| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200227
Identifier: 87200227
GI number: 87200227
Start: 2356063
End: 2356587
Strand: Reverse
Name: 87200227
Synonym: Saro_2212
Alternate gene names: NA
Gene position: 2356587-2356063 (Counterclockwise)
Preceding gene: 87200228
Following gene: 87200226
Centisome position: 66.17
GC content: 65.14
Gene sequence:
>525_bases ATGGACAGTCAGTCTGAAAATGGAAGCGGCGCGGGCAACCGCACATCGATCGAGCGCAGGGGCGATCGCGAGCTCGTCGT GACGCGGACATTCGATGCGCCGCGCGCGATGGTCTACCGCGCGTGGAGCGAGCCTGAGCTGTTCCGGCGCTGGTGGATGC CCAAATCCGCAACCGGCGTCACGCTCGTCTCGTGCGACATGGATGTGCGCACCGGCGGCAAGTACCGGCTGGAATTCAGC ACCGGCGGTCCGCAAACAATGGCCTTCTACGGCAAGTACCTCGACGTCGTGCCGAACGAGCGGATCGTCTGGACCAATGA CGAGGGCGAGGCCGACGCGGGCGAGAAAGGCGCGATCACCACGGTCACCTTCGAGGACCATGGCAGCCAGACGCTGCTGC GCTTCCACGAAGTCTATCCGACAGCAGAGGCGCTCGAGGAGGCGCTGCAAGGCTCCGCCGCCGCATTGCCCGAGCAATTC GACCAGCTAGGCGAAGTGCTGTCCGGCTCGGGAGGCAAGCAGTGA
Upstream 100 bases:
>100_bases GATGCGGAGGCGGCGTGGATCGAGGCGCACCGCAAGCTGTTCGAAGCCCGCTTTGAGGCACTGGACGGGATTCTCGGTGA AATGAAAGCGGAGGAACGCG
Downstream 100 bases:
>100_bases AGCGATGGGAAAGGTGGTGGACGCACTAGGGCTCGAACCTAGGACCCGCTGATTAAGAGCCATGATCAGAGGGTCCTAGC GCGTCCGCATGGGTCCAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 174; Mature: 174
Protein sequence:
>174_residues MDSQSENGSGAGNRTSIERRGDRELVVTRTFDAPRAMVYRAWSEPELFRRWWMPKSATGVTLVSCDMDVRTGGKYRLEFS TGGPQTMAFYGKYLDVVPNERIVWTNDEGEADAGEKGAITTVTFEDHGSQTLLRFHEVYPTAEALEEALQGSAAALPEQF DQLGEVLSGSGGKQ
Sequences:
>Translated_174_residues MDSQSENGSGAGNRTSIERRGDRELVVTRTFDAPRAMVYRAWSEPELFRRWWMPKSATGVTLVSCDMDVRTGGKYRLEFS TGGPQTMAFYGKYLDVVPNERIVWTNDEGEADAGEKGAITTVTFEDHGSQTLLRFHEVYPTAEALEEALQGSAAALPEQF DQLGEVLSGSGGKQ >Mature_174_residues MDSQSENGSGAGNRTSIERRGDRELVVTRTFDAPRAMVYRAWSEPELFRRWWMPKSATGVTLVSCDMDVRTGGKYRLEFS TGGPQTMAFYGKYLDVVPNERIVWTNDEGEADAGEKGAITTVTFEDHGSQTLLRFHEVYPTAEALEEALQGSAAALPEQF DQLGEVLSGSGGKQ
Specific function: Unknown
COG id: COG3832
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19190; Mature: 19190
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSQSENGSGAGNRTSIERRGDRELVVTRTFDAPRAMVYRAWSEPELFRRWWMPKSATGV CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCHHHHHHHCCCCCCCCE TLVSCDMDVRTGGKYRLEFSTGGPQTMAFYGKYLDVVPNERIVWTNDEGEADAGEKGAIT EEEEECCEECCCCEEEEEECCCCCEEEHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEE TVTFEDHGSQTLLRFHEVYPTAEALEEALQGSAAALPEQFDQLGEVLSGSGGKQ EEEECCCCCHHHHHHHHHCCCHHHHHHHHCCCHHCCHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MDSQSENGSGAGNRTSIERRGDRELVVTRTFDAPRAMVYRAWSEPELFRRWWMPKSATGV CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCHHHHHHHCCCCCCCCE TLVSCDMDVRTGGKYRLEFSTGGPQTMAFYGKYLDVVPNERIVWTNDEGEADAGEKGAIT EEEEECCEECCCCEEEEEECCCCCEEEHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEE TVTFEDHGSQTLLRFHEVYPTAEALEEALQGSAAALPEQFDQLGEVLSGSGGKQ EEEECCCCCHHHHHHHHHCCCHHHHHHHHCCCHHCCHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA