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The map label for this gene is xseB

Identifier: 87200268

GI number: 87200268

Start: 2393557

End: 2393808

Strand: Reverse

Name: xseB

Synonym: Saro_2254

Alternate gene names: 87200268

Gene position: 2393808-2393557 (Counterclockwise)

Preceding gene: 87200271

Following gene: 87200267

Centisome position: 67.21

GC content: 64.29

Gene sequence:

>252_bases
ATGGGAACCGTACCTGAACTGGCCAGTCTCAGCTTCGAAGAGGCTCTGAAGGAACTCGAGAACGTCGTCAGGCGACTGGA
GAGCGGGGAAGCACCGCTCGACGAGTCGATCGAACTCTATGCCCGCGGAGACGCGCTGCGCGCGCATTGCCAGGCCCGCC
TCGATGCGGCGCAGGCGCGAATCGAAGCGATCGTGGCCGACCGTGACGGCAAGGCCCAAGGCCTTCGTCCGTTCGACGAA
ACCGTCGGTTGA

Upstream 100 bases:

>100_bases
GGCGACGTAGGCCATTACATAGGACATGGCACTTCGTACCTCCCGGGAAGATGCGCATCGAAGCTTGACCATGCGTTCCC
GCGCCGTCAATGCTGCCCCA

Downstream 100 bases:

>100_bases
GCGATAACGCCATGTCGGCTGACACGTCGGAAGGACCGGGCCTCCTCAAGCCAGCCCTTGCGGCTATCGCCGAGGACATC
GACCGCAGCTTCGACCTGCT

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 83; Mature: 82

Protein sequence:

>83_residues
MGTVPELASLSFEEALKELENVVRRLESGEAPLDESIELYARGDALRAHCQARLDAAQARIEAIVADRDGKAQGLRPFDE
TVG

Sequences:

>Translated_83_residues
MGTVPELASLSFEEALKELENVVRRLESGEAPLDESIELYARGDALRAHCQARLDAAQARIEAIVADRDGKAQGLRPFDE
TVG
>Mature_82_residues
GTVPELASLSFEEALKELENVVRRLESGEAPLDESIELYARGDALRAHCQARLDAAQARIEAIVADRDGKAQGLRPFDET
VG

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_NOVAD (Q2G632)

Other databases:

- EMBL:   CP000248
- RefSeq:   YP_497525.1
- ProteinModelPortal:   Q2G632
- SMR:   Q2G632
- STRING:   Q2G632
- GeneID:   3916570
- GenomeReviews:   CP000248_GR
- KEGG:   nar:Saro_2254
- eggNOG:   COG1722
- HOGENOM:   HBG728416
- OMA:   ENANTAD
- ProtClustDB:   PRK00977
- BioCyc:   NARO279238:SARO_2254-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 9037; Mature: 8906

Theoretical pI: Translated: 4.31; Mature: 4.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTVPELASLSFEEALKELENVVRRLESGEAPLDESIELYARGDALRAHCQARLDAAQAR
CCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHH
IEAIVADRDGKAQGLRPFDETVG
HHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GTVPELASLSFEEALKELENVVRRLESGEAPLDESIELYARGDALRAHCQARLDAAQAR
CCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHH
IEAIVADRDGKAQGLRPFDETVG
HHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA