| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200334
Identifier: 87200334
GI number: 87200334
Start: 2463922
End: 2465049
Strand: Reverse
Name: 87200334
Synonym: Saro_2320
Alternate gene names: NA
Gene position: 2465049-2463922 (Counterclockwise)
Preceding gene: 87200340
Following gene: 87200333
Centisome position: 69.21
GC content: 66.49
Gene sequence:
>1128_bases ATGTTGAAGGCGTTGGTGCGGGCTGCCTGCCTGATGACGGGGGCGGCGGTGTTGGGTGCGGGCGGTGCAAGCGCTACGCC CGTAACGGATTGCCCGCTGGGCCGACAGGCGCTTTCCACGGCCTCTCCACTGAGCGACGTCCTGGCGGTTCCGCGGGCGC GGGCTGTACTGGATGAAGCATCGCCCGGGCTTGTGGAGGCGCTGACCAAGCCTTTCGGCGGAGGGACGCTGCCCCCCGGT TTCGACCGTATCGTCACGCCGAAGGCTCTACTCGGCATGGCGGGGAAGGGCGATGCTGCCTTCCTGACGAAGCTCGACGC GGCATTGGGGCGGATCAGGTTGACCAGGGCCGATGTCGTCGCCCGCTGCGCCAGTTATGACAACGAGCGGCCGGCGCTTC CTGCGAATCTGGCGCGCCCGGCGATCCTCGTATTCGGCAAGATCACCGGGTTTCGCGATGCGCCTTCGGTGGACGCTGCC GAGACCGCGCTGAAGGACATTGCCGCGCGGCATGGCTGGGGACTGGTGTTCACCGACAAGGGTGGCGTGTTCAACGCGGC CGACCTTTCGCGCTTCGATGCGGTGGTGTGGAACAACATCAGCGGCGATGCCCTGACGATCCCACAGCGCGCGGCATTCC GCAAGTGGATCGAACGCGGCGGCGGCTATGCCGGCATCCACGGTTCCGGCGGCGATCCGCAGTTCTTCTGGGACTGGTAT GCCGATACACTGGTGGGTGCGCGGTTCATCGGGCACCCGATGGCGCCGCAATTCCAGGAAGCGCGCGTGGTCGTCGAGGA CAAGGCGCATCCGGCCGCGTACGGTCTTCCGTCGGAATGGCGCATGACCGAGGAGTGGTATTCCTTCGATCGCAGCGTGC GCGGCAAGGCGCGGGTGATCGCTTCGCTTGATGAAAGCAGCTACAATCCGGGCGAGGGTTTCGGTCGCAAGCTGTCGATG GGCGACCATCCGATTGCGTGGTCGCAGTGCGTGGGCAGCGGGCGCAGTTTCTATACTGCTATCGGCCACCGCCCGGAGAG CTATGTCCAGCCCGAGAGCGTGAAGCTGCTCGAACAGGGCATCCTGTGGGCGGCGGGGCTGGCGCCCGAGGGCTGCGGCG GAAAGTGA
Upstream 100 bases:
>100_bases CTTTCATATCCGCGCCGTGTAGGACAGCGCTGCGATGGAGTTGGATTGACCGGCGCTGTCAGTGAGGGCAGGATGGCGAC GGAAAGCTTGGGAGATCGGG
Downstream 100 bases:
>100_bases AACCGGCCGATACCGGCGATTGCGCTTGCCAGGCATAGGCTGCACTCTGCCCCCATAACCAACCGGGGGTGGATATGGGA CTGAAGGCCGCTTGGGAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: Secreted Glycosyl Hydrolase; PKD Domain Containing Protein; Transcriptional Regulator; Crp/FNR Family Transcriptional Regulator; Sigma-70 Factor; Cytochrome C Class I; Crp/Fnr Family Transcriptional Regulator; Glucose/Sorbosone Dehydrogenase; LOW QUALITY PROTEIN Sigma-70 Factor; LPXTG-Motif Cell Wall Anchor Domain Protein; Glycoside Hydrolase Family; FG-GAP Repeat Protein; Pkd Domain Containing Protein; Secreted Protein; Class I Glutamine Amidotransferase-Like Protein
Number of amino acids: Translated: 375; Mature: 375
Protein sequence:
>375_residues MLKALVRAACLMTGAAVLGAGGASATPVTDCPLGRQALSTASPLSDVLAVPRARAVLDEASPGLVEALTKPFGGGTLPPG FDRIVTPKALLGMAGKGDAAFLTKLDAALGRIRLTRADVVARCASYDNERPALPANLARPAILVFGKITGFRDAPSVDAA ETALKDIAARHGWGLVFTDKGGVFNAADLSRFDAVVWNNISGDALTIPQRAAFRKWIERGGGYAGIHGSGGDPQFFWDWY ADTLVGARFIGHPMAPQFQEARVVVEDKAHPAAYGLPSEWRMTEEWYSFDRSVRGKARVIASLDESSYNPGEGFGRKLSM GDHPIAWSQCVGSGRSFYTAIGHRPESYVQPESVKLLEQGILWAAGLAPEGCGGK
Sequences:
>Translated_375_residues MLKALVRAACLMTGAAVLGAGGASATPVTDCPLGRQALSTASPLSDVLAVPRARAVLDEASPGLVEALTKPFGGGTLPPG FDRIVTPKALLGMAGKGDAAFLTKLDAALGRIRLTRADVVARCASYDNERPALPANLARPAILVFGKITGFRDAPSVDAA ETALKDIAARHGWGLVFTDKGGVFNAADLSRFDAVVWNNISGDALTIPQRAAFRKWIERGGGYAGIHGSGGDPQFFWDWY ADTLVGARFIGHPMAPQFQEARVVVEDKAHPAAYGLPSEWRMTEEWYSFDRSVRGKARVIASLDESSYNPGEGFGRKLSM GDHPIAWSQCVGSGRSFYTAIGHRPESYVQPESVKLLEQGILWAAGLAPEGCGGK >Mature_375_residues MLKALVRAACLMTGAAVLGAGGASATPVTDCPLGRQALSTASPLSDVLAVPRARAVLDEASPGLVEALTKPFGGGTLPPG FDRIVTPKALLGMAGKGDAAFLTKLDAALGRIRLTRADVVARCASYDNERPALPANLARPAILVFGKITGFRDAPSVDAA ETALKDIAARHGWGLVFTDKGGVFNAADLSRFDAVVWNNISGDALTIPQRAAFRKWIERGGGYAGIHGSGGDPQFFWDWY ADTLVGARFIGHPMAPQFQEARVVVEDKAHPAAYGLPSEWRMTEEWYSFDRSVRGKARVIASLDESSYNPGEGFGRKLSM GDHPIAWSQCVGSGRSFYTAIGHRPESYVQPESVKLLEQGILWAAGLAPEGCGGK
Specific function: Unknown
COG id: COG3828
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39724; Mature: 39724
Theoretical pI: Translated: 8.21; Mature: 8.21
Prosite motif: PS01159 WW_DOMAIN_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKALVRAACLMTGAAVLGAGGASATPVTDCPLGRQALSTASPLSDVLAVPRARAVLDEA CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHCCHHHHHHHCC SPGLVEALTKPFGGGTLPPGFDRIVTPKALLGMAGKGDAAFLTKLDAALGRIRLTRADVV CCHHHHHHHCCCCCCCCCCCCCHHCCCHHHHCCCCCCCHHHHHHHHHHHHHEEHHHHHHH ARCASYDNERPALPANLARPAILVFGKITGFRDAPSVDAAETALKDIAARHGWGLVFTDK HHHHCCCCCCCCCCHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECC GGVFNAADLSRFDAVVWNNISGDALTIPQRAAFRKWIERGGGYAGIHGSGGDPQFFWDWY CCEECHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHCCCEEEECCCCCCCCEEHHHH ADTLVGARFIGHPMAPQFQEARVVVEDKAHPAAYGLPSEWRMTEEWYSFDRSVRGKARVI HHHHHHHHHHCCCCCCCHHHCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEE ASLDESSYNPGEGFGRKLSMGDHPIAWSQCVGSGRSFYTAIGHRPESYVQPESVKLLEQG EECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEHHHCCCCHHHCCCHHHHHHHHC ILWAAGLAPEGCGGK CCEECCCCCCCCCCC >Mature Secondary Structure MLKALVRAACLMTGAAVLGAGGASATPVTDCPLGRQALSTASPLSDVLAVPRARAVLDEA CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHCCHHHHHHHCC SPGLVEALTKPFGGGTLPPGFDRIVTPKALLGMAGKGDAAFLTKLDAALGRIRLTRADVV CCHHHHHHHCCCCCCCCCCCCCHHCCCHHHHCCCCCCCHHHHHHHHHHHHHEEHHHHHHH ARCASYDNERPALPANLARPAILVFGKITGFRDAPSVDAAETALKDIAARHGWGLVFTDK HHHHCCCCCCCCCCHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECC GGVFNAADLSRFDAVVWNNISGDALTIPQRAAFRKWIERGGGYAGIHGSGGDPQFFWDWY CCEECHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHCCCEEEECCCCCCCCEEHHHH ADTLVGARFIGHPMAPQFQEARVVVEDKAHPAAYGLPSEWRMTEEWYSFDRSVRGKARVI HHHHHHHHHHCCCCCCCHHHCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEE ASLDESSYNPGEGFGRKLSMGDHPIAWSQCVGSGRSFYTAIGHRPESYVQPESVKLLEQG EECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEHHHCCCCHHHCCCHHHHHHHHC ILWAAGLAPEGCGGK CCEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA