| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200347
Identifier: 87200347
GI number: 87200347
Start: 2479376
End: 2481082
Strand: Reverse
Name: 87200347
Synonym: Saro_2333
Alternate gene names: NA
Gene position: 2481082-2479376 (Counterclockwise)
Preceding gene: 87200348
Following gene: 87200346
Centisome position: 69.66
GC content: 67.49
Gene sequence:
>1707_bases ATGAAGGTCGCCGCCCTCGCGCTGCGCATGGCGCTGCTGGCGGGTACCCTTGCCGCAGGTCCGCTCCATGCGCAGACGCT CTCCTATGAAAGCGTCGATGGCGATGCGCCCTCCGGCAAGGCGTCGGGCAAGGAAGATCGCGGCGGCAGTTCCCTGCGCG GCGCGGGCGGCGGTCCGCGCACCACGATCAAGCCCTATATCGAGGCGACGCAGAACGTCCTGTGGGAGCTGTCCCCCGGC GACGAGGTCCTGACCTACAGCACGATCGCCGCTGGCGTGGACGTGGCCCTCGACGGCCGCCGCACCCAGGGCGCGGTCTC GGTGCGCTACGAACGCCGCATCTCGCAGACCGACGGAGTTCGCGACGGTGACACGCTGTCGGGCCTCGCCAGGGTCAAGC ACGACCTTATCCCGCGCACACTCTCGGTCGAAGCCGGCGCACTGGCCGCGCGCACCCGCGTGGAGGGCAGCGGCGCCTCG ACGCTGAACCCGCTCGCGGCCAGCGACGCGGTCAGCCAGGTCTATTCGCTGTACGCGGGGCCCGCCGTCTCGACGCACGT GGGCGATGTCGCGCTCGCTGGCTCGTACATGCTGGGCTATACGAAGGTTCAGCAGAAGGACGCGATCCAGCTCGCTGCCG GTGAGCCGCTGACCGACATTTTCGACGATTCCGTTTCGCAATCCGCGCAGCTTTCGGCTGGCGTTGCGCCCGACACCGTG CTGCCGGTGGGTATCACGGCGAGCGGTTCGTACTACCAGGAAGACGTCTCCAACCTCGACCAGCGCGTGCGCGACATGCG CGCCGGGGTGCAGGTCACCTATCCGGTGAGCCTGGAACTCGCCCTGGTCGGTGCGGTCGGCTACGAGGATGTCGAGGTTT CCTCGCGCGATGCGGTGCGCGACGCGGATGGCGATCCCGTCCTTGGCAGCGACGGCCGCTACCTGACCGACAAGTCCCGT CCGCGCCAGCTGGCCTACGAGACCGATGGCCTGACCTGGGACGCCGGGGTGATGTGGCGCCCAAGCCGGCGCACCGCGCT TTCGGCCTTCGTCGGCCGCCGCTACGACAGCATGACCTATTACGGCAGCTTCTCGTACAATCCCGACCCGCGAAGCTCGC TTACGGTTGCCGTCTACGACAACGTGTCCGGCTTTGGCGGACAGGTGAGCCGGGCGTTGCGCGACCTGCCGACCGATTTC CAGGTCAATCGGGACCCGTTCAACGGCCAGATCAGCGGATGTGCGATCGGCTCTCAAAGCGGCGGCTGCGTCAACAACGC GCTGTCCTCGGTCGCCAGCTCGGTGTTCCGGGCGCGGGGCGTGAACGCAACCTACGCGCATCGCGTGGGCCGGATGCAGG CCGGCATCGGCGCGGGCTACATCCGCCGCAAGTACATCGCGCGCGAGGATTCGGTCCTGGGTTCGGTCAACGGCCAGGTG GACGAAAGCTTCTATGTCGACGCTGGCCTGAACGGCCCGATCGACCGCCGTTCCAGCTTCGCCGTTTCGGCCTATGCCGC ATGGTTCCAGTCGGGCGCTTCGAGCCTTGGCGACGTGACCACCATCGGCGCCAACGCGGCCTACTTCCGCAACCTGACGG ACCGGCTCGTGGCGACGGCGGCCGTCAGTTTGGACAGTGTTAACCGTAAGGTGATTGAAGACGAGGTAGTAGCGTCCGGC CTGGTTGGCCTGCGCTATTCTTTCTGA
Upstream 100 bases:
>100_bases TGGGCCTGCTTTCGGCCTGCGAGGATATCAAGCTCCTGCTCAACGGCACGCGCTTTTCCACCACTGGCCGCCGTTTCGGC ACCTACTACGGATACACGGA
Downstream 100 bases:
>100_bases TGCCCGGAGACGGCTTCGATGTACGATGAATTCTATGGCCTTTCGGCCCGCCCGTTCCAGCTCACGCCGGACCCGCGCTT CTATTTCGAGAGCGGGACGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 568; Mature: 568
Protein sequence:
>568_residues MKVAALALRMALLAGTLAAGPLHAQTLSYESVDGDAPSGKASGKEDRGGSSLRGAGGGPRTTIKPYIEATQNVLWELSPG DEVLTYSTIAAGVDVALDGRRTQGAVSVRYERRISQTDGVRDGDTLSGLARVKHDLIPRTLSVEAGALAARTRVEGSGAS TLNPLAASDAVSQVYSLYAGPAVSTHVGDVALAGSYMLGYTKVQQKDAIQLAAGEPLTDIFDDSVSQSAQLSAGVAPDTV LPVGITASGSYYQEDVSNLDQRVRDMRAGVQVTYPVSLELALVGAVGYEDVEVSSRDAVRDADGDPVLGSDGRYLTDKSR PRQLAYETDGLTWDAGVMWRPSRRTALSAFVGRRYDSMTYYGSFSYNPDPRSSLTVAVYDNVSGFGGQVSRALRDLPTDF QVNRDPFNGQISGCAIGSQSGGCVNNALSSVASSVFRARGVNATYAHRVGRMQAGIGAGYIRRKYIAREDSVLGSVNGQV DESFYVDAGLNGPIDRRSSFAVSAYAAWFQSGASSLGDVTTIGANAAYFRNLTDRLVATAAVSLDSVNRKVIEDEVVASG LVGLRYSF
Sequences:
>Translated_568_residues MKVAALALRMALLAGTLAAGPLHAQTLSYESVDGDAPSGKASGKEDRGGSSLRGAGGGPRTTIKPYIEATQNVLWELSPG DEVLTYSTIAAGVDVALDGRRTQGAVSVRYERRISQTDGVRDGDTLSGLARVKHDLIPRTLSVEAGALAARTRVEGSGAS TLNPLAASDAVSQVYSLYAGPAVSTHVGDVALAGSYMLGYTKVQQKDAIQLAAGEPLTDIFDDSVSQSAQLSAGVAPDTV LPVGITASGSYYQEDVSNLDQRVRDMRAGVQVTYPVSLELALVGAVGYEDVEVSSRDAVRDADGDPVLGSDGRYLTDKSR PRQLAYETDGLTWDAGVMWRPSRRTALSAFVGRRYDSMTYYGSFSYNPDPRSSLTVAVYDNVSGFGGQVSRALRDLPTDF QVNRDPFNGQISGCAIGSQSGGCVNNALSSVASSVFRARGVNATYAHRVGRMQAGIGAGYIRRKYIAREDSVLGSVNGQV DESFYVDAGLNGPIDRRSSFAVSAYAAWFQSGASSLGDVTTIGANAAYFRNLTDRLVATAAVSLDSVNRKVIEDEVVASG LVGLRYSF >Mature_568_residues MKVAALALRMALLAGTLAAGPLHAQTLSYESVDGDAPSGKASGKEDRGGSSLRGAGGGPRTTIKPYIEATQNVLWELSPG DEVLTYSTIAAGVDVALDGRRTQGAVSVRYERRISQTDGVRDGDTLSGLARVKHDLIPRTLSVEAGALAARTRVEGSGAS TLNPLAASDAVSQVYSLYAGPAVSTHVGDVALAGSYMLGYTKVQQKDAIQLAAGEPLTDIFDDSVSQSAQLSAGVAPDTV LPVGITASGSYYQEDVSNLDQRVRDMRAGVQVTYPVSLELALVGAVGYEDVEVSSRDAVRDADGDPVLGSDGRYLTDKSR PRQLAYETDGLTWDAGVMWRPSRRTALSAFVGRRYDSMTYYGSFSYNPDPRSSLTVAVYDNVSGFGGQVSRALRDLPTDF QVNRDPFNGQISGCAIGSQSGGCVNNALSSVASSVFRARGVNATYAHRVGRMQAGIGAGYIRRKYIAREDSVLGSVNGQV DESFYVDAGLNGPIDRRSSFAVSAYAAWFQSGASSLGDVTTIGANAAYFRNLTDRLVATAAVSLDSVNRKVIEDEVVASG LVGLRYSF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59839; Mature: 59839
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVAALALRMALLAGTLAAGPLHAQTLSYESVDGDAPSGKASGKEDRGGSSLRGAGGGPR CCHHHHHHHHHHHHHHHCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TTIKPYIEATQNVLWELSPGDEVLTYSTIAAGVDVALDGRRTQGAVSVRYERRISQTDGV CCHHHHHHHCCCEEEEECCCCCEEEEEHHHCCCEEEECCCCCCCEEEEHHHHHHHHCCCC RDGDTLSGLARVKHDLIPRTLSVEAGALAARTRVEGSGASTLNPLAASDAVSQVYSLYAG CCCHHHHHHHHHHHHHCCCEEECCCCHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHCC PAVSTHVGDVALAGSYMLGYTKVQQKDAIQLAAGEPLTDIFDDSVSQSAQLSAGVAPDTV CCCHHCCCCCCCCCCHHCCHHHHCCCCCEEEECCCCHHHHHHHHHCCCHHHCCCCCCCCE LPVGITASGSYYQEDVSNLDQRVRDMRAGVQVTYPVSLELALVGAVGYEDVEVSSRDAVR EEEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEECEEEEEEEEEECCCCCCCCCCCCCCC DADGDPVLGSDGRYLTDKSRPRQLAYETDGLTWDAGVMWRPSRRTALSAFVGRRYDSMTY CCCCCCEECCCCCCCCCCCCCCEEEEECCCEEECCCEEECCCHHHHHHHHHHCCCCCEEE YGSFSYNPDPRSSLTVAVYDNVSGFGGQVSRALRDLPTDFQVNRDPFNGQISGCAIGSQS EEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCEECCCCCCCEEEEEEECCCC GGCVNNALSSVASSVFRARGVNATYAHRVGRMQAGIGAGYIRRKYIAREDSVLGSVNGQV CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCC DESFYVDAGLNGPIDRRSSFAVSAYAAWFQSGASSLGDVTTIGANAAYFRNLTDRLVATA CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHH AVSLDSVNRKVIEDEVVASGLVGLRYSF HHHHHHHHHHHHHHHHHHHCCCCEEECC >Mature Secondary Structure MKVAALALRMALLAGTLAAGPLHAQTLSYESVDGDAPSGKASGKEDRGGSSLRGAGGGPR CCHHHHHHHHHHHHHHHCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TTIKPYIEATQNVLWELSPGDEVLTYSTIAAGVDVALDGRRTQGAVSVRYERRISQTDGV CCHHHHHHHCCCEEEEECCCCCEEEEEHHHCCCEEEECCCCCCCEEEEHHHHHHHHCCCC RDGDTLSGLARVKHDLIPRTLSVEAGALAARTRVEGSGASTLNPLAASDAVSQVYSLYAG CCCHHHHHHHHHHHHHCCCEEECCCCHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHCC PAVSTHVGDVALAGSYMLGYTKVQQKDAIQLAAGEPLTDIFDDSVSQSAQLSAGVAPDTV CCCHHCCCCCCCCCCHHCCHHHHCCCCCEEEECCCCHHHHHHHHHCCCHHHCCCCCCCCE LPVGITASGSYYQEDVSNLDQRVRDMRAGVQVTYPVSLELALVGAVGYEDVEVSSRDAVR EEEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEECEEEEEEEEEECCCCCCCCCCCCCCC DADGDPVLGSDGRYLTDKSRPRQLAYETDGLTWDAGVMWRPSRRTALSAFVGRRYDSMTY CCCCCCEECCCCCCCCCCCCCCEEEEECCCEEECCCEEECCCHHHHHHHHHHCCCCCEEE YGSFSYNPDPRSSLTVAVYDNVSGFGGQVSRALRDLPTDFQVNRDPFNGQISGCAIGSQS EEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCEECCCCCCCEEEEEEECCCC GGCVNNALSSVASSVFRARGVNATYAHRVGRMQAGIGAGYIRRKYIAREDSVLGSVNGQV CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCC DESFYVDAGLNGPIDRRSSFAVSAYAAWFQSGASSLGDVTTIGANAAYFRNLTDRLVATA CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHH AVSLDSVNRKVIEDEVVASGLVGLRYSF HHHHHHHHHHHHHHHHHHHCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA