| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is traG [H]
Identifier: 87200185
GI number: 87200185
Start: 2307355
End: 2310057
Strand: Direct
Name: traG [H]
Synonym: Saro_2169
Alternate gene names: 87200185
Gene position: 2307355-2310057 (Clockwise)
Preceding gene: 87200184
Following gene: 87200194
Centisome position: 64.78
GC content: 62.3
Gene sequence:
>2703_bases ATGGTCGAGATTTTCACGGTCGGCGGCGGGGACTATCTGGTCAACGTCTTCCAGGCGGTCGCCGCCTGGACCGGCAACGG GGGCTACAAGAGCCTGCTCCAGGTGGTGATGGTAATGGGGCTTGGCCTGTCTGCCCTGACCCTTGCGTTCAACCAGGACT GGCGCGCCTGGATCAACTGGTTCCTCGGCGCAACGCTCATCTACTCCTGCCTAATGGTGCCGCGGCTCGAGGTCCATGTG ACCGACCGGCTCAATCCGAGCCTTGCCCCGGCCAATGTCAGCAACGTGCCGCTGGGCCTGGCCTTGATGGCGAGCTTTAC CAGCCAGGTCGGCGACTATCTGACGGGCTCGGCAGAAGTGGTGTTCGGCCTGCCCGGAGATCTCAACTATTCGAAAAACG GGATGATCTACGGCGCGCGGCTCTACGATGCGACCCGGTCCTTGCGGATTTCCGATCCGGAGTTTGCTGCCAATCTCGAC GAGCATTTCCGGCAATGCGTGTTCTACGACGTCCTGCTCGGCCGCTACTCGATGAAGGAGCTGGCAGAAACCGGCGACAT CTGGGCGACGATCGCGCCGGGAAGCCAGGCGCGCGCACAGCGCTTCCTGACCCGGGATGCCACTTCAGGCCAGGTGAGCT CGAACATCGTGACCTGCCGCGAGGCCTACGACACGCTCAATGCGCAGTGGGCCGGCCTCGTCGATGCGATGGGATCGGTG TTCGGCCGTCAGCTTTACCCCAACCAGACGACCGCGCTCGCCAAGGCGAAGCTCTTTGCCGACCTGCCAGTGGCCTATCA GTACCTAACCGGCGTCTCGGCCAACGCGACCGAAATCTTCAAGCAGACGCTGACTATCAATGCGATGAGCCAGGCGATGC ATTCGATGTCCGGCACCAGCGGCGCGGGCAATGTCGACGTCTACGCCCAGACCCGCGCCGACATTCAGACCGAGCGGACC TATGGCTCGATTGCGAGCAACGCCATGAAGTGGGTCCCACTCCTGAACGTCGTGCTGACCGTGCTGTTCTATGCGCTGTT TCCGGTGCTCTTCCCGCTCTTCCTGCTCCCCAAGACGGGACCTGTCGCACTCAAGGGCTATGTGACGGGCTTCTTCTATC TCGCGGCCTGGGGGCCGCTGTTCGTGATCCTCCACATGATGCTGATGTACAAGGGCGCGGCCGACATGAGCGCGGTCACA GGCAGCAACGGCCTCAGCCTGGCGAGCTTTACCGGAATGGCCGACGTCAACAGCGATATCGGTCTGCTGGCCGGCTATCT CATCGCATCGGTGCCGTTCCTGGCAGGCGGTGTGGCCAAGGGCGCCATGGCGATTTCCCACCACGCCACGAGCTACCTCA ATCCGAGCCAGAACGCGGCCGAGGAAGCGGCCCGGGAGGCGAGTACCGGCAACGTCTCGCTCGGCAACACCAGCTTCGAA AACTCGAGCGTCCTCACCCGCCAATTCGCACAAGGCACGATCGCGCCAAGCTTCACGTACGGCGCGCCGCAGACGCGGAC CTTCAGCGACACCGGGGCAATGACCACGAGCTTTCCGGACGGCAGCTACGACCAGATCCCGACCTCCAGCTATCCCTTCA CGCCGACGCTGGGCCAGGAATTCACGGCGCGCCTTTCGACGATGGCATCGCAGGCCCGCGCCAACAGCGAGAGTTATACC AATTTCGCAACGGAATCGACGACCAGCGCGGTCACGAAGTTCCGCGAGCTCAGGGACCAGTTCAGCCGGGGCGCATCCTT CGAGAGCGCGACCGGTACCTCGAATTCCGACAGCATCCAGACCGCATTCAGCGAGGTCGATCAGGCATCGACCAGTCTGC AGCGGCAATTCGGGCTGTCGCGCAGGGTCGCAGATGACATCTCTACCGCTTGGTTCCTGGGTGGCGAGGCCGGGGCAAAA GCTGGGATTTCTAATGGCGTGCTCTCGGGAAGCGTAGGAGCGAAGGGCGGTGGGACACGCACATGGACCGACAGCGACAT CGGTATCGCATCCGAAGACCGCTCACGCATCTTTGGGAGCCTGTCCCAGATGTCTGACAGCCGCAATTGGTCGAGCACCC GCGATGGGTTCGTTCGCTCAGTCAGCACTTCATCAAGCTCGTCGATCTCGAGCACCGCGAGCGGCATGAACGCATCTCTG ACAGAAGCCCAGAGCTTCACAATCGAAGCTCGTCGGGCCGAGGAGCTTGCCAATCGTCTCGAGAGCCAGGCTTCTTTCTA CGAAGGAAACAGCGCTGCAGGCAGCCTCAATTTGTCCCAAGCCTACCGCGAATGGGGTCTCGCCGAGATCGAAAGCAACC GCGATTTCTATGGCAATGCGCGGTTCGACGATGTCACGTTCCAGCTCAGCCCGGAAGGCCAAGCATTGCAGGCAAAGTTC ATTGAAAGTTATGCCGAGCAGCTTCGCGACGGAATCGACGATCGCCTCGTACTCGTCCCCGGACAGCCCGTATCCCGACC GGCTATCTCAAGCGCGGGCTCAGTGCGCGGCCGGGCACAGACCGGCGGCGGGGGTTCCGATTCAGTGCCCCGCGTGGGTG CCGGCAATCTTCATGAAGAGGTGCAAAAGGCTCAGGCGGCCGGTCGCCAGAAGATTACCGGCTCTAGGGGACGTCTAGAC GCGATCACCAAGGGAGCCCAAGGTGCCAGTGCAGAAGCAGCCGATGATGTGAAGGAGTGGTGA
Upstream 100 bases:
>100_bases GTCGCCCGGAATGGCCGCATCGCTGGACTGGTCGCGCGGCGTCCAGAGCCGCGCCCTTACCCACTGACCGGGCCAACCAC ATCAAGGCGGGACAACAGAC
Downstream 100 bases:
>100_bases CCTGCAACGGTCACCACAGTCCGAATGACGCGCCCGCTAAGAATGCGAAAACGGCAACAATGACGAAGCCGCCGATGATC GTCAGCTTACGCCCCCAAGG
Product: TraG-like
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 900; Mature: 900
Protein sequence:
>900_residues MVEIFTVGGGDYLVNVFQAVAAWTGNGGYKSLLQVVMVMGLGLSALTLAFNQDWRAWINWFLGATLIYSCLMVPRLEVHV TDRLNPSLAPANVSNVPLGLALMASFTSQVGDYLTGSAEVVFGLPGDLNYSKNGMIYGARLYDATRSLRISDPEFAANLD EHFRQCVFYDVLLGRYSMKELAETGDIWATIAPGSQARAQRFLTRDATSGQVSSNIVTCREAYDTLNAQWAGLVDAMGSV FGRQLYPNQTTALAKAKLFADLPVAYQYLTGVSANATEIFKQTLTINAMSQAMHSMSGTSGAGNVDVYAQTRADIQTERT YGSIASNAMKWVPLLNVVLTVLFYALFPVLFPLFLLPKTGPVALKGYVTGFFYLAAWGPLFVILHMMLMYKGAADMSAVT GSNGLSLASFTGMADVNSDIGLLAGYLIASVPFLAGGVAKGAMAISHHATSYLNPSQNAAEEAAREASTGNVSLGNTSFE NSSVLTRQFAQGTIAPSFTYGAPQTRTFSDTGAMTTSFPDGSYDQIPTSSYPFTPTLGQEFTARLSTMASQARANSESYT NFATESTTSAVTKFRELRDQFSRGASFESATGTSNSDSIQTAFSEVDQASTSLQRQFGLSRRVADDISTAWFLGGEAGAK AGISNGVLSGSVGAKGGGTRTWTDSDIGIASEDRSRIFGSLSQMSDSRNWSSTRDGFVRSVSTSSSSSISSTASGMNASL TEAQSFTIEARRAEELANRLESQASFYEGNSAAGSLNLSQAYREWGLAEIESNRDFYGNARFDDVTFQLSPEGQALQAKF IESYAEQLRDGIDDRLVLVPGQPVSRPAISSAGSVRGRAQTGGGGSDSVPRVGAGNLHEEVQKAQAAGRQKITGSRGRLD AITKGAQGASAEAADDVKEW
Sequences:
>Translated_900_residues MVEIFTVGGGDYLVNVFQAVAAWTGNGGYKSLLQVVMVMGLGLSALTLAFNQDWRAWINWFLGATLIYSCLMVPRLEVHV TDRLNPSLAPANVSNVPLGLALMASFTSQVGDYLTGSAEVVFGLPGDLNYSKNGMIYGARLYDATRSLRISDPEFAANLD EHFRQCVFYDVLLGRYSMKELAETGDIWATIAPGSQARAQRFLTRDATSGQVSSNIVTCREAYDTLNAQWAGLVDAMGSV FGRQLYPNQTTALAKAKLFADLPVAYQYLTGVSANATEIFKQTLTINAMSQAMHSMSGTSGAGNVDVYAQTRADIQTERT YGSIASNAMKWVPLLNVVLTVLFYALFPVLFPLFLLPKTGPVALKGYVTGFFYLAAWGPLFVILHMMLMYKGAADMSAVT GSNGLSLASFTGMADVNSDIGLLAGYLIASVPFLAGGVAKGAMAISHHATSYLNPSQNAAEEAAREASTGNVSLGNTSFE NSSVLTRQFAQGTIAPSFTYGAPQTRTFSDTGAMTTSFPDGSYDQIPTSSYPFTPTLGQEFTARLSTMASQARANSESYT NFATESTTSAVTKFRELRDQFSRGASFESATGTSNSDSIQTAFSEVDQASTSLQRQFGLSRRVADDISTAWFLGGEAGAK AGISNGVLSGSVGAKGGGTRTWTDSDIGIASEDRSRIFGSLSQMSDSRNWSSTRDGFVRSVSTSSSSSISSTASGMNASL TEAQSFTIEARRAEELANRLESQASFYEGNSAAGSLNLSQAYREWGLAEIESNRDFYGNARFDDVTFQLSPEGQALQAKF IESYAEQLRDGIDDRLVLVPGQPVSRPAISSAGSVRGRAQTGGGGSDSVPRVGAGNLHEEVQKAQAAGRQKITGSRGRLD AITKGAQGASAEAADDVKEW >Mature_900_residues MVEIFTVGGGDYLVNVFQAVAAWTGNGGYKSLLQVVMVMGLGLSALTLAFNQDWRAWINWFLGATLIYSCLMVPRLEVHV TDRLNPSLAPANVSNVPLGLALMASFTSQVGDYLTGSAEVVFGLPGDLNYSKNGMIYGARLYDATRSLRISDPEFAANLD EHFRQCVFYDVLLGRYSMKELAETGDIWATIAPGSQARAQRFLTRDATSGQVSSNIVTCREAYDTLNAQWAGLVDAMGSV FGRQLYPNQTTALAKAKLFADLPVAYQYLTGVSANATEIFKQTLTINAMSQAMHSMSGTSGAGNVDVYAQTRADIQTERT YGSIASNAMKWVPLLNVVLTVLFYALFPVLFPLFLLPKTGPVALKGYVTGFFYLAAWGPLFVILHMMLMYKGAADMSAVT GSNGLSLASFTGMADVNSDIGLLAGYLIASVPFLAGGVAKGAMAISHHATSYLNPSQNAAEEAAREASTGNVSLGNTSFE NSSVLTRQFAQGTIAPSFTYGAPQTRTFSDTGAMTTSFPDGSYDQIPTSSYPFTPTLGQEFTARLSTMASQARANSESYT NFATESTTSAVTKFRELRDQFSRGASFESATGTSNSDSIQTAFSEVDQASTSLQRQFGLSRRVADDISTAWFLGGEAGAK AGISNGVLSGSVGAKGGGTRTWTDSDIGIASEDRSRIFGSLSQMSDSRNWSSTRDGFVRSVSTSSSSSISSTASGMNASL TEAQSFTIEARRAEELANRLESQASFYEGNSAAGSLNLSQAYREWGLAEIESNRDFYGNARFDDVTFQLSPEGQALQAKF IESYAEQLRDGIDDRLVLVPGQPVSRPAISSAGSVRGRAQTGGGGSDSVPRVGAGNLHEEVQKAQAAGRQKITGSRGRLD AITKGAQGASAEAADDVKEW
Specific function: Plays a crucial role in donor-recipient cell interactions. Required for two stages of the conjugation process:pilus biosynthesis and mating aggregate stabilization. May interact with traN [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012931 [H]
Pfam domain/function: PF07916 TraG_N [H]
EC number: NA
Molecular weight: Translated: 95878; Mature: 95878
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVEIFTVGGGDYLVNVFQAVAAWTGNGGYKSLLQVVMVMGLGLSALTLAFNQDWRAWINW CEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHH FLGATLIYSCLMVPRLEVHVTDRLNPSLAPANVSNVPLGLALMASFTSQVGDYLTGSAEV HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE VFGLPGDLNYSKNGMIYGARLYDATRSLRISDPEFAANLDEHFRQCVFYDVLLGRYSMKE EEECCCCCCCCCCCEEEEEEHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHH LAETGDIWATIAPGSQARAQRFLTRDATSGQVSSNIVTCREAYDTLNAQWAGLVDAMGSV HHHCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH FGRQLYPNQTTALAKAKLFADLPVAYQYLTGVSANATEIFKQTLTINAMSQAMHSMSGTS HHCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC GAGNVDVYAQTRADIQTERTYGSIASNAMKWVPLLNVVLTVLFYALFPVLFPLFLLPKTG CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC PVALKGYVTGFFYLAAWGPLFVILHMMLMYKGAADMSAVTGSNGLSLASFTGMADVNSDI CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEHHHCCCCCCCCCH GLLAGYLIASVPFLAGGVAKGAMAISHHATSYLNPSQNAAEEAAREASTGNVSLGNTSFE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEECCCCCC NSSVLTRQFAQGTIAPSFTYGAPQTRTFSDTGAMTTSFPDGSYDQIPTSSYPFTPTLGQE CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHH FTARLSTMASQARANSESYTNFATESTTSAVTKFRELRDQFSRGASFESATGTSNSDSIQ HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH TAFSEVDQASTSLQRQFGLSRRVADDISTAWFLGGEAGAKAGISNGVLSGSVGAKGGGTR HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCC TWTDSDIGIASEDRSRIFGSLSQMSDSRNWSSTRDGFVRSVSTSSSSSISSTASGMNASL CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHEEECCCCCCCHHHHHCCCCCCH TEAQSFTIEARRAEELANRLESQASFYEGNSAAGSLNLSQAYREWGLAEIESNRDFYGNA HHHHHHEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCEECCCCCCCCCC RFDDVTFQLSPEGQALQAKFIESYAEQLRDGIDDRLVLVPGQPVSRPAISSAGSVRGRAQ CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC TGGGGSDSVPRVGAGNLHEEVQKAQAAGRQKITGSRGRLDAITKGAQGASAEAADDVKEW CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHCC >Mature Secondary Structure MVEIFTVGGGDYLVNVFQAVAAWTGNGGYKSLLQVVMVMGLGLSALTLAFNQDWRAWINW CEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHH FLGATLIYSCLMVPRLEVHVTDRLNPSLAPANVSNVPLGLALMASFTSQVGDYLTGSAEV HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE VFGLPGDLNYSKNGMIYGARLYDATRSLRISDPEFAANLDEHFRQCVFYDVLLGRYSMKE EEECCCCCCCCCCCEEEEEEHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHH LAETGDIWATIAPGSQARAQRFLTRDATSGQVSSNIVTCREAYDTLNAQWAGLVDAMGSV HHHCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH FGRQLYPNQTTALAKAKLFADLPVAYQYLTGVSANATEIFKQTLTINAMSQAMHSMSGTS HHCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC GAGNVDVYAQTRADIQTERTYGSIASNAMKWVPLLNVVLTVLFYALFPVLFPLFLLPKTG CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC PVALKGYVTGFFYLAAWGPLFVILHMMLMYKGAADMSAVTGSNGLSLASFTGMADVNSDI CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEHHHCCCCCCCCCH GLLAGYLIASVPFLAGGVAKGAMAISHHATSYLNPSQNAAEEAAREASTGNVSLGNTSFE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEECCCCCC NSSVLTRQFAQGTIAPSFTYGAPQTRTFSDTGAMTTSFPDGSYDQIPTSSYPFTPTLGQE CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHH FTARLSTMASQARANSESYTNFATESTTSAVTKFRELRDQFSRGASFESATGTSNSDSIQ HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH TAFSEVDQASTSLQRQFGLSRRVADDISTAWFLGGEAGAKAGISNGVLSGSVGAKGGGTR HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCC TWTDSDIGIASEDRSRIFGSLSQMSDSRNWSSTRDGFVRSVSTSSSSSISSTASGMNASL CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHEEECCCCCCCHHHHHCCCCCCH TEAQSFTIEARRAEELANRLESQASFYEGNSAAGSLNLSQAYREWGLAEIESNRDFYGNA HHHHHHEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCEECCCCCCCCCC RFDDVTFQLSPEGQALQAKFIESYAEQLRDGIDDRLVLVPGQPVSRPAISSAGSVRGRAQ CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC TGGGGSDSVPRVGAGNLHEEVQKAQAAGRQKITGSRGRLDAITKGAQGASAEAADDVKEW CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1348105; 7915817 [H]