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The map label for this gene is intS [C]

Identifier: 87200226

GI number: 87200226

Start: 2354601

End: 2355872

Strand: Reverse

Name: intS [C]

Synonym: Saro_2211

Alternate gene names: 87200226

Gene position: 2355872-2354601 (Counterclockwise)

Preceding gene: 87200227

Following gene: 87200224

Centisome position: 66.15

GC content: 57.55

Gene sequence:

>1272_bases
ATGGCGAACAAAGTAGGTTTGACGGATGCAAAGATCGCAGGGCTGAAGGCGCCTGCTGCGGGTCAGATTGAGCTCGCCGA
TGGCATCGTACCCGGTCTTAGGCTCCGCATGGGCGCCAGTGGTATCAAGACGTACATTCTGCGCAAGCGGGTTCAGGGCA
AATGGCTGAATGTGACAATCGGACGTCATGGGCCAAGCTTTACACTGGCCCATGCTCGCAAGAAGGCGCGCGATCTGCTC
GTGGATGTCGAGCAGGGCAAGAGCATCGCTAGAAAAGCGGGCGCAAAGAGGAAGGGATCAAAAGGCGTCGGGACAGTCGC
GGAGCTCTACGAGACGTACCTCGCTCAGCAGATCGAGGGCAAAAAGCGGAGCGCGAGGGAGTTCGATCGAGTGTTCCGAA
AATACATCGAGCCCGAGATTGGAGACCGGCTCGCGGACTCCATAACCCGAAGTGACGTGAGCCGCTTCGTTGAGAAAATT
GCGTTCGAGCGGGGCAAGGAAACCCTGACGATGGCGCGGATCGTGTATCGCCACCTTTCAACTTTCTACACTTGGGCCCT
CACCAGATTGGAGCATATGCCCGCCAATCCTTGCCGGGATGCATGGCGGCCGAAGCGGAATGAGCCTCGCGACCGTGTAC
TCAGCGACCGTGAGCTTGCTGCGCTGTGGCAATCTGCGGTCGAGGATGGCTATCCGTTCGGCCATCTCGTGCAGATGCTA
ATCCTTACGGCTCAACGCAGAGGTGAAGTGCTTGATGCCGCGTGCGACGAGTTCGACTTCAAAGCCAAGGTCTGGACCGT
CCCAGGTGATCGAGCAAAAAACGGCAAGGCCAATGTGGTGCCAATATCCGCTCAGGCTCTTGGAGTGATCACCGAGATAT
TCCGGGCTGCCGGGATTGACCCCGATGACGCCCACAAACAATCCCAGATCCTGTTGGCTTCGAAGGTCACCAATACGAAC
AGTGTCAGCGGACTATCCAAGGCCTGGAAGCGGATCAGAGCAAGCGTGGACGAGAAGCTCGGCTACGAAGCCGGACACTT
CACAATGCATGATATTCGACGGACGGTGGCGACCGGCCTCCAGCGTCTTGGCATACCGTTGGTGGTTTCTGAGGCGGTCC
TGAATCACCAATCAGGATCAGCTATGGCTGGCGTCGCTGGGGTCTATCACCGTCACCAGTATACCAACGAGAAACGGGAG
GCGTTGGCGCTGTGGGGTAAGGAGGTAATGCAGATTGCAGCCAAGTACCCAGTCGAAGTCAAAGACGGCTGA

Upstream 100 bases:

>100_bases
GGGTCCAAAAATGGCGGAAATCTGCCATTCATAGTCCGCATTGTTCTTGAAATGTTCGCCAGTATCCACTACAAAAAGCT
ACCTAAGGTAGCAGGTACAT

Downstream 100 bases:

>100_bases
TCTCACAGGGGGTCGCAACCGCTGCAAATCCGCCCAGCTAGAAACCGCAGGATGATGGGCCGTGCTCTGGCCATCGTGTG
TCGATCTTTAGAAACGCCAT

Product: phage integrase

Products: NA

Alternate protein names: Integrase; Phage Integrase Family Protein; Phage Integrase; Site-Specific Recombinase Phage Integrase Family Protein; Phage Integrase Family Site Specific Recombinase; Phage-Related Integrase; Prophage Integrase; Site-Specific Recombinase Phage Integrase Family; Phage-Like Integrase; Integrase Or Site-Specific Recombinase; Integrase Of Prophage; Symbiosis Island Integrase; DNA Integration/Recombination/Inversion Protein; Prophage INTEGRASE PROTEIN; Integrase/Recombinase Phage Integrase; Integrase-Like Protein; Integrase Protein; DNA Integration/Recombination/Invertion Protein; Phage Integrase-Like Protein; Phage DNA Recombinase; CP4-Like Integrase; Integrase DNA Protein; Phage Integrase Family; Integrative Genetic Element

Number of amino acids: Translated: 423; Mature: 422

Protein sequence:

>423_residues
MANKVGLTDAKIAGLKAPAAGQIELADGIVPGLRLRMGASGIKTYILRKRVQGKWLNVTIGRHGPSFTLAHARKKARDLL
VDVEQGKSIARKAGAKRKGSKGVGTVAELYETYLAQQIEGKKRSAREFDRVFRKYIEPEIGDRLADSITRSDVSRFVEKI
AFERGKETLTMARIVYRHLSTFYTWALTRLEHMPANPCRDAWRPKRNEPRDRVLSDRELAALWQSAVEDGYPFGHLVQML
ILTAQRRGEVLDAACDEFDFKAKVWTVPGDRAKNGKANVVPISAQALGVITEIFRAAGIDPDDAHKQSQILLASKVTNTN
SVSGLSKAWKRIRASVDEKLGYEAGHFTMHDIRRTVATGLQRLGIPLVVSEAVLNHQSGSAMAGVAGVYHRHQYTNEKRE
ALALWGKEVMQIAAKYPVEVKDG

Sequences:

>Translated_423_residues
MANKVGLTDAKIAGLKAPAAGQIELADGIVPGLRLRMGASGIKTYILRKRVQGKWLNVTIGRHGPSFTLAHARKKARDLL
VDVEQGKSIARKAGAKRKGSKGVGTVAELYETYLAQQIEGKKRSAREFDRVFRKYIEPEIGDRLADSITRSDVSRFVEKI
AFERGKETLTMARIVYRHLSTFYTWALTRLEHMPANPCRDAWRPKRNEPRDRVLSDRELAALWQSAVEDGYPFGHLVQML
ILTAQRRGEVLDAACDEFDFKAKVWTVPGDRAKNGKANVVPISAQALGVITEIFRAAGIDPDDAHKQSQILLASKVTNTN
SVSGLSKAWKRIRASVDEKLGYEAGHFTMHDIRRTVATGLQRLGIPLVVSEAVLNHQSGSAMAGVAGVYHRHQYTNEKRE
ALALWGKEVMQIAAKYPVEVKDG
>Mature_422_residues
ANKVGLTDAKIAGLKAPAAGQIELADGIVPGLRLRMGASGIKTYILRKRVQGKWLNVTIGRHGPSFTLAHARKKARDLLV
DVEQGKSIARKAGAKRKGSKGVGTVAELYETYLAQQIEGKKRSAREFDRVFRKYIEPEIGDRLADSITRSDVSRFVEKIA
FERGKETLTMARIVYRHLSTFYTWALTRLEHMPANPCRDAWRPKRNEPRDRVLSDRELAALWQSAVEDGYPFGHLVQMLI
LTAQRRGEVLDAACDEFDFKAKVWTVPGDRAKNGKANVVPISAQALGVITEIFRAAGIDPDDAHKQSQILLASKVTNTNS
VSGLSKAWKRIRASVDEKLGYEAGHFTMHDIRRTVATGLQRLGIPLVVSEAVLNHQSGSAMAGVAGVYHRHQYTNEKREA
LALWGKEVMQIAAKYPVEVKDG

Specific function: Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From The Host Genome. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693166, Length=424, Percent_Identity=24.2924528301887, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46901; Mature: 46769

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANKVGLTDAKIAGLKAPAAGQIELADGIVPGLRLRMGASGIKTYILRKRVQGKWLNVTI
CCCCCCCCCHHHCCCCCCCCCCEECCCCCCCCHHHHHCHHHHHHHHHHHHHCCCEEEEEE
GRHGPSFTLAHARKKARDLLVDVEQGKSIARKAGAKRKGSKGVGTVAELYETYLAQQIEG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC
KKRSAREFDRVFRKYIEPEIGDRLADSITRSDVSRFVEKIAFERGKETLTMARIVYRHLS
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
TFYTWALTRLEHMPANPCRDAWRPKRNEPRDRVLSDRELAALWQSAVEDGYPFGHLVQML
HHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHH
ILTAQRRGEVLDAACDEFDFKAKVWTVPGDRAKNGKANVVPISAQALGVITEIFRAAGID
HHHHHHCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEEEECHHHHHHHHHHHHHCCCC
PDDAHKQSQILLASKVTNTNSVSGLSKAWKRIRASVDEKLGYEAGHFTMHDIRRTVATGL
CCHHHHHHHEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
QRLGIPLVVSEAVLNHQSGSAMAGVAGVYHRHQYTNEKREALALWGKEVMQIAAKYPVEV
HHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCEEE
KDG
CCC
>Mature Secondary Structure 
ANKVGLTDAKIAGLKAPAAGQIELADGIVPGLRLRMGASGIKTYILRKRVQGKWLNVTI
CCCCCCCCHHHCCCCCCCCCCEECCCCCCCCHHHHHCHHHHHHHHHHHHHCCCEEEEEE
GRHGPSFTLAHARKKARDLLVDVEQGKSIARKAGAKRKGSKGVGTVAELYETYLAQQIEG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC
KKRSAREFDRVFRKYIEPEIGDRLADSITRSDVSRFVEKIAFERGKETLTMARIVYRHLS
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
TFYTWALTRLEHMPANPCRDAWRPKRNEPRDRVLSDRELAALWQSAVEDGYPFGHLVQML
HHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHH
ILTAQRRGEVLDAACDEFDFKAKVWTVPGDRAKNGKANVVPISAQALGVITEIFRAAGID
HHHHHHCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEEEECHHHHHHHHHHHHHCCCC
PDDAHKQSQILLASKVTNTNSVSGLSKAWKRIRASVDEKLGYEAGHFTMHDIRRTVATGL
CCHHHHHHHEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
QRLGIPLVVSEAVLNHQSGSAMAGVAGVYHRHQYTNEKREALALWGKEVMQIAAKYPVEV
HHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCEEE
KDG
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA