| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is traD [H]
Identifier: 87200200
GI number: 87200200
Start: 2325969
End: 2328365
Strand: Reverse
Name: traD [H]
Synonym: Saro_2184
Alternate gene names: 87200200
Gene position: 2328365-2325969 (Counterclockwise)
Preceding gene: 87200201
Following gene: 87200199
Centisome position: 65.37
GC content: 63.29
Gene sequence:
>2397_bases ATGAAGCGTAATCTCGTCAACTTCACGCGTGGCAGCCAGCTGCTCGGACACTTCAGCTTCATGTTCGCGGCGGGTCTCAA GGGCCCATTGATTGTCGCCGCGCTCGTGATCTCATGGACCTCCTGGTGGACCATTTCGGCAGGCCTCACCGACCATGAAG TCTACCTCGTCTGGATGCGGATCTATGCCGCCATCTACGGCTTCATGGAGTTCGATGCCGCCAAGCGGATCACCCTGGAA ACTGCCTTTGGCGCGACCATTCAGTTTCCGATTGCGCAGCTCGAAAGCTATCCGCCGGTGGTCCATGCGTGGGAGAAGCT GACTGCGCTTCTGACCAGTGCCTTATGGCGGTCCGGCTTCCTCCTGGTCCCCGTCTTTGCCGTCTTTTACTGGTTCGCCG AGCGGTTCGGCGGCCGCTCCAAAGAACGCAAACATGAGCGCGGCGCGATGCTCGTCACGCTCCCCGAGCTTGTCGATGAA CTGACCGCGCACAACCGGCGCGAGCGCACCCGTGAGCTCGATTCCGCGCTGGGCTGGAAATGGCGGCTCAGCCTGCCGCG AGAGATCGCCCGGGTCTTTCCTTATCGGCCATCGCACATCGCCACGGTCTCCTATCCCTGGCGGCTCGAACAAAGCCATG CGATGCTCATTGGTACCACCGGTATGGGCAAGACCGTGGCAATCTCCGACATGATTGCGGAAGCCAGAGCCAAGGGCCAG CGCTGTGTGGTCTTCGATTTGACCGGCGCCTTTATCGAGCACTTCCATGCGGCCCATTGCGACATCATCCTGAACCCGCT CGATGCGCGTTGCCCCCAGTGGAGCCTGTTTGACGAATGCCGTTCTGAAGGCGAGTTCTGGGCCGCGGCGGACGCCCTCG TCCCCCACGACGGGGGCGGAGAAGCCCAGTTCTGGGTGATCGCTGCACGAGCCCTGTTCGTCGAATTCTGCCTCAAACTT GTGGCTGAGGGCAGGGCGACCAACGACGCCCTGGCCCGTGAGCTGATGACCGCGGACCTGTCGCGTGTTCATGCCATGAT GCGAGGTACGATCGCCGATCCTCTGACCGCGCCGGAAGCTGCCCGCATGGCAGAATCGATCCGGGCCGTCTTCAACGTGA ACGCCAAGGCGCTCAAGCTGCTGCCGACTGCCGGACCTCGTTTCTCGGTCCGCCAGTGGATCGAGGACGGGGCCGACAGC GCCACAAGCGAAGGCTCGATCCTGTTCATTTCGGCCCGCTATGTCGACATGAGCGTCTGCGCGCAGTTGCTTACGCTCTG GCTCGACACGGCCATGAACACGCTGATGACGATGCCCCGCACCCGCGATCTCAAGTGCTGGTTCTTCGTCGATGAGCTGG GAGCATTGCACCGCCTGCCAGCCCTCGAGAAAGGCTTGCAGACGGCGCGCAATTTCGGCGGCGCGATTGTTCTTGGCCTG CACGCCTATGCCAAGCTCAAGGAGGTCTACGGCGAGAACATGGCGATGACGCTGGCATCGCTTGCCCGGACCAAACTGAT CCTTGGAACCGCCGACCGCGAAACGGCCACCTGGTGCTCCGACTTCATCGGCCATCGCCAGGTCAGGGACATGGAAGAGG GCTACACTTACGGCTACAACAATGCCCGCGATGCGGTCAGCCTGACCCCGCGCAAGCATATCGAGCCGCTCCTGCTGCCT GACCAGCTGATGAACCTGCCGCGCTTGTCGGGGTACATCAAGTTCCCCGACGGCTTTCCCGCCGCACCGATCAAGCTGAA GCCCGTCGACCGACCCAAGCGGGCGGAGACCTTCATTGCCAGGGTCAAGGAAAGCCCGAAGGCAAGGGTCACGGTGCCCC ATCCGGCGGCGGAGCAGGCCGAGCAGAAGGCAGCGCCAACAGGCAGCGAGCATCCCTCGTCCAACGATGACGGAGCGGGC AAGCCGGTCGTCCCAAAGCAGGGCGAACTGGCGCTGGATCAGGGACCGAAAGCCGCGCCGAGACAGGAGCCTGACGCGCC AGCCAAGGATATTGGGCGAGCAGTGGAACACCCACCCGGCAAGACGTCGAAGGAGCGGGAGCCGGCAGCTCGCTCAGGGC AAGACAAGGCGGGCAAGGCCAGGAAGGAGCAGTCGAATACCAGAACCGATGCGCGTGCGCGTAAAGCTGGACCTTCCGCC CGCCCACTTCTCCCGACAGGCGAAGCCGCAGCTGCGCCGGATCAGTCGGCTTCGCCTAAGGGCACGCCCCAGGCCAGCAC GCCCGGAACGGAAGGGCTGCAACAGGGCAAGCCGGATAACCCGAAGAGCCAAAGCTCCCGCGATGCCGCCGCGCGCAAGC TGATGATCGAGGATGGTTTGCGGGAGCACGAGCCTCCGCCGATCACTGGTCCCGATCTTGGTGACATGGAGATGTGA
Upstream 100 bases:
>100_bases GGGCACCCCGACCACGCGCTGCGCGGTCGGGCGCACCAGGCTTACGTGCGCAAATGCAAGGAACTCGGTCTTTCCACAGC CGCTGGCGAGGGAGGCTCCG
Downstream 100 bases:
>100_bases GCATGGCGCTGACTGCCTCGGGATGGCGGAGCGATCGATGCTGTCGGTAGCCAATGTCCGCACCGCCGGCGGGGCGGCCA ACTACTTCGCTGCCGACAAT
Product: Type IV secretory pathway VirD4 components-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 798; Mature: 798
Protein sequence:
>798_residues MKRNLVNFTRGSQLLGHFSFMFAAGLKGPLIVAALVISWTSWWTISAGLTDHEVYLVWMRIYAAIYGFMEFDAAKRITLE TAFGATIQFPIAQLESYPPVVHAWEKLTALLTSALWRSGFLLVPVFAVFYWFAERFGGRSKERKHERGAMLVTLPELVDE LTAHNRRERTRELDSALGWKWRLSLPREIARVFPYRPSHIATVSYPWRLEQSHAMLIGTTGMGKTVAISDMIAEARAKGQ RCVVFDLTGAFIEHFHAAHCDIILNPLDARCPQWSLFDECRSEGEFWAAADALVPHDGGGEAQFWVIAARALFVEFCLKL VAEGRATNDALARELMTADLSRVHAMMRGTIADPLTAPEAARMAESIRAVFNVNAKALKLLPTAGPRFSVRQWIEDGADS ATSEGSILFISARYVDMSVCAQLLTLWLDTAMNTLMTMPRTRDLKCWFFVDELGALHRLPALEKGLQTARNFGGAIVLGL HAYAKLKEVYGENMAMTLASLARTKLILGTADRETATWCSDFIGHRQVRDMEEGYTYGYNNARDAVSLTPRKHIEPLLLP DQLMNLPRLSGYIKFPDGFPAAPIKLKPVDRPKRAETFIARVKESPKARVTVPHPAAEQAEQKAAPTGSEHPSSNDDGAG KPVVPKQGELALDQGPKAAPRQEPDAPAKDIGRAVEHPPGKTSKEREPAARSGQDKAGKARKEQSNTRTDARARKAGPSA RPLLPTGEAAAAPDQSASPKGTPQASTPGTEGLQQGKPDNPKSQSSRDAAARKLMIEDGLREHEPPPITGPDLGDMEM
Sequences:
>Translated_798_residues MKRNLVNFTRGSQLLGHFSFMFAAGLKGPLIVAALVISWTSWWTISAGLTDHEVYLVWMRIYAAIYGFMEFDAAKRITLE TAFGATIQFPIAQLESYPPVVHAWEKLTALLTSALWRSGFLLVPVFAVFYWFAERFGGRSKERKHERGAMLVTLPELVDE LTAHNRRERTRELDSALGWKWRLSLPREIARVFPYRPSHIATVSYPWRLEQSHAMLIGTTGMGKTVAISDMIAEARAKGQ RCVVFDLTGAFIEHFHAAHCDIILNPLDARCPQWSLFDECRSEGEFWAAADALVPHDGGGEAQFWVIAARALFVEFCLKL VAEGRATNDALARELMTADLSRVHAMMRGTIADPLTAPEAARMAESIRAVFNVNAKALKLLPTAGPRFSVRQWIEDGADS ATSEGSILFISARYVDMSVCAQLLTLWLDTAMNTLMTMPRTRDLKCWFFVDELGALHRLPALEKGLQTARNFGGAIVLGL HAYAKLKEVYGENMAMTLASLARTKLILGTADRETATWCSDFIGHRQVRDMEEGYTYGYNNARDAVSLTPRKHIEPLLLP DQLMNLPRLSGYIKFPDGFPAAPIKLKPVDRPKRAETFIARVKESPKARVTVPHPAAEQAEQKAAPTGSEHPSSNDDGAG KPVVPKQGELALDQGPKAAPRQEPDAPAKDIGRAVEHPPGKTSKEREPAARSGQDKAGKARKEQSNTRTDARARKAGPSA RPLLPTGEAAAAPDQSASPKGTPQASTPGTEGLQQGKPDNPKSQSSRDAAARKLMIEDGLREHEPPPITGPDLGDMEM >Mature_798_residues MKRNLVNFTRGSQLLGHFSFMFAAGLKGPLIVAALVISWTSWWTISAGLTDHEVYLVWMRIYAAIYGFMEFDAAKRITLE TAFGATIQFPIAQLESYPPVVHAWEKLTALLTSALWRSGFLLVPVFAVFYWFAERFGGRSKERKHERGAMLVTLPELVDE LTAHNRRERTRELDSALGWKWRLSLPREIARVFPYRPSHIATVSYPWRLEQSHAMLIGTTGMGKTVAISDMIAEARAKGQ RCVVFDLTGAFIEHFHAAHCDIILNPLDARCPQWSLFDECRSEGEFWAAADALVPHDGGGEAQFWVIAARALFVEFCLKL VAEGRATNDALARELMTADLSRVHAMMRGTIADPLTAPEAARMAESIRAVFNVNAKALKLLPTAGPRFSVRQWIEDGADS ATSEGSILFISARYVDMSVCAQLLTLWLDTAMNTLMTMPRTRDLKCWFFVDELGALHRLPALEKGLQTARNFGGAIVLGL HAYAKLKEVYGENMAMTLASLARTKLILGTADRETATWCSDFIGHRQVRDMEEGYTYGYNNARDAVSLTPRKHIEPLLLP DQLMNLPRLSGYIKFPDGFPAAPIKLKPVDRPKRAETFIARVKESPKARVTVPHPAAEQAEQKAAPTGSEHPSSNDDGAG KPVVPKQGELALDQGPKAAPRQEPDAPAKDIGRAVEHPPGKTSKEREPAARSGQDKAGKARKEQSNTRTDARARKAGPSA RPLLPTGEAAAAPDQSASPKGTPQASTPGTEGLQQGKPDNPKSQSSRDAAARKLMIEDGLREHEPPPITGPDLGDMEM
Specific function: TraD is a cell envelope protein. The function of traD is unknown but it is essential for DNA transfer. It may form or may be part of a non-specific pore for DNA export, or it may directly energizes DNA transport [H]
COG id: COG3505
COG function: function code U; Type IV secretory pathway, VirD4 components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To traD of plasmid F [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014128 - InterPro: IPR019476 - InterPro: IPR022585 [H]
Pfam domain/function: PF12615 TraD_N; PF10412 TrwB_AAD_bind [H]
EC number: NA
Molecular weight: Translated: 87850; Mature: 87850
Theoretical pI: Translated: 8.67; Mature: 8.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRNLVNFTRGSQLLGHFSFMFAAGLKGPLIVAALVISWTSWWTISAGLTDHEVYLVWMR CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHH IYAAIYGFMEFDAAKRITLETAFGATIQFPIAQLESYPPVVHAWEKLTALLTSALWRSGF HHHHHHHHHHHCCCCEEEEEECCCCEEECCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC LLVPVFAVFYWFAERFGGRSKERKHERGAMLVTLPELVDELTAHNRRERTRELDSALGWK HHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCE WRLSLPREIARVFPYRPSHIATVSYPWRLEQSHAMLIGTTGMGKTVAISDMIAEARAKGQ EEECCHHHHHHHCCCCCCCEEEEECCEEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCC RCVVFDLTGAFIEHFHAAHCDIILNPLDARCPQWSLFDECRSEGEFWAAADALVPHDGGG EEEEEECHHHHHHHHHHHCCEEEECCHHCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCC EAQFWVIAARALFVEFCLKLVAEGRATNDALARELMTADLSRVHAMMRGTIADPLTAPEA CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH ARMAESIRAVFNVNAKALKLLPTAGPRFSVRQWIEDGADSATSEGSILFISARYVDMSVC HHHHHHHHHHHCCCHHHEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHH AQLLTLWLDTAMNTLMTMPRTRDLKCWFFVDELGALHRLPALEKGLQTARNFGGAIVLGL HHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHCHHHHHHHHHHHHCCCEEEEHH HAYAKLKEVYGENMAMTLASLARTKLILGTADRETATWCSDFIGHRQVRDMEEGYTYGYN HHHHHHHHHHCCHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC NARDAVSLTPRKHIEPLLLPDQLMNLPRLSGYIKFPDGFPAAPIKLKPVDRPKRAETFIA CCCCCEECCCHHHCCCCCCCHHHHCCHHHCCEEECCCCCCCCCEEECCCCCCHHHHHHHH RVKESPKARVTVPHPAAEQAEQKAAPTGSEHPSSNDDGAGKPVVPKQGELALDQGPKAAP HHHCCCCCEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC RQEPDAPAKDIGRAVEHPPGKTSKEREPAARSGQDKAGKARKEQSNTRTDARARKAGPSA CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCC RPLLPTGEAAAAPDQSASPKGTPQASTPGTEGLQQGKPDNPKSQSSRDAAARKLMIEDGL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCH REHEPPPITGPDLGDMEM HHCCCCCCCCCCCCCCCC >Mature Secondary Structure MKRNLVNFTRGSQLLGHFSFMFAAGLKGPLIVAALVISWTSWWTISAGLTDHEVYLVWMR CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHH IYAAIYGFMEFDAAKRITLETAFGATIQFPIAQLESYPPVVHAWEKLTALLTSALWRSGF HHHHHHHHHHHCCCCEEEEEECCCCEEECCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC LLVPVFAVFYWFAERFGGRSKERKHERGAMLVTLPELVDELTAHNRRERTRELDSALGWK HHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCE WRLSLPREIARVFPYRPSHIATVSYPWRLEQSHAMLIGTTGMGKTVAISDMIAEARAKGQ EEECCHHHHHHHCCCCCCCEEEEECCEEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCC RCVVFDLTGAFIEHFHAAHCDIILNPLDARCPQWSLFDECRSEGEFWAAADALVPHDGGG EEEEEECHHHHHHHHHHHCCEEEECCHHCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCC EAQFWVIAARALFVEFCLKLVAEGRATNDALARELMTADLSRVHAMMRGTIADPLTAPEA CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH ARMAESIRAVFNVNAKALKLLPTAGPRFSVRQWIEDGADSATSEGSILFISARYVDMSVC HHHHHHHHHHHCCCHHHEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHH AQLLTLWLDTAMNTLMTMPRTRDLKCWFFVDELGALHRLPALEKGLQTARNFGGAIVLGL HHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHCHHHHHHHHHHHHCCCEEEEHH HAYAKLKEVYGENMAMTLASLARTKLILGTADRETATWCSDFIGHRQVRDMEEGYTYGYN HHHHHHHHHHCCHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC NARDAVSLTPRKHIEPLLLPDQLMNLPRLSGYIKFPDGFPAAPIKLKPVDRPKRAETFIA CCCCCEECCCHHHCCCCCCCHHHHCCHHHCCEEECCCCCCCCCEEECCCCCCHHHHHHHH RVKESPKARVTVPHPAAEQAEQKAAPTGSEHPSSNDDGAGKPVVPKQGELALDQGPKAAP HHHCCCCCEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC RQEPDAPAKDIGRAVEHPPGKTSKEREPAARSGQDKAGKARKEQSNTRTDARARKAGPSA CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCC RPLLPTGEAAAAPDQSASPKGTPQASTPGTEGLQQGKPDNPKSQSSRDAAARKLMIEDGL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCH REHEPPPITGPDLGDMEM HHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2164585 [H]