Click here to switch to the map view.

The map label for this gene is degS [C]

Identifier: 87200411

GI number: 87200411

Start: 2564711

End: 2566306

Strand: Direct

Name: degS [C]

Synonym: Saro_2398

Alternate gene names: 87200411

Gene position: 2564711-2566306 (Clockwise)

Preceding gene: 87200407

Following gene: 87200412

Centisome position: 72.01

GC content: 68.3

Gene sequence:

>1596_bases
TTGCGGTCAAAGCAAAACAGCGCAAGAAGCGCAGGCATGCGTGTCGCCAAACAGATTACTGCGTTCCTCACCCTGCTGTT
CGCCGCGCTTGCGGCACCGGCGGCTCTTGCCGATCCGGCAGACATTTCGGCGGCAAGCCGCTCGGTCGTTCGCGTCGTCA
TCATCGAAAGCGACGGCGACCGCGCCAACCTCATCACCCACGGCACCGGCTTTGCCGTCACGCCCAATCTCATCGTCACC
AACGCGCACGTGGTCGAGGAACTGCGCCGCGACGACACCCTGATCGCTGGCGTCGTCCCCGCCGAGGGACGCAACGGCTT
CCCGGCAAAGCTGGTGGCCTACTCGCCGGGCAACGACCTCGCGCTGCTCAGGATCGAAGGTGGCGGATCGATCACCCCGA
TCACCCTGTTCCCCGGCGCGCCGGGCGATGGATCGGAAGTCTATGCGGTCGGCTATCCCGGCAACGTCGACCTCGCGCAG
GGGCTCTCGATGGCCGATCTTGTCACCCCCCAGGCAGCCGTCAAGACGCGCGGCTATCTGTCCGGCGGGCGCTCCTCGCG
CTCGTTCGACACGTTGCTCCACACCGCTCCGCTCGGCTCGGGCAACTCTGGCGGCCCGCTGCTCGATTCCTGCGGGCGGG
TGATCGGGGTCAACTCGTTCGGCACGGTCAGCGACAACAGCACCGATTCGGCCTTCTACTTCGCCATCTCGATGCGCGAA
CTTTCGGCCTTCCTGCGCCGCGCCAACGTGGATGCGCACACCAGCGGCCTTCCCTGCCGCTCCATCGCCGATCTCGATCG
CGCCGAGGCAGAGCGCGCGGCCGGCGAACAGGCCCGTCTTGCCGCTCAGACCGCAGCCCAGGCCGACGCGAAGCAACGCG
CGATGGACAAGGCGCGCCGCGACGCGGAACTGGCGATTCTCTCCGAACGCGACAACGGCATGGCGCTTGCCGCGCTGCTT
CTCGTCGCGGCGCTCGGCGCGGGCGGATGGGGCATGGTCCAGGCCTCGCGCCATCGCGGGCGGTTCCAGCGCAAGCACGT
GTTTGGCGCAGGCGCACTGCTGCTGGCAGCGGTCGTGACCTGGTTCCTCCGCCCCTCGCTCGCCAGCATCGACCAGCGCG
CCCGCGAGCTTGTGCCCGCGGCTGACGCCAGCAGCCCCGCAGGCTCGGCGTCAGGCATGGCCGAGGCAGGCAGCACCCGC
ATGGTCTGCGTCCTCGATCCGGAACGCAGCCGGGTCACCGTCTCAGACATCACCGACGTCCCCTTCGAATGGAGCGGCGA
CGGCTGCGTCAACGGCAAGACCCAGTACGGCCTGGCACGCGACGGCTGGTCGCGAATCCTCGTGCCCAACGGCGAAGAGA
CGGTTTCGGTCAACTCCTACGATCCAGACAGCCACACCTACACGGTCGAGCGATTCCTCGTCGGGCTCGACGCAATGACC
AAGGCGCGCGCCGAACGCGCCCGCCTCAACGCCCCTGCCTGCGGTGCGGGCGAGGATGCGGCGCGGAAATTCGGGGATAG
TCAGCAGGCTATCAAGGCCCTGCTCCCGCCCGAGCCCAACGAACGGATGCGCTACAACTGCCAGCCGGCGCCCTGA

Upstream 100 bases:

>100_bases
AACGCCTGATACGGCAGTCCTTCGATACGATAGGCCATCTGGTCGTCTCCTTGTTGTGGAGACTTGATGCCATCGGGCTT
CGCGCGGGACGTCCCGCACC

Downstream 100 bases:

>100_bases
TCCGGCGCCGTGGGCGAATTCCCGGTCATACCTATGCACATCTCCGCAAGTCGCATCTTGTCATAACGGCCCGACGTTGC
TAGGCGCGCCCCGTCTGCGG

Product: peptidase S1 and S6, chymotrypsin/Hap

Products: NA

Alternate protein names: Serine Protease; Protease

Number of amino acids: Translated: 531; Mature: 531

Protein sequence:

>531_residues
MRSKQNSARSAGMRVAKQITAFLTLLFAALAAPAALADPADISAASRSVVRVVIIESDGDRANLITHGTGFAVTPNLIVT
NAHVVEELRRDDTLIAGVVPAEGRNGFPAKLVAYSPGNDLALLRIEGGGSITPITLFPGAPGDGSEVYAVGYPGNVDLAQ
GLSMADLVTPQAAVKTRGYLSGGRSSRSFDTLLHTAPLGSGNSGGPLLDSCGRVIGVNSFGTVSDNSTDSAFYFAISMRE
LSAFLRRANVDAHTSGLPCRSIADLDRAEAERAAGEQARLAAQTAAQADAKQRAMDKARRDAELAILSERDNGMALAALL
LVAALGAGGWGMVQASRHRGRFQRKHVFGAGALLLAAVVTWFLRPSLASIDQRARELVPAADASSPAGSASGMAEAGSTR
MVCVLDPERSRVTVSDITDVPFEWSGDGCVNGKTQYGLARDGWSRILVPNGEETVSVNSYDPDSHTYTVERFLVGLDAMT
KARAERARLNAPACGAGEDAARKFGDSQQAIKALLPPEPNERMRYNCQPAP

Sequences:

>Translated_531_residues
MRSKQNSARSAGMRVAKQITAFLTLLFAALAAPAALADPADISAASRSVVRVVIIESDGDRANLITHGTGFAVTPNLIVT
NAHVVEELRRDDTLIAGVVPAEGRNGFPAKLVAYSPGNDLALLRIEGGGSITPITLFPGAPGDGSEVYAVGYPGNVDLAQ
GLSMADLVTPQAAVKTRGYLSGGRSSRSFDTLLHTAPLGSGNSGGPLLDSCGRVIGVNSFGTVSDNSTDSAFYFAISMRE
LSAFLRRANVDAHTSGLPCRSIADLDRAEAERAAGEQARLAAQTAAQADAKQRAMDKARRDAELAILSERDNGMALAALL
LVAALGAGGWGMVQASRHRGRFQRKHVFGAGALLLAAVVTWFLRPSLASIDQRARELVPAADASSPAGSASGMAEAGSTR
MVCVLDPERSRVTVSDITDVPFEWSGDGCVNGKTQYGLARDGWSRILVPNGEETVSVNSYDPDSHTYTVERFLVGLDAMT
KARAERARLNAPACGAGEDAARKFGDSQQAIKALLPPEPNERMRYNCQPAP
>Mature_531_residues
MRSKQNSARSAGMRVAKQITAFLTLLFAALAAPAALADPADISAASRSVVRVVIIESDGDRANLITHGTGFAVTPNLIVT
NAHVVEELRRDDTLIAGVVPAEGRNGFPAKLVAYSPGNDLALLRIEGGGSITPITLFPGAPGDGSEVYAVGYPGNVDLAQ
GLSMADLVTPQAAVKTRGYLSGGRSSRSFDTLLHTAPLGSGNSGGPLLDSCGRVIGVNSFGTVSDNSTDSAFYFAISMRE
LSAFLRRANVDAHTSGLPCRSIADLDRAEAERAAGEQARLAAQTAAQADAKQRAMDKARRDAELAILSERDNGMALAALL
LVAALGAGGWGMVQASRHRGRFQRKHVFGAGALLLAAVVTWFLRPSLASIDQRARELVPAADASSPAGSASGMAEAGSTR
MVCVLDPERSRVTVSDITDVPFEWSGDGCVNGKTQYGLARDGWSRILVPNGEETVSVNSYDPDSHTYTVERFLVGLDAMT
KARAERARLNAPACGAGEDAARKFGDSQQAIKALLPPEPNERMRYNCQPAP

Specific function: Unknown

COG id: COG0265

COG function: function code O; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.4.21.- [C]

Molecular weight: Translated: 55730; Mature: 55730

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: PS00589 PTS_HPR_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSKQNSARSAGMRVAKQITAFLTLLFAALAAPAALADPADISAASRSVVRVVIIESDGD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHCCCCCCEEEEEEEECCCC
RANLITHGTGFAVTPNLIVTNAHVVEELRRDDTLIAGVVPAEGRNGFPAKLVAYSPGNDL
CEEEEECCCCCEECCCEEEECHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCCE
ALLRIEGGGSITPITLFPGAPGDGSEVYAVGYPGNVDLAQGLSMADLVTPQAAVKTRGYL
EEEEECCCCCEEEEEEECCCCCCCCEEEEEECCCCCHHHHCCCHHHHCCCHHHHHHCCHH
SGGRSSRSFDTLLHTAPLGSGNSGGPLLDSCGRVIGVNSFGTVSDNSTDSAFYFAISMRE
CCCCCCCHHHHHHHHCCCCCCCCCCCHHHHCCCEEECCCCCCCCCCCCCCEEEEEEEHHH
LSAFLRRANVDAHTSGLPCRSIADLDRAEAERAAGEQARLAAQTAAQADAKQRAMDKARR
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
DAELAILSERDNGMALAALLLVAALGAGGWGMVQASRHRGRFQRKHVFGAGALLLAAVVT
CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHCHHHHHHHHHHH
WFLRPSLASIDQRARELVPAADASSPAGSASGMAEAGSTRMVCVLDPERSRVTVSDITDV
HHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEHHHCCCC
PFEWSGDGCVNGKTQYGLARDGWSRILVPNGEETVSVNSYDPDSHTYTVERFLVGLDAMT
CCEECCCCEECCCCCCCEECCCCCEEEECCCCCEEEECCCCCCCCCEEHHHHHHHHHHHH
KARAERARLNAPACGAGEDAARKFGDSQQAIKALLPPEPNERMRYNCQPAP
HHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCCCCCEECCCCCC
>Mature Secondary Structure
MRSKQNSARSAGMRVAKQITAFLTLLFAALAAPAALADPADISAASRSVVRVVIIESDGD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHCCCCCCEEEEEEEECCCC
RANLITHGTGFAVTPNLIVTNAHVVEELRRDDTLIAGVVPAEGRNGFPAKLVAYSPGNDL
CEEEEECCCCCEECCCEEEECHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCCE
ALLRIEGGGSITPITLFPGAPGDGSEVYAVGYPGNVDLAQGLSMADLVTPQAAVKTRGYL
EEEEECCCCCEEEEEEECCCCCCCCEEEEEECCCCCHHHHCCCHHHHCCCHHHHHHCCHH
SGGRSSRSFDTLLHTAPLGSGNSGGPLLDSCGRVIGVNSFGTVSDNSTDSAFYFAISMRE
CCCCCCCHHHHHHHHCCCCCCCCCCCHHHHCCCEEECCCCCCCCCCCCCCEEEEEEEHHH
LSAFLRRANVDAHTSGLPCRSIADLDRAEAERAAGEQARLAAQTAAQADAKQRAMDKARR
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
DAELAILSERDNGMALAALLLVAALGAGGWGMVQASRHRGRFQRKHVFGAGALLLAAVVT
CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHCHHHHHHHHHHH
WFLRPSLASIDQRARELVPAADASSPAGSASGMAEAGSTRMVCVLDPERSRVTVSDITDV
HHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEHHHCCCC
PFEWSGDGCVNGKTQYGLARDGWSRILVPNGEETVSVNSYDPDSHTYTVERFLVGLDAMT
CCEECCCCEECCCCCCCEECCCCCEEEECCCCCEEEECCCCCCCCCEEHHHHHHHHHHHH
KARAERARLNAPACGAGEDAARKFGDSQQAIKALLPPEPNERMRYNCQPAP
HHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCCCCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA