| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is yqhH [H]
Identifier: 87200188
GI number: 87200188
Start: 2310734
End: 2313502
Strand: Reverse
Name: yqhH [H]
Synonym: Saro_2172
Alternate gene names: 87200188
Gene position: 2313502-2310734 (Counterclockwise)
Preceding gene: 87200189
Following gene: 87200187
Centisome position: 64.96
GC content: 60.35
Gene sequence:
>2769_bases GTGCCTGACCTGATCTCCCGCTTTTCCTCGCGCAATCACCGCCTCTCCCATGTCTTCTTGAAGGACCGGCTGAAAGGGGC AGAGACCTATGACCGGATCGCCGGGTATTTCCGCTCCTCCATTTTCGACCTGATCCACGAGGAGATCAGCACAATCGGTC GGGTCCGGATCGTCTGCAACGCGGACCTAGACCCGCGTGACCTGACGGCGGCCACGCTCAGTCAAAAGGCTCGCGACCAG GCGCAGGTCGAGCGGTGGCACGAGCAAGGGGACGAGGTCGACGCACTCTTGGAGCGGCCCCGCTGGCGGCGCTTGCACGA GCTGTTGACCGCCGGGAATGTAGAGATCCGGGTCGTCTCACGCGATAACGCGCCCTTCCTGCATGGAAAGGCGGGGGTAA TAACCCGCCCCGACGGGACTACCTCTAGCTTCATTGGGTCCATCAATGAGACCGCAAATGGGTGGGTGCAATCCTACGAA ATGATCTGGGAGGACCAGTCCCCAGAGGCGGCCACTTGGGTCCGGTCCGAATTCGACTGGCTCTGGAAAAAGGGGGTGCC CCTTTCACAGGCTGTGATCGACGAGATTGGTCGGACAGCCAACAAGATAGAAGTTCAGGTGGAGGAGATGCAGTCCGACC CGGTCGGACTGGCTAAATCCGTCACCGTCGAGAGCCCCCTCGTGCGCCGTGGAGAGGGACTCGCCCCATGGCAGAAGGCT TTCGTGAAGATCTTCGTAGAGCATGACCAGAAATACGGGGCAGCTCGTCTCCTGCTCGCCGATGAAGTAGGGGTCGGAAA AACCCTATCAATGGCCGCAACTGGCGCGCTCTCGGTCCTGATGGGGCACGGGGCCTTCCTCATCCTCTGCCCGGCCACCC TGACCCTCCAATGGCAGATGGAGCTCTGGGACAAGCTGGGTCTCCCTTCCTGTGTCTGGGCGCGCGCGCCTCAGAAGGGT TGGTTGGACCATCGTGGCCACCTCTACCGGTCACGGGATCCAGATGACGTGCTGCGCTGCCCAGCGCAAATCGGGATTGT CTCAACCGGCCTCCTTGTACGCGGCGGCCCGGAGGCACAGGCACTGTTGCGCGGGACCTACGGAATGATAGCGCTCGACG AGGGGCACAAGGCTCGGGTCAAACGTGGGATCGGGATGGATGAGCCGGAGCCAGGTAAGCTCTACCAGGCCATGGAGCGC CTTGCCGGGCGAACACGCCACCTAGTAATCGGGACTGCAACCCCGATCCAGACGCACCGGGAGGAGATCTGGGACCTTAT GAAGCTACTCGCCTACGGGCAGGATCATGTCCTTGGGCGGCCGAGCGCGTCTCGGTGGTGGGACTCAGAGCAGGCACTCG ACCTAGTTTCTGGTCGGACGGCCCCGCCGGAACCAGAAGCGGCCTGGCCTTGGCTCCGCTCACCACTCCCGCATGCCCGC GAGGCAGCCGTGTTCCGGGCGATACGAGAGGACCTGAAGGTCCGGGAAGACGAGTTTTTCACTGACCGCGGCCTCGCGGA TCTGGACGATTTCACCCGCGAGGACCTGGCGGAGGTGCTCGAAATGGGAGAGATCGCCCGTAAACTGCCGTTCATGCGGT ACCACAACCCGCTTGGCCGCCATGTAGTCCTGCGCCGCCGTAAGACGCTTGAGGAAGCAGGACTGATGGACCGGATCGCG GTCAACATCCACCCGCGCCCTAGCACCTCCCCGGCGGTGTTCGAGCGTGGTGCGGTCCGCACACCGCATTTCTATGACCG AGCTTACGAGGAGGTCCAACTCTTCACAAAGGCAATGAAGGCGCGTCAGGCTGGAACTGGGTTTCTCGGAAATCTGATGA TGCAGCGCATATGCTCCTCCATCGCGTCCGGAATAGCGACCGCTACCAAGATGCTGGAGCGCCGCCGCGAGGGAATTCTA GCCGAAGAGGCTGAAGATCCTGACCTGCTGGAAGCGATCGAAGAATTGGGAGCGGAGGCTTATGCTGCCGCTGTGGATGT CGAGGCGATCCATCTCGAACGGGTTTTGGAGATTCTGTCTTCGGCTAAGCAGGAAGATCCAAAGGGACGTGCTGTCCTGC ACTATCTTGACCAAGAGGGGTGGCTTGCGCTCGGCTGCATCATCTTTTCCCAGTATTATGACACTGCTCGCTGGGTAGGT GAGTTAATCAGCGAGACGCACCCCACAGAGCCGGTCGCGGTATATGCCGGGGTTGGAAAGTCAGGTGTCTTGCTTGGCGG GGAGTGGCGGTCGATCGACCGCGAGGACATCAAACGGGGGGTCAAGGAGCGGAAGCTTCGGGTCGTCTGTGCGACTGACG CCGCCTGTGAGGGTTTGAACCTCCAGACTTTGGGCACCCTAATCAATGTCGATTTGCCGTGGAATCCGTCTCGTCTGGAA CAGCGGATCGGTCGAATCAAACGGTACGGCCAGCAGCGTCGCGAGGTGGATATGGCGAACCTGGTGTATTCAGGCACTAT CGATGAACGGGTTTACCAACGTCTCTCGGAGCGCATGCAGGACCGCTACGACATACTTGGCTCGCTGCCCGATACCATCG AAGACGATTGGATCGAGAATATTGAGCGACTTGAGGCGGAGCTCAAATCTTTCACCAAGCCGGAAAGTCCGGCTGATGTT TTCAGCTTGAGGTATGGAGATTTTCTCGAAGTTGGCGATGGCGACGCTGACTGGGAGCTTTGGACTAAAGTAGTTTCACG CAGAGATATCGAGACTTTGCTTGAGCGTCCCTGGGGCTCTGGCAGGTGA
Upstream 100 bases:
>100_bases GCCACGAAGCGGGAGCGGAATGACCCGGCAGAAGCGAGCGCAGCTCGGATCCTCGGGACCGCGATCCAAACGGAGCGGAT CTAATGAGGAGACGCGCGTC
Downstream 100 bases:
>100_bases ACGGCCATGCGATACCGACCTCAAGGGGAACCGCCTTTGCACGCCGGTTACCGCGGAAACATGGGAATATGCCTTTAGCC CAGCAGAGAGTGCATTCTAC
Product: helicase-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 922; Mature: 921
Protein sequence:
>922_residues MPDLISRFSSRNHRLSHVFLKDRLKGAETYDRIAGYFRSSIFDLIHEEISTIGRVRIVCNADLDPRDLTAATLSQKARDQ AQVERWHEQGDEVDALLERPRWRRLHELLTAGNVEIRVVSRDNAPFLHGKAGVITRPDGTTSSFIGSINETANGWVQSYE MIWEDQSPEAATWVRSEFDWLWKKGVPLSQAVIDEIGRTANKIEVQVEEMQSDPVGLAKSVTVESPLVRRGEGLAPWQKA FVKIFVEHDQKYGAARLLLADEVGVGKTLSMAATGALSVLMGHGAFLILCPATLTLQWQMELWDKLGLPSCVWARAPQKG WLDHRGHLYRSRDPDDVLRCPAQIGIVSTGLLVRGGPEAQALLRGTYGMIALDEGHKARVKRGIGMDEPEPGKLYQAMER LAGRTRHLVIGTATPIQTHREEIWDLMKLLAYGQDHVLGRPSASRWWDSEQALDLVSGRTAPPEPEAAWPWLRSPLPHAR EAAVFRAIREDLKVREDEFFTDRGLADLDDFTREDLAEVLEMGEIARKLPFMRYHNPLGRHVVLRRRKTLEEAGLMDRIA VNIHPRPSTSPAVFERGAVRTPHFYDRAYEEVQLFTKAMKARQAGTGFLGNLMMQRICSSIASGIATATKMLERRREGIL AEEAEDPDLLEAIEELGAEAYAAAVDVEAIHLERVLEILSSAKQEDPKGRAVLHYLDQEGWLALGCIIFSQYYDTARWVG ELISETHPTEPVAVYAGVGKSGVLLGGEWRSIDREDIKRGVKERKLRVVCATDAACEGLNLQTLGTLINVDLPWNPSRLE QRIGRIKRYGQQRREVDMANLVYSGTIDERVYQRLSERMQDRYDILGSLPDTIEDDWIENIERLEAELKSFTKPESPADV FSLRYGDFLEVGDGDADWELWTKVVSRRDIETLLERPWGSGR
Sequences:
>Translated_922_residues MPDLISRFSSRNHRLSHVFLKDRLKGAETYDRIAGYFRSSIFDLIHEEISTIGRVRIVCNADLDPRDLTAATLSQKARDQ AQVERWHEQGDEVDALLERPRWRRLHELLTAGNVEIRVVSRDNAPFLHGKAGVITRPDGTTSSFIGSINETANGWVQSYE MIWEDQSPEAATWVRSEFDWLWKKGVPLSQAVIDEIGRTANKIEVQVEEMQSDPVGLAKSVTVESPLVRRGEGLAPWQKA FVKIFVEHDQKYGAARLLLADEVGVGKTLSMAATGALSVLMGHGAFLILCPATLTLQWQMELWDKLGLPSCVWARAPQKG WLDHRGHLYRSRDPDDVLRCPAQIGIVSTGLLVRGGPEAQALLRGTYGMIALDEGHKARVKRGIGMDEPEPGKLYQAMER LAGRTRHLVIGTATPIQTHREEIWDLMKLLAYGQDHVLGRPSASRWWDSEQALDLVSGRTAPPEPEAAWPWLRSPLPHAR EAAVFRAIREDLKVREDEFFTDRGLADLDDFTREDLAEVLEMGEIARKLPFMRYHNPLGRHVVLRRRKTLEEAGLMDRIA VNIHPRPSTSPAVFERGAVRTPHFYDRAYEEVQLFTKAMKARQAGTGFLGNLMMQRICSSIASGIATATKMLERRREGIL AEEAEDPDLLEAIEELGAEAYAAAVDVEAIHLERVLEILSSAKQEDPKGRAVLHYLDQEGWLALGCIIFSQYYDTARWVG ELISETHPTEPVAVYAGVGKSGVLLGGEWRSIDREDIKRGVKERKLRVVCATDAACEGLNLQTLGTLINVDLPWNPSRLE QRIGRIKRYGQQRREVDMANLVYSGTIDERVYQRLSERMQDRYDILGSLPDTIEDDWIENIERLEAELKSFTKPESPADV FSLRYGDFLEVGDGDADWELWTKVVSRRDIETLLERPWGSGR >Mature_921_residues PDLISRFSSRNHRLSHVFLKDRLKGAETYDRIAGYFRSSIFDLIHEEISTIGRVRIVCNADLDPRDLTAATLSQKARDQA QVERWHEQGDEVDALLERPRWRRLHELLTAGNVEIRVVSRDNAPFLHGKAGVITRPDGTTSSFIGSINETANGWVQSYEM IWEDQSPEAATWVRSEFDWLWKKGVPLSQAVIDEIGRTANKIEVQVEEMQSDPVGLAKSVTVESPLVRRGEGLAPWQKAF VKIFVEHDQKYGAARLLLADEVGVGKTLSMAATGALSVLMGHGAFLILCPATLTLQWQMELWDKLGLPSCVWARAPQKGW LDHRGHLYRSRDPDDVLRCPAQIGIVSTGLLVRGGPEAQALLRGTYGMIALDEGHKARVKRGIGMDEPEPGKLYQAMERL AGRTRHLVIGTATPIQTHREEIWDLMKLLAYGQDHVLGRPSASRWWDSEQALDLVSGRTAPPEPEAAWPWLRSPLPHARE AAVFRAIREDLKVREDEFFTDRGLADLDDFTREDLAEVLEMGEIARKLPFMRYHNPLGRHVVLRRRKTLEEAGLMDRIAV NIHPRPSTSPAVFERGAVRTPHFYDRAYEEVQLFTKAMKARQAGTGFLGNLMMQRICSSIASGIATATKMLERRREGILA EEAEDPDLLEAIEELGAEAYAAAVDVEAIHLERVLEILSSAKQEDPKGRAVLHYLDQEGWLALGCIIFSQYYDTARWVGE LISETHPTEPVAVYAGVGKSGVLLGGEWRSIDREDIKRGVKERKLRVVCATDAACEGLNLQTLGTLINVDLPWNPSRLEQ RIGRIKRYGQQRREVDMANLVYSGTIDERVYQRLSERMQDRYDILGSLPDTIEDDWIENIERLEAELKSFTKPESPADVF SLRYGDFLEVGDGDADWELWTKVVSRRDIETLLERPWGSGR
Specific function: Transcription Regulator That Activates Transcription By Stimulating RNA Polymerase (Rnap) Recycling In Case Of Stress Conditions Such As Supercoiled DNA Or High Salt Concentrations. Probably Acts By Releasing The Rnap, When It Is Trapped Or Immobilized On
COG id: COG0553
COG function: function code KL; Superfamily II DNA/RNA helicases, SNF2 family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR000330 [H]
Pfam domain/function: PF00271 Helicase_C; PF00176 SNF2_N [H]
EC number: 3.6.1.- [C]
Molecular weight: Translated: 104114; Mature: 103982
Theoretical pI: Translated: 5.69; Mature: 5.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDLISRFSSRNHRLSHVFLKDRLKGAETYDRIAGYFRSSIFDLIHEEISTIGRVRIVCN CCHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE ADLDPRDLTAATLSQKARDQAQVERWHEQGDEVDALLERPRWRRLHELLTAGNVEIRVVS CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHCCCEEEEEEE RDNAPFLHGKAGVITRPDGTTSSFIGSINETANGWVQSYEMIWEDQSPEAATWVRSEFDW CCCCCEEECCCCEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH LWKKGVPLSQAVIDEIGRTANKIEVQVEEMQSDPVGLAKSVTVESPLVRRGEGLAPWQKA HHHCCCCHHHHHHHHHCCCHHHHEEEHHHHCCCCCCCHHHCCCCCCHHHCCCCCCHHHHH FVKIFVEHDQKYGAARLLLADEVGVGKTLSMAATGALSVLMGHGAFLILCPATLTLQWQM HHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEHH ELWDKLGLPSCVWARAPQKGWLDHRGHLYRSRDPDDVLRCPAQIGIVSTGLLVRGGPEAQ HHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHCHHCCCCEEECCCHHH ALLRGTYGMIALDEGHKARVKRGIGMDEPEPGKLYQAMERLAGRTRHLVIGTATPIQTHR HHHHCCCCEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHH EEIWDLMKLLAYGQDHVLGRPSASRWWDSEQALDLVSGRTAPPEPEAAWPWLRSPLPHAR HHHHHHHHHHHCCCCCCCCCCCCHHCCCCHHHHHHHCCCCCCCCCCCCCCHHCCCCCCHH EAAVFRAIREDLKVREDEFFTDRGLADLDDFTREDLAEVLEMGEIARKLPFMRYHNPLGR HHHHHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHH HVVLRRRKTLEEAGLMDRIAVNIHPRPSTSPAVFERGAVRTPHFYDRAYEEVQLFTKAMK HHHHHHHHHHHHCCCHHEEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH ARQAGTGFLGNLMMQRICSSIASGIATATKMLERRREGILAEEAEDPDLLEAIEELGAEA HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCHHH YAAAVDVEAIHLERVLEILSSAKQEDPKGRAVLHYLDQEGWLALGCIIFSQYYDTARWVG HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH ELISETHPTEPVAVYAGVGKSGVLLGGEWRSIDREDIKRGVKERKLRVVCATDAACEGLN HHHHCCCCCCCEEEEECCCCCCEEECCCCCCCCHHHHHCCHHHCCEEEEEECCHHCCCCC LQTLGTLINVDLPWNPSRLEQRIGRIKRYGQQRREVDMANLVYSGTIDERVYQRLSERMQ HHEEHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH DRYDILGSLPDTIEDDWIENIERLEAELKSFTKPESPADVFSLRYGDFLEVGDGDADWEL HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCEEECCCCCCCHHH WTKVVSRRDIETLLERPWGSGR HHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure PDLISRFSSRNHRLSHVFLKDRLKGAETYDRIAGYFRSSIFDLIHEEISTIGRVRIVCN CHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE ADLDPRDLTAATLSQKARDQAQVERWHEQGDEVDALLERPRWRRLHELLTAGNVEIRVVS CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHCCCEEEEEEE RDNAPFLHGKAGVITRPDGTTSSFIGSINETANGWVQSYEMIWEDQSPEAATWVRSEFDW CCCCCEEECCCCEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH LWKKGVPLSQAVIDEIGRTANKIEVQVEEMQSDPVGLAKSVTVESPLVRRGEGLAPWQKA HHHCCCCHHHHHHHHHCCCHHHHEEEHHHHCCCCCCCHHHCCCCCCHHHCCCCCCHHHHH FVKIFVEHDQKYGAARLLLADEVGVGKTLSMAATGALSVLMGHGAFLILCPATLTLQWQM HHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEHH ELWDKLGLPSCVWARAPQKGWLDHRGHLYRSRDPDDVLRCPAQIGIVSTGLLVRGGPEAQ HHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHCHHCCCCEEECCCHHH ALLRGTYGMIALDEGHKARVKRGIGMDEPEPGKLYQAMERLAGRTRHLVIGTATPIQTHR HHHHCCCCEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHH EEIWDLMKLLAYGQDHVLGRPSASRWWDSEQALDLVSGRTAPPEPEAAWPWLRSPLPHAR HHHHHHHHHHHCCCCCCCCCCCCHHCCCCHHHHHHHCCCCCCCCCCCCCCHHCCCCCCHH EAAVFRAIREDLKVREDEFFTDRGLADLDDFTREDLAEVLEMGEIARKLPFMRYHNPLGR HHHHHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHH HVVLRRRKTLEEAGLMDRIAVNIHPRPSTSPAVFERGAVRTPHFYDRAYEEVQLFTKAMK HHHHHHHHHHHHCCCHHEEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH ARQAGTGFLGNLMMQRICSSIASGIATATKMLERRREGILAEEAEDPDLLEAIEELGAEA HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCHHH YAAAVDVEAIHLERVLEILSSAKQEDPKGRAVLHYLDQEGWLALGCIIFSQYYDTARWVG HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH ELISETHPTEPVAVYAGVGKSGVLLGGEWRSIDREDIKRGVKERKLRVVCATDAACEGLN HHHHCCCCCCCEEEEECCCCCCEEECCCCCCCCHHHHHCCHHHCCEEEEEECCHHCCCCC LQTLGTLINVDLPWNPSRLEQRIGRIKRYGQQRREVDMANLVYSGTIDERVYQRLSERMQ HHEEHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH DRYDILGSLPDTIEDDWIENIERLEAELKSFTKPESPADVFSLRYGDFLEVGDGDADWEL HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCEEECCCCCCCHHH WTKVVSRRDIETLLERPWGSGR HHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]