGACGTGCCGACGAGCGCCTCGGTCATGT CGTGGCGCGGCGAAAAAGGTGCGGTCGAAGCCGCGAACAAGGGGCACGACGTGGTGCTGTCCCCCGCCCCCGACCTCTAT CTCGACAACCTTCAATCAGACCGCTCCGACGAGCCCCCGGGTCGCATCGGCATCCGCACGCTGGAGCAGGTCTACCGCTA TGAACCGACGCCTTCGGGCATCGCGCCGGAGCGGCTGAAGCATGTTCTGGGCGCGCAAGCCAATGCCTGGTCGGAGTACC TGGCGACGGCGAAGCAGAAGGAACATGCAATATTCCCGCGGCTTTCCGCCGTTGCCGAAGTGACATGGACAGCGCCCGCA CGTCGTGACTGGAAGAGCTTCGTCGCCCGGCTGGAGCCCCAGATGCTGCGCTACTCGCGCGAGGGCATCGCGGCGGCCGA CAGCGCCTTTGCGGTAAACTTCCGCATGAAGGAAAGCCGGGGCGAAGCGCTGCGTGGCGGCAGGCTGACGCTGGCGATGG ATACCCAGGCGGGCGCAGGCACGATCCGCTTCGGCGCGGGCCGCAAGATCTATCAGGGACCGGTGACGATCAAGGTCGGA AGCAAGGTCGAAGCGGCGGCGTGGCTGGCCGATGGACGCACGGCGGCAGCCCCGCGCACCTTCGACGCCACCCGTACGGC ATTGCTCACGGCAAGCGCTTCGGATCTTGCCGCCTGCCCCAAGGGCGCGCTGGGCCTGAGGGTACCGCTCGTCTCCGGAC AGGTGGAGGACGCGCCGGCCTTCAACGTCAACATCTTCGACACCTGCACCCAGTGGATCGATGCGCCGCTGGGTTCGGCC AGGGGCGCGACGTTCGAAGTGGCCCGACTGCCGCGCCACTATGGCCTGGCGCACGAAGCATCGGCCCTGCGCGAGCATTA CGCGGTGACCGAACATGGCGAACTGGTCGTGCGGCGCGGCGGTTGCGAGGGTGCGGTGCTTGCCACCTTCCCCCTGCCCG ATCCGAAAAGCGCGCCCAACCGGCTGCGCTTTGCCGCCCCGGTCGATGCCAAGCAGGGCGACGGCGCGCTGTGCATGCAG TTCACCTCTCCTCTGTACGATCCGTTCTATGCCATCGAAAAGGTGGTGCTGGAGGACTCGCAGTGA
Upstream 100 bases:
>100_bases GGGAGCGCCCGGGCAAGCGCGTCACCCTGTCCCAAGAAGCTCGGACTATCCTCGCTTAACCAGTCACTTAGCCCCGCGCG GAACGAGCGTTCGGGATGCT
Downstream 100 bases:
>100_bases TCCGTCCGCTGCTGGGGGCTTTGCTGGCCACGGTTCCGGTCCTCGCCATGGCCGCGCCGCGCAGTGAAGTGCTGCTCGAC AAGGGCTGGCAGGTGCGGCT
Product: beta-N-acetylhexosaminidase
Products: NA
Alternate protein names: Beta-GlcNAcase; Beta-N-acetylhexosaminidase; Beta-NAHase; N-acetyl-beta-glucosaminidase [H]
Number of amino acids: Translated: 821; Mature: 820
Protein sequence:
>821_residues MTLDWILRRHHITYSIPIMELDMAQAVRSGGFGPFSDSAGRSGVLQGDPMKPSMLNPAHLAAVPFAIAALASGAGITSAQ ASARSGTDLPLIPMPASVVAGQGALRIGADTPVVAASGDAGAERAARFLAERAKAQRGLSLATASMASGPAIRFVRDNAI AGEEAYRLTVTAKGATVAASGDRGMIWGAATLVQLLSPDGRTGQPVQVPAMTIEDAPRYSWRGLMMDVARHFQPIETLYP VVDAMAEQKLNVLHLHLSDDQGWRVEIKRYPKLTEIGAWRTPPSAGEPTAAKVGGFYTQEQLKALVAYAGARGITVVPEI DMPGHAQAAVAAYPEEVGVLGDRPQVGHDWGVNPWLFSPSEGSMTFIRNVLDELVEVFPSPFIHVGGDEAVKDQWQRSPE VQAQMAALGLKTENQLQGWMIAELGKHLATKGRRLIGWDEILEGDVPTSASVMSWRGEKGAVEAANKGHDVVLSPAPDLY LDNLQSDRSDEPPGRIGIRTLEQVYRYEPTPSGIAPERLKHVLGAQANAWSEYLATAKQKEHAIFPRLSAVAEVTWTAPA RRDWKSFVARLEPQMLRYSREGIAAADSAFAVNFRMKESRGEALRGGRLTLAMDTQAGAGTIRFGAGRKIYQGPVTIKVG SKVEAAAWLADGRTAAAPRTFDATRTALLTASASDLAACPKGALGLRVPLVSGQVEDAPAFNVNIFDTCTQWIDAPLGSA RGATFEVARLPRHYGLAHEASALREHYAVTEHGELVVRRGGCEGAVLATFPLPDPKSAPNRLRFAAPVDAKQGDGALCMQ FTSPLYDPFYAIEKVVLEDSQ
Sequences:
>Translated_821_residues MTLDWILRRHHITYSIPIMELDMAQAVRSGGFGPFSDSAGRSGVLQGDPMKPSMLNPAHLAAVPFAIAALASGAGITSAQ ASARSGTDLPLIPMPASVVAGQGALRIGADTPVVAASGDAGAERAARFLAERAKAQRGLSLATASMASGPAIRFVRDNAI AGEEAYRLTVTAKGATVAASGDRGMIWGAATLVQLLSPDGRTGQPVQVPAMTIEDAPRYSWRGLMMDVARHFQPIETLYP VVDAMAEQKLNVLHLHLSDDQGWRVEIKRYPKLTEIGAWRTPPSAGEPTAAKVGGFYTQEQLKALVAYAGARGITVVPEI DMPGHAQAAVAAYPEEVGVLGDRPQVGHDWGVNPWLFSPSEGSMTFIRNVLDELVEVFPSPFIHVGGDEAVKDQWQRSPE VQAQMAALGLKTENQLQGWMIAELGKHLATKGRRLIGWDEILEGDVPTSASVMSWRGEKGAVEAANKGHDVVLSPAPDLY LDNLQSDRSDEPPGRIGIRTLEQVYRYEPTPSGIAPERLKHVLGAQANAWSEYLATAKQKEHAIFPRLSAVAEVTWTAPA RRDWKSFVARLEPQMLRYSREGIAAADSAFAVNFRMKESRGEALRGGRLTLAMDTQAGAGTIRFGAGRKIYQGPVTIKVG SKVEAAAWLADGRTAAAPRTFDATRTALLTASASDLAACPKGALGLRVPLVSGQVEDAPAFNVNIFDTCTQWIDAPLGSA RGATFEVARLPRHYGLAHEASALREHYAVTEHGELVVRRGGCEGAVLATFPLPDPKSAPNRLRFAAPVDAKQGDGALCMQ FTSPLYDPFYAIEKVVLEDSQ >Mature_820_residues TLDWILRRHHITYSIPIMELDMAQAVRSGGFGPFSDSAGRSGVLQGDPMKPSMLNPAHLAAVPFAIAALASGAGITSAQA SARSGTDLPLIPMPASVVAGQGALRIGADTPVVAASGDAGAERAARFLAERAKAQRGLSLATASMASGPAIRFVRDNAIA GEEAYRLTVTAKGATVAASGDRGMIWGAATLVQLLSPDGRTGQPVQVPAMTIEDAPRYSWRGLMMDVARHFQPIETLYPV VDAMAEQKLNVLHLHLSDDQGWRVEIKRYPKLTEIGAWRTPPSAGEPTAAKVGGFYTQEQLKALVAYAGARGITVVPEID MPGHAQAAVAAYPEEVGVLGDRPQVGHDWGVNPWLFSPSEGSMTFIRNVLDELVEVFPSPFIHVGGDEAVKDQWQRSPEV QAQMAALGLKTENQLQGWMIAELGKHLATKGRRLIGWDEILEGDVPTSASVMSWRGEKGAVEAANKGHDVVLSPAPDLYL DNLQSDRSDEPPGRIGIRTLEQVYRYEPTPSGIAPERLKHVLGAQANAWSEYLATAKQKEHAIFPRLSAVAEVTWTAPAR RDWKSFVARLEPQMLRYSREGIAAADSAFAVNFRMKESRGEALRGGRLTLAMDTQAGAGTIRFGAGRKIYQGPVTIKVGS KVEAAAWLADGRTAAAPRTFDATRTALLTASASDLAACPKGALGLRVPLVSGQVEDAPAFNVNIFDTCTQWIDAPLGSAR GATFEVARLPRHYGLAHEASALREHYAVTEHGELVVRRGGCEGAVLATFPLPDPKSAPNRLRFAAPVDAKQGDGALCMQF TSPLYDPFYAIEKVVLEDSQ
Specific function: Unknown
COG id: COG3525
COG function: function code G; N-acetyl-beta-hexosaminidase
Gene ontology:
Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 20 family [H]
Homologues:
Organism=Homo sapiens, GI4504373, Length=520, Percent_Identity=26.3461538461538, Blast_Score=167, Evalue=5e-41, Organism=Homo sapiens, GI189181666, Length=439, Percent_Identity=28.0182232346241, Blast_Score=140, Evalue=4e-33, Organism=Caenorhabditis elegans, GI17569815, Length=503, Percent_Identity=26.2425447316103, Blast_Score=142, Evalue=6e-34, Organism=Drosophila melanogaster, GI24657468, Length=463, Percent_Identity=25.9179265658747, Blast_Score=125, Evalue=2e-28, Organism=Drosophila melanogaster, GI17647501, Length=463, Percent_Identity=25.9179265658747, Blast_Score=125, Evalue=2e-28, Organism=Drosophila melanogaster, GI281365639, Length=463, Percent_Identity=25.9179265658747, Blast_Score=124, Evalue=2e-28, Organism=Drosophila melanogaster, GI24657474, Length=463, Percent_Identity=25.9179265658747, Blast_Score=124, Evalue=2e-28, Organism=Drosophila melanogaster, GI24653074, Length=474, Percent_Identity=25.9493670886076, Blast_Score=124, Evalue=3e-28, Organism=Drosophila melanogaster, GI45551090, Length=474, Percent_Identity=25.9493670886076, Blast_Score=124, Evalue=3e-28, Organism=Drosophila melanogaster, GI17933586, Length=477, Percent_Identity=25.7861635220126, Blast_Score=111, Evalue=3e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015882 - InterPro: IPR001540 - InterPro: IPR015883 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR011658 [H]
Pfam domain/function: PF00728 Glyco_hydro_20; PF02838 Glyco_hydro_20b [H]
EC number: =3.2.1.52 [H]
Molecular weight: Translated: 87909; Mature: 87778
Theoretical pI: Translated: 6.77; Mature: 6.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLDWILRRHHITYSIPIMELDMAQAVRSGGFGPFSDSAGRSGVLQGDPMKPSMLNPAHL CCHHHHHHHCCEEEEECEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH AAVPFAIAALASGAGITSAQASARSGTDLPLIPMPASVVAGQGALRIGADTPVVAASGDA HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCHHHHCCCCCEEECCCCCEEEECCCC GAERAARFLAERAKAQRGLSLATASMASGPAIRFVRDNAIAGEEAYRLTVTAKGATVAAS CHHHHHHHHHHHHHHHCCCEEEHHHHCCCCEEEEEECCCCCCCCEEEEEEEECCEEEEEC GDRGMIWGAATLVQLLSPDGRTGQPVQVPAMTIEDAPRYSWRGLMMDVARHFQPIETLYP CCCCEEHHHHHHHHHHCCCCCCCCCEEECEEEECCCCCCHHHHHHHHHHHHCCHHHHHHH VVDAMAEQKLNVLHLHLSDDQGWRVEIKRYPKLTEIGAWRTPPSAGEPTAAKVGGFYTQE HHHHHHHCCCEEEEEEECCCCCCEEEEECCCCHHHCCCCCCCCCCCCCCHHHHCCCCCHH QLKALVAYAGARGITVVPEIDMPGHAQAAVAAYPEEVGVLGDRPQVGHDWGVNPWLFSPS HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCHHHHCCCCCCCCCCCCCCCCCEEECCC EGSMTFIRNVLDELVEVFPSPFIHVGGDEAVKDQWQRSPEVQAQMAALGLKTENQLQGWM CCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCHH IAELGKHLATKGRRLIGWDEILEGDVPTSASVMSWRGEKGAVEAANKGHDVVLSPAPDLY HHHHHHHHHHCCCEEECHHHHHCCCCCCCCHHHEECCCCCCEECCCCCCEEEECCCCCHH LDNLQSDRSDEPPGRIGIRTLEQVYRYEPTPSGIAPERLKHVLGAQANAWSEYLATAKQK HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH EHAIFPRLSAVAEVTWTAPARRDWKSFVARLEPQMLRYSREGIAAADSAFAVNFRMKESR HHHHHHHHHHHHEEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEEEEEEEECCC GEALRGGRLTLAMDTQAGAGTIRFGAGRKIYQGPVTIKVGSKVEAAAWLADGRTAAAPRT CCHHCCCEEEEEEECCCCCCEEEECCCCEEEECCEEEEECCCCEEHHEEECCCCCCCCCC FDATRTALLTASASDLAACPKGALGLRVPLVSGQVEDAPAFNVNIFDTCTQWIDAPLGSA CCCHHEEEEEECCHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEHHHHHHHHHCCCCCCC RGATFEVARLPRHYGLAHEASALREHYAVTEHGELVVRRGGCEGAVLATFPLPDPKSAPN CCCEEEHHHCHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCC RLRFAAPVDAKQGDGALCMQFTSPLYDPFYAIEKVVLEDSQ CEEEECCCCCCCCCCCEEEEHHCCCCCHHHHHHHHHHCCCC >Mature Secondary Structure TLDWILRRHHITYSIPIMELDMAQAVRSGGFGPFSDSAGRSGVLQGDPMKPSMLNPAHL CHHHHHHHCCEEEEECEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH AAVPFAIAALASGAGITSAQASARSGTDLPLIPMPASVVAGQGALRIGADTPVVAASGDA HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCHHHHCCCCCEEECCCCCEEEECCCC GAERAARFLAERAKAQRGLSLATASMASGPAIRFVRDNAIAGEEAYRLTVTAKGATVAAS CHHHHHHHHHHHHHHHCCCEEEHHHHCCCCEEEEEECCCCCCCCEEEEEEEECCEEEEEC GDRGMIWGAATLVQLLSPDGRTGQPVQVPAMTIEDAPRYSWRGLMMDVARHFQPIETLYP CCCCEEHHHHHHHHHHCCCCCCCCCEEECEEEECCCCCCHHHHHHHHHHHHCCHHHHHHH VVDAMAEQKLNVLHLHLSDDQGWRVEIKRYPKLTEIGAWRTPPSAGEPTAAKVGGFYTQE HHHHHHHCCCEEEEEEECCCCCCEEEEECCCCHHHCCCCCCCCCCCCCCHHHHCCCCCHH QLKALVAYAGARGITVVPEIDMPGHAQAAVAAYPEEVGVLGDRPQVGHDWGVNPWLFSPS HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCHHHHCCCCCCCCCCCCCCCCCEEECCC EGSMTFIRNVLDELVEVFPSPFIHVGGDEAVKDQWQRSPEVQAQMAALGLKTENQLQGWM CCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCHH IAELGKHLATKGRRLIGWDEILEGDVPTSASVMSWRGEKGAVEAANKGHDVVLSPAPDLY HHHHHHHHHHCCCEEECHHHHHCCCCCCCCHHHEECCCCCCEECCCCCCEEEECCCCCHH LDNLQSDRSDEPPGRIGIRTLEQVYRYEPTPSGIAPERLKHVLGAQANAWSEYLATAKQK HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH EHAIFPRLSAVAEVTWTAPARRDWKSFVARLEPQMLRYSREGIAAADSAFAVNFRMKESR HHHHHHHHHHHHEEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEEEEEEEECCC GEALRGGRLTLAMDTQAGAGTIRFGAGRKIYQGPVTIKVGSKVEAAAWLADGRTAAAPRT CCHHCCCEEEEEEECCCCCCEEEECCCCEEEECCEEEEECCCCEEHHEEECCCCCCCCCC FDATRTALLTASASDLAACPKGALGLRVPLVSGQVEDAPAFNVNIFDTCTQWIDAPLGSA CCCHHEEEEEECCHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEHHHHHHHHHCCCCCCC RGATFEVARLPRHYGLAHEASALREHYAVTEHGELVVRRGGCEGAVLATFPLPDPKSAPN CCCEEEHHHCHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCC RLRFAAPVDAKQGDGALCMQFTSPLYDPFYAIEKVVLEDSQ CEEEECCCCCCCCCCCEEEEHHCCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7881557; 12949112 [H]