Definition Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome.
Accession NC_007794
Length 3,561,584

Click here to switch to the map view.

The map label for this gene is 87200237

Identifier: 87200237

GI number: 87200237

Start: 2365068

End: 2365595

Strand: Direct

Name: 87200237

Synonym: Saro_2222

Alternate gene names: NA

Gene position: 2365068-2365595 (Clockwise)

Preceding gene: 87200236

Following gene: 87200239

Centisome position: 66.4

GC content: 64.77

Gene sequence:

>528_bases
ATGGACAGGGATCAATTGAAAGCGCGCGCCCGCCGCCTGATCGCAACTGCCAACGAACTTCTAGCACTCGCGCATGACCT
CGAATTCCATGGAGATGACGCCCGGATCGAAGAGACCGCTCCCGGCCGTCCGCCGAAGGACAGCCCAGCGTGGGCCGAAA
TTGCCCGCATCGCCTATCGCGAACGACGCCGCCGCGCCGAGGTATTCTCGGATCCCAGCCTGTTCGGGGAACCGGCATGG
GACATCCTGCTGGACCTTTTCATCGCAGCCAAGGAACGCAAGCGCCTCCCCGTCACCAGCGCCTGCATCGGCGCGGCAGT
CCCCGCCACCACCGCCCTGCGCTGGCTCACGGTGCTTGAGGAAAAGGGCCTGATCGTGCGCGAGAACGACACGGCCGACG
CACGCCGCGTCTTCGTCCGTCTCTCGACCGAAGGCTACGAAAAGATGATCGCCTACTTCTCCGGCCAGGCTGCAGAGTTT
CGTCCCGACGAGGAATACGCCGCGACCACCTGGCGCAAGGCGCGATAG

Upstream 100 bases:

>100_bases
AAGTTCCCTTCTGGTCGATTTACGCAACTACCTCGATACCCTTCTCCACGCCCGGAGTTTCGGGGCAGCGGACGGAACGC
AGGACAGGGGGATCATGCGG

Downstream 100 bases:

>100_bases
CCTCGACCGCGATCCTCCCGGATCACGTGAGCCCCGAGGTCCGAAACGCAAAAAGGGCGGCCCCGTGAGGCCGCCCTTTT
CGTGTTTCGCAATGAAGCGC

Product: regulatory protein, MarR

Products: NA

Alternate protein names: DNA Repair Protein RadC; MarR-Family Transcriptional Regulator; Regulatory Protein; Regulatory Protein MarR; Response Regulator Receiver Protein

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MDRDQLKARARRLIATANELLALAHDLEFHGDDARIEETAPGRPPKDSPAWAEIARIAYRERRRRAEVFSDPSLFGEPAW
DILLDLFIAAKERKRLPVTSACIGAAVPATTALRWLTVLEEKGLIVRENDTADARRVFVRLSTEGYEKMIAYFSGQAAEF
RPDEEYAATTWRKAR

Sequences:

>Translated_175_residues
MDRDQLKARARRLIATANELLALAHDLEFHGDDARIEETAPGRPPKDSPAWAEIARIAYRERRRRAEVFSDPSLFGEPAW
DILLDLFIAAKERKRLPVTSACIGAAVPATTALRWLTVLEEKGLIVRENDTADARRVFVRLSTEGYEKMIAYFSGQAAEF
RPDEEYAATTWRKAR
>Mature_175_residues
MDRDQLKARARRLIATANELLALAHDLEFHGDDARIEETAPGRPPKDSPAWAEIARIAYRERRRRAEVFSDPSLFGEPAW
DILLDLFIAAKERKRLPVTSACIGAAVPATTALRWLTVLEEKGLIVRENDTADARRVFVRLSTEGYEKMIAYFSGQAAEF
RPDEEYAATTWRKAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19871; Mature: 19871

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRDQLKARARRLIATANELLALAHDLEFHGDDARIEETAPGRPPKDSPAWAEIARIAYR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
ERRRRAEVFSDPSLFGEPAWDILLDLFIAAKERKRLPVTSACIGAAVPATTALRWLTVLE
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
EKGLIVRENDTADARRVFVRLSTEGYEKMIAYFSGQAAEFRPDEEYAATTWRKAR
HCCCEEECCCCHHHHEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MDRDQLKARARRLIATANELLALAHDLEFHGDDARIEETAPGRPPKDSPAWAEIARIAYR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
ERRRRAEVFSDPSLFGEPAWDILLDLFIAAKERKRLPVTSACIGAAVPATTALRWLTVLE
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
EKGLIVRENDTADARRVFVRLSTEGYEKMIAYFSGQAAEFRPDEEYAATTWRKAR
HCCCEEECCCCHHHHEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA