| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200239
Identifier: 87200239
GI number: 87200239
Start: 2367208
End: 2367798
Strand: Direct
Name: 87200239
Synonym: Saro_2224
Alternate gene names: NA
Gene position: 2367208-2367798 (Clockwise)
Preceding gene: 87200237
Following gene: 87200240
Centisome position: 66.47
GC content: 68.02
Gene sequence:
>591_bases ATGGCCGACACGACGATGACCCCCGCCGACGCCCCGAAGAAGCGCACCACCGCCCGCAAGGCCGACACCGTGACGGCAGC CGCGGCTGCTCCGGTTGCCACCGATGCGGCGGCGGACACCAGCGCCAAGGGCCGGTTCTCCAAGGCCATCGAAGAAGCCA AGGCAGGCGCGGAAGCGCTGCGCGGCGAAGCGATGGAAAAGGGCGCCGCCTACAAGGCCAAGGTCGGCGGCACCGCCACC GACTGGATGGAGGAAGCCAAGGTCTATGCCGGCCAGGCCAAGGAGAAGGGCGCAGCGCTTGCCGTGGAAGGCAAGACCCG CGCCAGTGACGCGCTGAGCACGCTGGGCAAGACCATCTCCGACAACGCCGCCACCATCGATGAAAAGCTTGGCGTGCAGT ACGGCGATTATGCCCGCACCGCCGCCCGCTCGATCCAGGAAACTGCCGCAAAGCTCGAGGCCAAGGACCTCAACGAGCTT GGCGACGACGTGAAGGAATTCGTGCGCAAGAGCCCGGGCGTGGCCATCGGCATCGCCGCCGTTGCCGGCTTCGCGATCGC CCGGATGCTCTCGGGCGGATCGGACGACTGA
Upstream 100 bases:
>100_bases GCCTTGCCTCTTGCCTTTGTGCGTTCGGGGGTAGCAAGATGGCGCGGACCGCCCATATCGTAGCGGCGCAGCCGCGCGAC ACGCCGAAGGGAAACGAGAC
Downstream 100 bases:
>100_bases CGGCCGCGGGCCGACGTCCGATGAAAACGACGGACTCACACCAAAGCCCGGCAGTCGAGCCGGTCGCGCCGTCGCTGACG GACGCGGTCCGGACGATGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 196; Mature: 195
Protein sequence:
>196_residues MADTTMTPADAPKKRTTARKADTVTAAAAAPVATDAAADTSAKGRFSKAIEEAKAGAEALRGEAMEKGAAYKAKVGGTAT DWMEEAKVYAGQAKEKGAALAVEGKTRASDALSTLGKTISDNAATIDEKLGVQYGDYARTAARSIQETAAKLEAKDLNEL GDDVKEFVRKSPGVAIGIAAVAGFAIARMLSGGSDD
Sequences:
>Translated_196_residues MADTTMTPADAPKKRTTARKADTVTAAAAAPVATDAAADTSAKGRFSKAIEEAKAGAEALRGEAMEKGAAYKAKVGGTAT DWMEEAKVYAGQAKEKGAALAVEGKTRASDALSTLGKTISDNAATIDEKLGVQYGDYARTAARSIQETAAKLEAKDLNEL GDDVKEFVRKSPGVAIGIAAVAGFAIARMLSGGSDD >Mature_195_residues ADTTMTPADAPKKRTTARKADTVTAAAAAPVATDAAADTSAKGRFSKAIEEAKAGAEALRGEAMEKGAAYKAKVGGTATD WMEEAKVYAGQAKEKGAALAVEGKTRASDALSTLGKTISDNAATIDEKLGVQYGDYARTAARSIQETAAKLEAKDLNELG DDVKEFVRKSPGVAIGIAAVAGFAIARMLSGGSDD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20002; Mature: 19871
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADTTMTPADAPKKRTTARKADTVTAAAAAPVATDAAADTSAKGRFSKAIEEAKAGAEAL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHH RGEAMEKGAAYKAKVGGTATDWMEEAKVYAGQAKEKGAALAVEGKTRASDALSTLGKTIS HHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHC DNAATIDEKLGVQYGDYARTAARSIQETAAKLEAKDLNELGDDVKEFVRKSPGVAIGIAA CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHH VAGFAIARMLSGGSDD HHHHHHHHHHCCCCCC >Mature Secondary Structure ADTTMTPADAPKKRTTARKADTVTAAAAAPVATDAAADTSAKGRFSKAIEEAKAGAEAL CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHH RGEAMEKGAAYKAKVGGTATDWMEEAKVYAGQAKEKGAALAVEGKTRASDALSTLGKTIS HHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHC DNAATIDEKLGVQYGDYARTAARSIQETAAKLEAKDLNELGDDVKEFVRKSPGVAIGIAA CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHH VAGFAIARMLSGGSDD HHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA